Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0515900 Oryza sativa ssp. japonica HOM05D003433 ORTHO05D003921 6.0e-48 194.1 119 100.0
Zm00001eb353100 Zea mays HOM05D003433 ORTHO05D003921 2.3e-23 112.5 102 61.8
Peaxi162Scf01018g00310 Petunia axillaris HOM05D003433 ORTHO05D003921 1.4e-17 93.2 102 56.9
Zm00001eb370860 Zea mays HOM05D003433 ORTHO05D003921 1.9e-17 92.8 99 68.7
Nitab4.5_0001375g0090 Nicotiana tabacum HOM05D003433 ORTHO05D003921 5.5e-17 91.3 102 61.8
vmacro15947 Vaccinium macrocarpon HOM05D003433 ORTHO05D003921 7.2e-17 90.9 102 56.9
CAN.G79.79 Capsicum annuum HOM05D003433 ORTHO05D003921 9.4e-17 90.5 102 57.8
Peaxi162Scf00042g00059 Petunia axillaris HOM05D003433 ORTHO05D003921 1.2e-16 90.1 102 63.7
Zm00001eb153500 Zea mays HOM05D003433 ORTHO05D003921 2.7e-16 89.0 102 64.7
Nitab4.5_0000376g0010 Nicotiana tabacum HOM05D003433 ORTHO05D003921 3.6e-16 88.6 102 58.8
Psat1g201440 Pisum sativum HOM05D003433 ORTHO05D003921 4.6e-16 88.2 102 46.1
Sc05g0007340 Simmondsia chinensis HOM05D003433 ORTHO05D003921 4.6e-16 88.2 102 60.8
Prupe.4G172600 Prunus persica HOM05D003433 ORTHO05D003921 7.9e-16 87.4 102 54.9
Prupe.4G054900 Prunus persica HOM05D003433 ORTHO05D003921 1.0e-15 87.0 102 49.0
TPR.G11762 Trifolium pratense HOM05D003433 ORTHO05D003921 1.0e-15 87.0 102 49.0
Cc02_g14180 Coffea canephora HOM05D003433 ORTHO05D003921 1.4e-15 86.7 102 52.0
Migut.M01089 Erythranthe guttata HOM05D003433 ORTHO05D003921 1.4e-15 86.7 102 48.0
TAR487G0004 Trochodendron aralioides HOM05D003433 ORTHO05D003921 1.4e-15 86.7 102 52.9
Atru.chr10.1756 Acer truncatum HOM05D003433 ORTHO05D003921 1.8e-15 86.3 102 63.7
arahy.Tifrunner.gnm1.ann1.KS62Q6 Arachis hypogaea HOM05D003433 ORTHO05D003921 1.8e-15 86.3 102 63.7
FAN21G1348 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.8e-15 86.3 102 46.1
Manes.16G033800 Manihot esculenta HOM05D003433 ORTHO05D003921 2.3e-15 85.9 102 59.8
TWI63G1023 Tripterygium wilfordii HOM05D003433 ORTHO05D003921 2.3e-15 85.9 102 57.8
SGA_v2.0_scaffold16G07656 Striga asiatica HOM05D003433 ORTHO05D003921 3.0e-15 85.5 105 45.7
FvH4_3g08340 Fragaria vesca HOM05D003433 ORTHO05D003921 3.9e-15 85.1 102 46.1
FAN11G2340 Fragaria x ananassa HOM05D003433 ORTHO05D003921 3.9e-15 85.1 102 46.1
FAN16G1189 Fragaria x ananassa HOM05D003433 ORTHO05D003921 3.9e-15 85.1 102 46.1
FAN25G2053 Fragaria x ananassa HOM05D003433 ORTHO05D003921 3.9e-15 85.1 102 46.1
DCAR_006581 Daucus carota HOM05D003433 ORTHO05D003921 5.1e-15 84.7 102 59.8
Lj6g0016596 Lotus japonicus HOM05D003433 ORTHO05D003921 5.1e-15 84.7 102 57.8
Sopen02g022310 Solanum pennellii HOM05D003433 ORTHO05D003921 5.1e-15 84.7 102 51.0
unitig_26.g9354 Utricularia gibba HOM05D003433 ORTHO05D003921 5.1e-15 84.7 102 50.0
arahy.Tifrunner.gnm1.ann1.JCGS1M Arachis hypogaea HOM05D003433 ORTHO05D003921 6.7e-15 84.3 102 59.8
BcaB07g30864 Brassica carinata HOM05D003433 ORTHO05D003921 6.7e-15 84.3 102 63.7
Ca_00401_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 8.8e-15 84.0 102 59.8
Thhalv10001058m.g Eutrema salsugineum HOM05D003433 ORTHO05D003921 8.8e-15 84.0 102 60.8
Gohir.A01G059900 Gossypium hirsutum HOM05D003433 ORTHO05D003921 8.8e-15 84.0 98 56.1
Manes.03G104100 Manihot esculenta HOM05D003433 ORTHO05D003921 8.8e-15 84.0 104 52.9
Psat7g117240 Pisum sativum HOM05D003433 ORTHO05D003921 8.8e-15 84.0 102 58.8
TWI38G1079 Tripterygium wilfordii HOM05D003433 ORTHO05D003921 8.8e-15 84.0 102 55.9
Gohir.A13G147700 Gossypium hirsutum HOM05D003433 ORTHO05D003921 1.1e-14 83.6 102 55.9
Gohir.D13G152368 Gossypium hirsutum HOM05D003433 ORTHO05D003921 1.1e-14 83.6 102 55.9
Gorai.013G172200 Gossypium raimondii HOM05D003433 ORTHO05D003921 1.1e-14 83.6 102 55.9
Hma1.2p1_1465F.1_g285360 Hydrangea macrophylla HOM05D003433 ORTHO05D003921 1.1e-14 83.6 102 51.0
Lalb_Chr09g0327891 Lupinus albus HOM05D003433 ORTHO05D003921 1.1e-14 83.6 103 56.3
MD03G1236800 Malus domestica HOM05D003433 ORTHO05D003921 1.1e-14 83.6 102 55.9
Medtr4g088110 Medicago truncatula HOM05D003433 ORTHO05D003921 1.1e-14 83.6 102 54.9
RcHm_v2.0_Chr5g0031891 Rosa chinensis HOM05D003433 ORTHO05D003921 1.1e-14 83.6 102 54.9
Hund21199 Selenicereus undatus HOM05D003433 ORTHO05D003921 1.1e-14 83.6 102 61.8
Solyc02g077410.3 Solanum lycopersicum HOM05D003433 ORTHO05D003921 1.1e-14 83.6 102 50.0
Carub.0008s0191 Capsella rubella HOM05D003433 ORTHO05D003921 1.5e-14 83.2 102 63.7
CDE02G2062 Ceratophyllum demersum HOM05D003433 ORTHO05D003921 1.5e-14 83.2 102 43.1
Ca_18614_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 1.5e-14 83.2 102 52.0
Ca_30604_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 1.5e-14 83.2 102 52.0
Duzib213G0833 Durio zibethinus HOM05D003433 ORTHO05D003921 1.5e-14 83.2 100 56.0
Potri.011G060800 Populus trichocarpa HOM05D003433 ORTHO05D003921 1.5e-14 83.2 102 56.9
PGSC0003DMG400010727 Solanum tuberosum HOM05D003433 ORTHO05D003921 1.5e-14 83.2 102 52.0
Thecc.07G100500 Theobroma cacao HOM05D003433 ORTHO05D003921 1.5e-14 83.2 102 54.9
CSS0000003 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 2.0e-14 82.8 102 52.9
CANSAT35G0946 Cannabis sativa HOM05D003433 ORTHO05D003921 2.0e-14 82.8 102 58.8
Gohir.D05G346500 Gossypium hirsutum HOM05D003433 ORTHO05D003921 2.0e-14 82.8 102 54.9
Gorai.009G374400 Gossypium raimondii HOM05D003433 ORTHO05D003921 2.0e-14 82.8 102 54.9
Lj4g0012011 Lotus japonicus HOM05D003433 ORTHO05D003921 2.0e-14 82.8 104 46.2
Medtr2g014950 Medicago truncatula HOM05D003433 ORTHO05D003921 2.0e-14 82.8 102 56.9
GSVIVG01021141001 Vitis vinifera HOM05D003433 ORTHO05D003921 2.0e-14 82.8 102 50.0
BcaC03g16818 Brassica carinata HOM05D003433 ORTHO05D003921 2.5e-14 82.4 102 62.7
A02p29570 Brassica napus HOM05D003433 ORTHO05D003921 2.5e-14 82.4 102 61.8
BolC2t10739H Brassica oleracea HOM05D003433 ORTHO05D003921 2.5e-14 82.4 102 62.7
BraA02t07983Z Brassica rapa HOM05D003433 ORTHO05D003921 2.5e-14 82.4 102 62.7
CSS0002242 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 2.5e-14 82.4 102 52.9
Oeu062323.1 Olea europaea HOM05D003433 ORTHO05D003921 2.5e-14 82.4 102 49.0
BcaC04g21739 Brassica carinata HOM05D003433 ORTHO05D003921 3.3e-14 82.0 102 56.9
C09p28150 Brassica napus HOM05D003433 ORTHO05D003921 3.3e-14 82.0 102 56.9
CiPaw.11G165900 Carya illinoinensis HOM05D003433 ORTHO05D003921 3.3e-14 82.0 102 52.9
Duzib235G0342 Durio zibethinus HOM05D003433 ORTHO05D003921 3.3e-14 82.0 102 58.8
Lalb_Chr20g0121441 Lupinus albus HOM05D003433 ORTHO05D003921 3.3e-14 82.0 102 57.8
Potri.004G051100 Populus trichocarpa HOM05D003433 ORTHO05D003921 3.3e-14 82.0 102 54.9
CSS0048128 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 4.3e-14 81.6 102 53.9
CARHR175920 Cardamine hirsuta HOM05D003433 ORTHO05D003921 4.3e-14 81.6 102 61.8
Ciclev10016983m.g Citrus clementina HOM05D003433 ORTHO05D003921 4.3e-14 81.6 101 61.4
DCAR_028035 Daucus carota HOM05D003433 ORTHO05D003921 4.3e-14 81.6 102 52.9
Duzib160G0603 Durio zibethinus HOM05D003433 ORTHO05D003921 4.3e-14 81.6 103 52.4
Gohir.A04G037300 Gossypium hirsutum HOM05D003433 ORTHO05D003921 4.3e-14 81.6 102 54.9
Lalb_Chr15g0089601 Lupinus albus HOM05D003433 ORTHO05D003921 4.3e-14 81.6 102 53.9
arahy.Tifrunner.gnm1.ann1.6T1YLT Arachis hypogaea HOM05D003433 ORTHO05D003921 5.7e-14 81.3 102 49.0
arahy.Tifrunner.gnm1.ann1.ICFM41 Arachis hypogaea HOM05D003433 ORTHO05D003921 5.7e-14 81.3 102 49.0
A06p46240 Brassica napus HOM05D003433 ORTHO05D003921 5.7e-14 81.3 102 59.8
Rhsim02G0137600 Rhododendron simsii HOM05D003433 ORTHO05D003921 5.7e-14 81.3 104 58.7
C02p46910 Brassica napus HOM05D003433 ORTHO05D003921 7.4e-14 80.9 102 59.8
Sed0018895 Sechium edule HOM05D003433 ORTHO05D003921 7.4e-14 80.9 103 45.6
Glyma.10G069300 Glycine max HOM05D003433 ORTHO05D003921 9.7e-14 80.5 102 55.9
Gohir.D01G046300 Gossypium hirsutum HOM05D003433 ORTHO05D003921 9.7e-14 80.5 100 55.0
Sabra11G0041600 Salix brachista HOM05D003433 ORTHO05D003921 9.7e-14 80.5 104 46.2
Sp2g10880 Schrenkiella parvula HOM05D003433 ORTHO05D003921 9.7e-14 80.5 102 62.7
unitig_22.g6752 Utricularia gibba HOM05D003433 ORTHO05D003921 9.7e-14 80.5 97 47.4
Glyma.13G152372 Glycine max HOM05D003433 ORTHO05D003921 1.3e-13 80.1 102 56.9
HanXRQChr17g0561771 Helianthus annuus HOM05D003433 ORTHO05D003921 1.3e-13 80.1 102 50.0
Oeu046436.1 Olea europaea HOM05D003433 ORTHO05D003921 1.3e-13 80.1 102 59.8
Sabra16G0246000 Salix brachista HOM05D003433 ORTHO05D003921 1.3e-13 80.1 103 43.7
THA.LOC104812872 Tarenaya hassleriana HOM05D003433 ORTHO05D003921 1.3e-13 80.1 102 53.9
HPP92_024584 Vanilla planifolia HOM05D003433 ORTHO05D003921 1.3e-13 80.1 102 54.9
MD05G1307600 Malus domestica HOM05D003433 ORTHO05D003921 1.7e-13 79.7 102 42.2
MD10G1286800 Malus domestica HOM05D003433 ORTHO05D003921 1.7e-13 79.7 102 43.1
Nn1g04279 Nelumbo nucifera HOM05D003433 ORTHO05D003921 1.7e-13 79.7 102 52.0
Sed0002150 Sechium edule HOM05D003433 ORTHO05D003921 1.7e-13 79.7 102 60.8
TPR.G27870 Trifolium pratense HOM05D003433 ORTHO05D003921 1.7e-13 79.7 102 54.9
TWI38G1764 Tripterygium wilfordii HOM05D003433 ORTHO05D003921 1.7e-13 79.7 102 54.9
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.7e-13 79.7 102 52.9
AT5G46020 Arabidopsis thaliana HOM05D003433 ORTHO05D003921 2.2e-13 79.3 102 57.8
Ciclev10009748m.g Citrus clementina HOM05D003433 ORTHO05D003921 2.2e-13 79.3 102 51.0
FvH4_3g19100 Fragaria vesca HOM05D003433 ORTHO05D003921 2.2e-13 79.3 102 56.9
FAN11G3375 Fragaria x ananassa HOM05D003433 ORTHO05D003921 2.2e-13 79.3 102 56.9
FAN16G0342 Fragaria x ananassa HOM05D003433 ORTHO05D003921 2.2e-13 79.3 102 56.9
FAN21G3894 Fragaria x ananassa HOM05D003433 ORTHO05D003921 2.2e-13 79.3 102 56.9
FAN25G3112 Fragaria x ananassa HOM05D003433 ORTHO05D003921 2.2e-13 79.3 102 56.9
Gorai.002G065700 Gossypium raimondii HOM05D003433 ORTHO05D003921 2.2e-13 79.3 98 55.1
QL08p023193 Quercus lobata HOM05D003433 ORTHO05D003921 2.2e-13 79.3 102 52.9
THA.LOC104806140 Tarenaya hassleriana HOM05D003433 ORTHO05D003921 2.2e-13 79.3 102 59.8
AL8G12520 Arabidopsis lyrata HOM05D003433 ORTHO05D003921 2.8e-13 79.0 102 60.8
BcaC06g34384 Brassica carinata HOM05D003433 ORTHO05D003921 2.8e-13 79.0 102 58.8
C07p29220 Brassica napus HOM05D003433 ORTHO05D003921 2.8e-13 79.0 102 58.8
BolC7t43464H Brassica oleracea HOM05D003433 ORTHO05D003921 2.8e-13 79.0 102 58.8
Lalb_Chr18g0059311 Lupinus albus HOM05D003433 ORTHO05D003921 2.8e-13 79.0 102 56.9
Phvul.006G180300 Phaseolus vulgaris HOM05D003433 ORTHO05D003921 2.8e-13 79.0 102 52.9
CsaV3_6G050520 Cucumis sativus L. HOM05D003433 ORTHO05D003921 3.7e-13 78.6 103 57.3
Ah.09g237750 Amaranthus hybridus HOM05D003433 ORTHO05D003921 4.8e-13 78.2 102 59.8
CDE09G0432 Ceratophyllum demersum HOM05D003433 ORTHO05D003921 4.8e-13 78.2 110 39.1
QL05p043563 Quercus lobata HOM05D003433 ORTHO05D003921 4.8e-13 78.2 102 59.8
Sabra04G0032200 Salix brachista HOM05D003433 ORTHO05D003921 4.8e-13 78.2 102 45.1
Sc17g0005850 Simmondsia chinensis HOM05D003433 ORTHO05D003921 4.8e-13 78.2 102 55.9
Thecc.06G178400 Theobroma cacao HOM05D003433 ORTHO05D003921 4.8e-13 78.2 102 52.9
EL10Ac8g20460 Beta vulgaris HOM05D003433 ORTHO05D003921 6.3e-13 77.8 102 53.9
SMO228G0039 Selaginella moellendorffii HOM05D003433 ORTHO05D003921 6.3e-13 77.8 100 59.0
Cpa.g.sc841.3 Carica papaya HOM05D003433 ORTHO05D003921 8.2e-13 77.4 102 52.0
PSO675G6144 Papaver somniferum HOM05D003433 ORTHO05D003921 8.2e-13 77.4 102 50.0
Pp3c26_450 Physcomitrium patens HOM05D003433 ORTHO05D003921 8.2e-13 77.4 100 58.0
Aa31LG9G6880 Aethionema arabicum HOM05D003433 ORTHO05D003921 1.1e-12 77.0 102 60.8
Lalb_Chr03g0030831 Lupinus albus HOM05D003433 ORTHO05D003921 1.1e-12 77.0 100 45.0
SalBow8G3514 Salvia bowleyana HOM05D003433 ORTHO05D003921 1.1e-12 77.0 105 46.7
THA.LOC104798409 Tarenaya hassleriana HOM05D003433 ORTHO05D003921 1.1e-12 77.0 102 51.0
ECA234G4324 Erigeron canadensis HOM05D003433 ORTHO05D003921 1.4e-12 76.6 104 39.4
Gohir.A10G028800 Gossypium hirsutum HOM05D003433 ORTHO05D003921 1.4e-12 76.6 102 51.0
Gohir.D10G029200 Gossypium hirsutum HOM05D003433 ORTHO05D003921 1.4e-12 76.6 102 51.0
Gorai.011G031100 Gossypium raimondii HOM05D003433 ORTHO05D003921 1.4e-12 76.6 102 51.0
Lsat_1_v5_gn_4_51640 Lactuca sativa HOM05D003433 ORTHO05D003921 1.4e-12 76.6 102 50.0
PSO541G0211 Papaver somniferum HOM05D003433 ORTHO05D003921 1.8e-12 76.3 102 49.0
PGR042G3683 Punica granatum HOM05D003433 ORTHO05D003921 1.8e-12 76.3 102 51.0
MSTRG.7374 Avicennia marina HOM05D003433 ORTHO05D003921 3.1e-12 75.5 102 49.0
Pp3c13_22350 Physcomitrium patens HOM05D003433 ORTHO05D003921 4.1e-12 75.1 100 59.0
Mapoly0007s0163 Marchantia polymorpha HOM05D003433 ORTHO05D003921 5.3e-12 74.7 100 57.0
Aqoxy1G02243 Aquilegia oxysepala HOM05D003433 ORTHO05D003921 6.9e-12 74.3 99 50.5
CiPaw.12G116100 Carya illinoinensis HOM05D003433 ORTHO05D003921 6.9e-12 74.3 102 52.9
MSTRG.15837 Avicennia marina HOM05D003433 ORTHO05D003921 9.1e-12 73.9 102 55.9
AagrBONN_evm.TU.Sc2ySwM_340.301 Anthoceros agrestis HOM05D003433 ORTHO05D003921 1.2e-11 73.6 97 52.6
SalBow7G0821 Salvia bowleyana HOM05D003433 ORTHO05D003921 1.5e-11 73.2 102 52.9
SalBow7G1387 Salvia bowleyana HOM05D003433 ORTHO05D003921 1.5e-11 73.2 102 52.9
SEGI_29868 Sequoiadendron giganteum HOM05D003433 ORTHO05D003921 4.5e-11 71.6 102 52.0
MSTRG.14718 Avicennia marina HOM05D003433 ORTHO05D003921 5.9e-11 71.2 102 45.1
AUR62031106 Chenopodium quinoa HOM05D003433 ORTHO05D003921 1.0e-10 70.5 102 41.2
COL.COLO4_07498 Corchorus olitorius HOM05D003433 ORTHO05D003921 1.0e-10 70.5 102 44.1
AUR62014899 Chenopodium quinoa HOM05D003433 ORTHO05D003921 1.3e-10 70.1 102 41.2
BcaC06g31504 Brassica carinata HOM05D003433 ORTHO05D003921 2.2e-10 69.3 96 57.3
Oeu012169.1 Olea europaea HOM05D003433 ORTHO05D003921 1.1e-09 67.0 105 51.4
MD11G1257500 Malus domestica HOM05D003433 ORTHO05D003921 4.2e-09 65.1 89 52.8
COL.COLO4_31395 Corchorus olitorius HOM05D007416 ORTHO05D009329 1.2e-08 63.5 103 52.4
HanXRQChr16g0518571 Helianthus annuus HOM05D003433 ORTHO05D003921 1.6e-08 63.2 87 51.7
Cfa000547 Carpinus fangiana HOM05D003433 ORTHO05D003921 6.1e-08 61.2 107 47.7
Nn1g06363 Nelumbo nucifera HOM05D003433 ORTHO05D003921 7.9e-08 60.8 89 50.6
Oeu056523.1 Olea europaea HOM05D003433 ORTHO05D003921 7.9e-08 60.8 87 52.9
MELO3C007246.2 Cucumis melo HOM05D003433 ORTHO05D003921 2.3e-07 59.3 152 40.8
BraA06t27488Z Brassica rapa HOM05D003433 ORTHO05D003921 3.9e-07 58.5 42 66.7
Duzib192G0658 Durio zibethinus HOM05D003433 ORTHO05D003921 3.9e-07 58.5 102 48.0
Atru.chr2.2349 Acer truncatum HOM05D003433 ORTHO05D003921 3.3e-06 55.5 34 67.6
Ca_00377_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 3.3e-06 55.5 81 54.3
COL.COLO4_30865 Corchorus olitorius HOM05D003433 ORTHO05D003921 4.4e-06 55.1 42 64.3
Nitab4.5_0002227g0060 Nicotiana tabacum HOM05D003433 ORTHO05D003921 4.4e-06 55.1 42 59.5
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 7.4e-06 54.3 39 64.1
Nitab4.5_0000516g0030 Nicotiana tabacum HOM05D003433 ORTHO05D003921 7.4e-06 54.3 46 60.9
Pp3c13_22340 Physcomitrium patens HOM05D003433 ORTHO05D003921 7.4e-06 54.3 33 72.7


User provided reference genes

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