Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 3.8e-227 791.2 410 100.0
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 2.0e-95 353.6 327 56.0
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 2.7e-95 353.2 325 55.7
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 1.0e-94 351.3 319 55.2
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 1.7e-94 350.5 325 56.3
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 2.3e-94 350.1 324 55.9
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 1.5e-93 347.4 325 54.5
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 1.5e-93 347.4 325 56.0
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 7.3e-93 345.1 323 55.7
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 4.7e-92 342.4 322 54.0
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 8.0e-92 341.7 309 54.4
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 3.1e-91 339.7 356 49.4
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 3.4e-90 336.3 369 48.2
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 4.4e-90 335.9 356 48.0
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 5.8e-90 335.5 311 53.7
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 9.8e-90 334.7 309 55.7
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 1.3e-89 334.3 324 51.5
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 2.2e-89 333.6 324 53.1
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 2.9e-89 333.2 332 51.5
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 6.4e-89 332.0 314 54.1
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 3.2e-88 329.7 298 54.4
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 4.1e-88 329.3 382 45.8
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 4.1e-88 329.3 324 51.9
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 7.0e-88 328.6 358 48.9
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 1.6e-87 327.4 363 47.9
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 2.0e-87 327.0 317 53.9
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 3.5e-87 326.2 354 50.3
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 3.5e-87 326.2 353 49.6
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 3.5e-87 326.2 353 49.6
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 3.5e-87 326.2 319 51.4
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 4.6e-87 325.9 313 53.0
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 6.0e-87 325.5 326 51.8
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 6.0e-87 325.5 333 50.8
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 3.0e-86 323.2 325 50.8
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 6.6e-86 322.0 311 53.1
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 4.3e-85 319.3 310 50.3
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 4.3e-85 319.3 321 50.2
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 5.6e-85 318.9 325 51.1
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 9.5e-85 318.2 310 51.9
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 1.2e-84 317.8 310 52.9
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 2.8e-84 316.6 325 51.4
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 3.6e-84 316.2 296 56.1
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 3.6e-84 316.2 323 52.3
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 4.7e-84 315.8 331 50.5
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 4.7e-84 315.8 295 53.9
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 8.1e-84 315.1 299 52.8
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 4.0e-83 312.8 335 50.7
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 6.8e-83 312.0 325 50.5
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 8.9e-83 311.6 393 45.3
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 1.2e-82 311.2 297 53.9
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 1.5e-82 310.8 329 48.9
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 1.3e-81 307.8 271 65.7
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 1.7e-81 307.4 335 49.0
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 1.7e-81 307.4 291 53.6
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 2.2e-81 307.0 321 49.5
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 2.9e-81 306.6 333 47.7
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 2.9e-81 306.6 323 48.0
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 3.7e-81 306.2 324 49.1
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.4e-80 303.5 398 43.2
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 5.4e-80 302.4 329 49.2
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.2e-79 301.2 350 45.1
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 1.2e-79 301.2 313 50.8
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 2.1e-79 300.4 333 47.7
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 2.7e-79 300.1 327 48.3
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 4.6e-79 299.3 329 46.5
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 4.6e-79 299.3 336 46.4
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 6.0e-79 298.9 327 48.0
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 7.8e-79 298.5 334 45.8
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 1.0e-78 298.1 333 47.1
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 2.3e-78 297.0 335 46.0
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.0e-78 296.6 293 50.9
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 6.6e-78 295.4 317 47.0
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 8.6e-78 295.0 331 46.5
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 8.6e-78 295.0 335 46.9
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 1.5e-77 294.3 310 47.1
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 1.5e-77 294.3 310 47.1
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 1.9e-77 293.9 322 48.4
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 3.3e-77 293.1 280 53.9
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 5.6e-77 292.4 336 45.5
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 2.1e-76 290.4 336 45.2
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.6e-76 289.7 308 48.7
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 8.1e-76 288.5 338 45.6
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 8.1e-76 288.5 314 46.2
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 1.4e-75 287.7 378 41.8
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 1.5e-74 284.3 344 44.2
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 2.0e-74 283.9 395 41.5
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 2.6e-74 283.5 351 44.2
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 4.4e-74 282.7 353 43.9
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 7.6e-74 282.0 327 44.3
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 4.9e-73 279.3 305 49.8
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 7.1e-72 275.4 324 46.0
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 7.1e-72 275.4 330 44.8
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 2.3e-70 270.4 297 49.2
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 6.6e-70 268.9 344 46.8
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 1.5e-69 267.7 314 46.8
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 9.6e-69 265.0 231 54.5
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 8.1e-68 261.9 457 37.9
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 1.4e-67 261.2 238 53.8
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 1.1e-61 241.5 352 41.2
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 4.4e-58 229.6 220 50.9
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 1.7e-57 227.6 226 50.9
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 2.8e-52 210.3 191 59.2
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 4.8e-44 183.0 313 36.7
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 8.1e-44 182.2 190 47.4
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 3.4e-42 176.8 184 48.9
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 2.9e-41 173.7 170 50.0
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 7.1e-40 169.1 168 51.8
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 6.0e-39 166.0 363 34.2
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 7.9e-39 165.6 333 32.4
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 1.2e-34 151.8 281 33.5
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 3.4e-34 150.2 114 61.4
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 5.9e-34 149.4 146 48.6
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 4.6e-31 139.8 296 31.1
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 2.3e-30 137.5 190 40.5
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 3.3e-29 133.7 164 45.7
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 3.4e-26 123.6 316 28.8
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 2.9e-25 120.6 142 43.0
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.4e-24 118.2 255 31.4
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 1.9e-24 117.9 146 41.8
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.5e-24 117.5 290 29.0
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 7.2e-24 115.9 145 42.8
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 6.1e-23 112.8 136 43.4
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 1.3e-20 105.1 165 36.4
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 6.3e-20 102.8 193 32.6
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 9.1e-11 72.4 105 35.2
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 1.0e-09 68.9 76 48.7


User provided reference genes

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