Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0524100 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 4.0e-99 365.2 241 100.0
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 3.3e-21 106.3 114 58.8
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 8.2e-20 101.7 92 60.9
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 1.0e-17 94.7 98 59.2
Zm00001eb353580 Zea mays HOM05D002019 ORTHO05D010005 1.7e-12 77.4 94 51.1
TAR374G1288 Trochodendron aralioides HOM05D002019 ORTHO05D002150 3.1e-11 73.2 60 56.7
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 3.1e-11 73.2 96 42.7
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 5.3e-11 72.4 88 46.6
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 7.0e-11 72.0 59 57.6
Glyma.02G239800 Glycine max HOM05D002019 ORTHO05D002150 2.0e-10 70.5 83 45.8
TAR383G0675 Trochodendron aralioides HOM05D002019 ORTHO05D002150 2.0e-10 70.5 95 42.1
QL05p019670 Quercus lobata HOM05D002019 ORTHO05D002150 2.7e-10 70.1 97 43.3
Ciclev10026542m.g Citrus clementina HOM05D002019 ORTHO05D002150 7.7e-10 68.6 98 44.9
Nitab4.5_0006022g0010 Nicotiana tabacum HOM05D002019 ORTHO05D002150 1.3e-09 67.8 96 39.6
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 1.3e-09 67.8 91 42.9
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 1.7e-09 67.4 88 44.3
Lsat_1_v5_gn_3_69461 Lactuca sativa HOM05D002019 ORTHO05D002150 1.7e-09 67.4 103 37.9
CiPaw.02G145100 Carya illinoinensis HOM05D002019 ORTHO05D002150 2.9e-09 66.6 97 42.3
MBI03_g24044_MAGBIO Magnolia biondii HOM05D002019 ORTHO05D002150 2.9e-09 66.6 96 41.7
Nn8g39043 Nelumbo nucifera HOM05D002019 ORTHO05D002150 2.9e-09 66.6 90 41.1
Thecc.06G101300 Theobroma cacao HOM05D002019 ORTHO05D002150 2.9e-09 66.6 96 42.7
Dinv42258 Davidia involucrata HOM05D002019 ORTHO05D002150 3.8e-09 66.2 95 42.1
Glyma.18G045200 Glycine max HOM05D002019 ORTHO05D002150 3.8e-09 66.2 65 47.7
HanXRQChr16g0532381 Helianthus annuus HOM05D002019 ORTHO05D002150 3.8e-09 66.2 95 43.2
arahy.Tifrunner.gnm1.ann1.SQC659 Arachis hypogaea HOM05D002019 ORTHO05D002150 5.0e-09 65.9 45 64.4
arahy.Tifrunner.gnm1.ann1.ZUC4D4 Arachis hypogaea HOM05D002019 ORTHO05D002150 5.0e-09 65.9 45 64.4
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 5.0e-09 65.9 56 53.6
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 5.0e-09 65.9 47 63.8
Hma1.2p1_0430F.1_g151290 Hydrangea macrophylla HOM05D002019 ORTHO05D002150 6.5e-09 65.5 50 58.0
Nitab4.5_0004969g0050 Nicotiana tabacum HOM05D002019 ORTHO05D002150 6.5e-09 65.5 127 36.2
Cfa007741 Carpinus fangiana HOM05D002019 ORTHO05D002150 8.5e-09 65.1 87 43.7
DCAR_014138 Daucus carota HOM05D002019 ORTHO05D002150 8.5e-09 65.1 49 61.2
Hund26288 Selenicereus undatus HOM05D002019 ORTHO05D002150 8.5e-09 65.1 91 45.1
Solyc03g121090.4 Solanum lycopersicum HOM05D002019 ORTHO05D002150 8.5e-09 65.1 92 42.4
Sopen03g039920 Solanum pennellii HOM05D002019 ORTHO05D002150 8.5e-09 65.1 92 42.4
Duzib235G0090 Durio zibethinus HOM05D002019 ORTHO05D002150 1.1e-08 64.7 96 41.7
PGSC0003DMG400002524 Solanum tuberosum HOM05D002019 ORTHO05D002150 1.1e-08 64.7 46 63.0
ATR0705G013 Amborella trichopoda HOM05D002019 ORTHO05D002150 1.9e-08 63.9 59 52.5
CAN.G1143.19 Capsicum annuum HOM05D002019 ORTHO05D002150 1.9e-08 63.9 105 35.2
CiPaw.03G079100 Carya illinoinensis HOM05D002019 ORTHO05D002150 1.9e-08 63.9 47 61.7
DCAR_028650 Daucus carota HOM05D002019 ORTHO05D002150 1.9e-08 63.9 58 50.0
Glyma.14G209000 Glycine max HOM05D002019 ORTHO05D002150 1.9e-08 63.9 95 38.9
Ah.01g017320 Amaranthus hybridus HOM05D002019 ORTHO05D002150 2.5e-08 63.5 93 39.8
Haze_14335 Corylus avellana HOM05D002019 ORTHO05D002150 2.5e-08 63.5 78 44.9
HanXRQChr15g0485231 Helianthus annuus HOM05D002019 ORTHO05D002150 2.5e-08 63.5 71 46.5
VMungo0540G2448 Vigna mungo HOM05D002019 ORTHO05D002150 2.5e-08 63.5 72 45.8
GSVIVG01035317001 Vitis vinifera HOM05D002019 ORTHO05D002150 2.5e-08 63.5 97 36.1
Dinv36721 Davidia involucrata HOM05D002019 ORTHO05D002150 3.2e-08 63.2 78 46.2
Duzib192G0761 Durio zibethinus HOM05D002019 ORTHO05D002150 3.2e-08 63.2 98 43.9
Phvul.006G085800 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 3.2e-08 63.2 57 50.9
Nn6g35346 Nelumbo nucifera HOM05D002019 ORTHO05D002150 4.2e-08 62.8 47 59.6
vmacro20452 Vaccinium macrocarpon HOM05D002019 ORTHO05D002150 4.2e-08 62.8 58 53.4
Aqoxy7G01383 Aquilegia oxysepala HOM05D002019 ORTHO05D002150 5.5e-08 62.4 49 55.1
COL.COLO4_30527 Corchorus olitorius HOM05D002019 ORTHO05D002150 5.5e-08 62.4 104 41.3
Phvul.008G241900 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 5.5e-08 62.4 81 44.4
Rhsim10G0186200 Rhododendron simsii HOM05D002019 ORTHO05D002150 5.5e-08 62.4 55 52.7
COL.COLO4_34724 Corchorus olitorius HOM05D002019 ORTHO05D002150 7.2e-08 62.0 70 48.6
Medtr3g064350 Medicago truncatula HOM05D002019 ORTHO05D002150 7.2e-08 62.0 57 50.9
Phvul.002G307900 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 7.2e-08 62.0 50 56.0
Psat5g145360 Pisum sativum HOM05D002019 ORTHO05D002150 7.2e-08 62.0 102 38.2
GSVIVG01035279001 Vitis vinifera HOM05D002019 ORTHO05D002150 7.2e-08 62.0 52 53.8
Atru.chr1.1979 Acer truncatum HOM05D002019 ORTHO05D002150 9.4e-08 61.6 47 55.3
ECA246G2032 Erigeron canadensis HOM05D002019 ORTHO05D002150 9.4e-08 61.6 47 55.3
Peaxi162Scf00521g00028 Petunia axillaris HOM05D002019 ORTHO05D002150 9.4e-08 61.6 47 57.4
EL10Ac9g21200 Beta vulgaris HOM05D002019 ORTHO05D002150 1.2e-07 61.2 80 41.2
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 1.2e-07 61.2 47 57.4
Ca_17062_v3 Cicer arietinum L. HOM05D002019 ORTHO05D002150 1.2e-07 61.2 58 51.7
Cc06_g10620 Coffea canephora HOM05D002019 ORTHO05D002150 1.2e-07 61.2 94 39.4
Aqoxy3G04192 Aquilegia oxysepala HOM05D002019 ORTHO05D002150 1.6e-07 60.8 59 52.5
Dinv30427 Davidia involucrata HOM05D002019 ORTHO05D002150 1.6e-07 60.8 50 54.0
ClCG07G013370 Citrullus lanatus HOM05D002019 ORTHO05D002150 2.1e-07 60.5 94 39.4
Haze_15857 Corylus avellana HOM05D002019 ORTHO05D002150 2.1e-07 60.5 71 47.9
Hund00702 Selenicereus undatus HOM05D002019 ORTHO05D002150 2.1e-07 60.5 97 40.2
HPP92_011536 Vanilla planifolia HOM05D002019 ORTHO05D002150 2.1e-07 60.5 104 42.3
arahy.Tifrunner.gnm1.ann1.TVU1YR Arachis hypogaea HOM05D002019 ORTHO05D002150 2.7e-07 60.1 90 42.2
Solyc03g031890.3 Solanum lycopersicum HOM05D002019 ORTHO05D002150 2.7e-07 60.1 44 59.1
Sopen03g005760 Solanum pennellii HOM05D002019 ORTHO05D002150 2.7e-07 60.1 44 59.1
PGSC0003DMG402024074 Solanum tuberosum HOM05D002019 ORTHO05D002150 2.7e-07 60.1 44 59.1
Actinidia40403 Actinidia chinensis HOM05D002019 ORTHO05D002150 3.6e-07 59.7 59 47.5
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 3.6e-07 59.7 47 57.4
Cc07_g12670 Coffea canephora HOM05D002019 ORTHO05D002150 3.6e-07 59.7 44 59.1
Lj5P52T11 Lonicera japonica HOM05D002019 ORTHO05D002150 3.6e-07 59.7 56 53.6
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 3.6e-07 59.7 46 58.7
Ah.01g005730 Amaranthus hybridus HOM05D002019 ORTHO05D002150 4.7e-07 59.3 44 56.8
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 4.7e-07 59.3 43 62.8
TWI74G0642 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 4.7e-07 59.3 47 57.4
GSVIVG01015284001 Vitis vinifera HOM05D002019 ORTHO05D002150 4.7e-07 59.3 95 40.0
CSS0006437 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 6.1e-07 58.9 99 40.4
CSS0034986 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 6.1e-07 58.9 99 40.4
Glyma.11G208700 Glycine max HOM05D002019 ORTHO05D002150 6.1e-07 58.9 65 46.2
LjContig00141g0027651 Lotus japonicus HOM05D002019 ORTHO05D002150 6.1e-07 58.9 54 51.9
Lalb_Chr05g0223301 Lupinus albus HOM05D002019 ORTHO05D002150 6.1e-07 58.9 44 54.5
Hund07614 Selenicereus undatus HOM05D002019 ORTHO05D002150 6.1e-07 58.9 45 60.0
CsaV3_3G023510 Cucumis sativus L. HOM05D002019 ORTHO05D002150 8.0e-07 58.5 133 31.6
Duzib160G0479 Durio zibethinus HOM05D002019 ORTHO05D002150 8.0e-07 58.5 50 50.0
Nitab4.5_0000091g0300 Nicotiana tabacum HOM05D002019 ORTHO05D002150 8.0e-07 58.5 44 59.1
Sed0002966 Sechium edule HOM05D002019 ORTHO05D002150 8.0e-07 58.5 56 50.0
Sc12g0010130 Simmondsia chinensis HOM05D002019 ORTHO05D002150 8.0e-07 58.5 55 49.1
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 1.0e-06 58.2 44 59.1
Hma1.2p1_0034F.1_g021470 Hydrangea macrophylla HOM05D002019 ORTHO05D002150 1.0e-06 58.2 59 49.2
Prupe.7G218000 Prunus persica HOM05D002019 ORTHO05D002150 1.0e-06 58.2 64 46.9
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.4e-06 57.8 64 48.4
MELO3C013006.2 Cucumis melo HOM05D002019 ORTHO05D002150 1.4e-06 57.8 133 30.8
FvH4_6g32530 Fragaria vesca HOM05D002019 ORTHO05D002150 1.4e-06 57.8 59 50.8
FAN02G1665 Fragaria x ananassa HOM05D002019 ORTHO05D002150 1.4e-06 57.8 59 50.8
FAN05G3360 Fragaria x ananassa HOM05D002019 ORTHO05D002150 1.4e-06 57.8 59 50.8
FAN14G0437 Fragaria x ananassa HOM05D002019 ORTHO05D002150 1.4e-06 57.8 59 50.8
Gohir.A02G117000 Gossypium hirsutum HOM05D002019 ORTHO05D002150 1.4e-06 57.8 50 50.0
Gorai.003G061300 Gossypium raimondii HOM05D002019 ORTHO05D002150 1.4e-06 57.8 50 50.0
Manes.04G135000 Manihot esculenta HOM05D002019 ORTHO05D002150 1.4e-06 57.8 96 39.6
Dinv37969 Davidia involucrata HOM05D002019 ORTHO05D002150 1.8e-06 57.4 50 52.0
Lj6g0022787 Lotus japonicus HOM05D002019 ORTHO05D002150 1.8e-06 57.4 90 37.8
Cfa003163 Carpinus fangiana HOM05D002019 ORTHO05D002150 2.3e-06 57.0 60 51.7
CiPaw.01G230600 Carya illinoinensis HOM05D002019 ORTHO05D002150 2.3e-06 57.0 50 54.0
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 2.3e-06 57.0 39 64.1
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.3e-06 57.0 39 64.1
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.3e-06 57.0 39 64.1
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.3e-06 57.0 39 64.1
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.3e-06 57.0 39 64.1
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.3e-06 57.0 39 64.1
Manes.11G032500 Manihot esculenta HOM05D002019 ORTHO05D002150 2.3e-06 57.0 92 40.2
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 2.3e-06 57.0 42 61.9
Oeu058689.1 Olea europaea HOM05D002019 ORTHO05D002150 2.3e-06 57.0 46 56.5
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 2.3e-06 57.0 38 63.2
TWI18G0772 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 2.3e-06 57.0 49 53.1
arahy.Tifrunner.gnm1.ann1.EZ0DFJ Arachis hypogaea HOM05D002019 ORTHO05D002150 3.0e-06 56.6 90 41.1
FvH4_1g06410 Fragaria vesca HOM05D002019 ORTHO05D002150 3.0e-06 56.6 59 52.5
FAN23G2440 Fragaria x ananassa HOM05D002019 ORTHO05D002150 3.0e-06 56.6 59 52.5
FAN28G2283 Fragaria x ananassa HOM05D000606 ORTHO05D002249 3.0e-06 56.6 59 52.5
Oeu060671.1 Olea europaea HOM05D002019 ORTHO05D002150 3.0e-06 56.6 46 58.7
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 3.0e-06 56.6 39 61.5
TWI12G1440 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 3.0e-06 56.6 49 51.0
VMungo0251G1925 Vigna mungo HOM05D002019 ORTHO05D002150 3.0e-06 56.6 44 52.3
EL10Ac8g18366 Beta vulgaris HOM05D002019 ORTHO05D002150 4.0e-06 56.2 44 54.5
CANSAT56G1675 Cannabis sativa HOM05D002019 ORTHO05D002150 4.0e-06 56.2 56 50.0
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 4.0e-06 56.2 39 61.5
Eucgr.C00963 Eucalyptus grandis HOM05D002019 ORTHO05D002150 4.0e-06 56.2 50 46.0
FAN26G0192 Fragaria x ananassa HOM05D002019 ORTHO05D002150 4.0e-06 56.2 59 52.5
FAN26G2303 Fragaria x ananassa HOM05D002019 ORTHO05D002150 4.0e-06 56.2 59 52.5
Manes.16G107900 Manihot esculenta HOM05D002019 ORTHO05D002150 4.0e-06 56.2 78 42.3
PSO063G3878 Papaver somniferum HOM05D002019 ORTHO05D002150 4.0e-06 56.2 72 43.1
PSO832G3635 Papaver somniferum HOM05D002019 ORTHO05D002150 4.0e-06 56.2 72 43.1
Psat6g120360 Pisum sativum HOM05D002019 ORTHO05D002150 4.0e-06 56.2 66 42.4
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 4.0e-06 56.2 39 64.1
HPP92_022962 Vanilla planifolia HOM05D002019 ORTHO05D432088 4.0e-06 56.2 55 52.7
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 5.2e-06 55.8 62 48.4
Lj4g0009291 Lotus japonicus HOM05D002019 ORTHO05D002150 5.2e-06 55.8 82 37.8
MD17G1181600 Malus domestica HOM05D002019 ORTHO05D002150 5.2e-06 55.8 100 37.0
Phvul.004G174600 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 5.2e-06 55.8 94 40.4
TPR.G37435 Trifolium pratense HOM05D002019 ORTHO05D002150 5.2e-06 55.8 58 48.3
VMungo0647G2085 Vigna mungo HOM05D002019 ORTHO05D002150 5.2e-06 55.8 85 38.8
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 6.8e-06 55.5 39 59.0
Haze_25837 Corylus avellana HOM05D002019 ORTHO05D002150 6.8e-06 55.5 75 45.3
MELO3C015423.2 Cucumis melo HOM05D002019 ORTHO05D002150 6.8e-06 55.5 111 33.3
Duzib150G0515 Durio zibethinus HOM05D002019 ORTHO05D002150 6.8e-06 55.5 68 47.1
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 6.8e-06 55.5 39 59.0
RcHm_v2.0_Chr2g0140911 Rosa chinensis HOM05D002019 ORTHO05D002150 6.8e-06 55.5 57 49.1
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 6.8e-06 55.5 39 59.0
TPR.G33508 Trifolium pratense HOM05D002019 ORTHO05D002150 6.8e-06 55.5 44 52.3
Ah.09g230520 Amaranthus hybridus HOM05D002019 ORTHO05D002150 8.8e-06 55.1 39 61.5
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 8.8e-06 55.1 124 31.5
Psat7g017480 Pisum sativum HOM05D002019 ORTHO05D002150 8.8e-06 55.1 90 42.2
RcHm_v2.0_Chr2g0092151 Rosa chinensis HOM05D002019 ORTHO05D002150 8.8e-06 55.1 59 52.5


User provided reference genes

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