Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 3.2e-179 631.7 341 100.0
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 1.4e-110 403.7 342 66.1
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 2.4e-65 253.4 303 48.8
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 2.2e-63 246.9 330 46.7
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 2.9e-63 246.5 303 47.2
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 5.5e-62 242.3 310 47.4
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 7.2e-62 241.9 293 47.4
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 7.2e-62 241.9 280 48.2
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 1.6e-61 240.7 306 47.7
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 2.1e-61 240.4 302 48.0
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 6.1e-61 238.8 306 45.4
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 1.4e-60 237.7 292 49.3
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 1.4e-60 237.7 289 49.8
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 1.4e-60 237.7 279 49.8
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 1.4e-60 237.7 279 49.8
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 1.8e-60 237.3 304 46.4
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 2.3e-60 236.9 282 49.6
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 3.0e-60 236.5 280 48.2
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 3.0e-60 236.5 279 49.5
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 4.0e-60 236.1 290 45.9
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 4.0e-60 236.1 306 47.7
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 1.2e-59 234.6 296 47.3
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 1.2e-59 234.6 291 46.7
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 1.5e-59 234.2 281 48.4
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 1.5e-59 234.2 283 48.1
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 1.5e-59 234.2 276 48.9
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 2.0e-59 233.8 340 45.0
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 2.0e-59 233.8 312 46.5
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 2.0e-59 233.8 312 46.5
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 2.0e-59 233.8 288 48.3
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 2.0e-59 233.8 308 45.8
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 2.6e-59 233.4 312 43.9
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 2.6e-59 233.4 312 43.9
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 3.3e-59 233.0 299 47.2
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 3.3e-59 233.0 283 46.3
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 3.3e-59 233.0 312 44.9
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 4.4e-59 232.6 305 45.9
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 5.7e-59 232.3 300 46.3
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 5.7e-59 232.3 307 45.6
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 1.3e-58 231.1 342 43.6
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 1.3e-58 231.1 295 46.1
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 1.3e-58 231.1 295 46.1
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 2.2e-58 230.3 284 46.8
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 2.8e-58 229.9 280 46.4
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 3.7e-58 229.6 353 42.2
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 3.7e-58 229.6 341 43.4
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 3.7e-58 229.6 280 47.5
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 4.8e-58 229.2 282 47.5
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 8.2e-58 228.4 281 45.9
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 8.2e-58 228.4 311 45.7
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 1.1e-57 228.0 281 44.8
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 1.4e-57 227.6 298 46.6
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 1.4e-57 227.6 307 44.0
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 3.1e-57 226.5 342 42.1
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 3.1e-57 226.5 284 46.5
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 7.0e-57 225.3 280 47.5
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 7.0e-57 225.3 282 47.2
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 9.1e-57 224.9 280 47.1
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 9.1e-57 224.9 280 47.5
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 9.1e-57 224.9 280 47.5
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 9.1e-57 224.9 283 47.0
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 1.2e-56 224.6 306 45.8
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 1.2e-56 224.6 278 46.8
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 2.0e-56 223.8 286 47.6
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 2.7e-56 223.4 298 47.3
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 4.5e-56 222.6 289 45.7
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 4.5e-56 222.6 308 46.4
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 4.5e-56 222.6 284 45.8
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 5.9e-56 222.2 289 45.7
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 7.7e-56 221.9 316 43.7
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 2.2e-55 220.3 280 46.8
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 2.9e-55 219.9 277 47.7
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 2.9e-55 219.9 279 47.3
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 5.0e-55 219.2 282 46.5
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 6.5e-55 218.8 278 46.0
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 8.5e-55 218.4 307 43.6
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 8.5e-55 218.4 290 46.6
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 1.1e-54 218.0 279 46.6
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 1.1e-54 218.0 347 41.2
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 1.1e-54 218.0 281 45.6
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 1.1e-54 218.0 286 45.8
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 9.4e-54 214.9 288 44.4
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 9.4e-54 214.9 311 42.4
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 1.2e-53 214.5 297 44.8
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 2.1e-53 213.8 310 43.9
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 4.7e-53 212.6 296 44.6
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 6.1e-53 212.2 313 44.1
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 1.2e-51 208.0 287 44.9
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 5.5e-46 189.1 280 42.5
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 2.1e-45 187.2 307 41.4
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 5.6e-38 162.5 204 46.6
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 1.2e-35 154.8 282 36.5
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 1.4e-33 147.9 137 55.5
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 3.9e-31 139.8 280 35.7
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 2.0e-27 127.5 288 35.1
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 2.0e-27 127.5 128 52.3
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 1.1e-25 121.7 192 42.2
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 3.3e-22 110.2 292 31.5
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 2.1e-21 107.5 159 42.1
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 3.4e-19 100.1 128 45.3
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 6.6e-15 85.9 188 33.0
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 1.5e-14 84.7 176 33.5
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 1.5e-14 84.7 287 28.9
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 5.2e-12 76.3 298 28.9
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 3.4e-11 73.6 94 42.6


User provided reference genes

Program Settings