Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 6.0e-81 304.3 173 100.0
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 2.2e-43 179.5 172 61.6
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 4.2e-42 175.3 132 68.2
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 4.2e-42 175.3 169 60.9
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 9.4e-42 174.1 129 70.5
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 1.2e-41 173.7 138 67.4
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 2.1e-41 172.9 137 65.0
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 2.7e-41 172.6 128 71.1
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 2.7e-41 172.6 128 69.5
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 3.6e-41 172.2 136 66.9
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 4.6e-41 171.8 131 67.9
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 4.6e-41 171.8 129 67.4
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 4.6e-41 171.8 132 67.4
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 6.1e-41 171.4 129 68.2
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 6.1e-41 171.4 132 65.9
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 7.9e-41 171.0 139 64.7
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 7.9e-41 171.0 136 66.2
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 1.0e-40 170.6 142 65.5
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.0e-40 170.6 136 66.2
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 1.4e-40 170.2 142 65.5
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 1.8e-40 169.9 135 65.9
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 2.3e-40 169.5 141 63.1
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 3.9e-40 168.7 132 65.9
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 5.1e-40 168.3 132 66.7
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 5.1e-40 168.3 132 66.7
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 5.1e-40 168.3 131 64.9
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 5.1e-40 168.3 141 62.4
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 8.8e-40 167.5 135 65.9
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 1.1e-39 167.2 133 66.2
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 1.5e-39 166.8 128 66.4
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 1.5e-39 166.8 131 65.6
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 1.5e-39 166.8 138 61.6
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 1.5e-39 166.8 188 52.1
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 1.5e-39 166.8 128 67.2
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 1.5e-39 166.8 135 65.2
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 2.0e-39 166.4 128 66.4
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 2.5e-39 166.0 133 63.9
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 4.3e-39 165.2 128 64.8
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 4.3e-39 165.2 130 65.4
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 4.3e-39 165.2 156 57.1
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 5.7e-39 164.9 132 63.6
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 7.4e-39 164.5 128 64.1
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 7.4e-39 164.5 139 59.0
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 1.3e-38 163.7 133 62.4
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 1.7e-38 163.3 179 53.1
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 2.8e-38 162.5 131 67.9
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 2.8e-38 162.5 140 62.9
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 4.8e-38 161.8 136 68.4
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 1.1e-37 160.6 140 60.0
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 1.8e-37 159.8 128 62.5
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 1.8e-37 159.8 131 61.1
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 3.1e-37 159.1 181 48.1
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 5.3e-37 158.3 140 59.3
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 5.3e-37 158.3 144 57.6
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 6.9e-37 157.9 119 67.2
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 6.9e-37 157.9 118 64.4
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 6.9e-37 157.9 140 58.6
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 6.9e-37 157.9 175 50.9
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 6.9e-37 157.9 135 62.2
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 1.5e-36 156.8 122 62.3
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 2.0e-36 156.4 140 60.7
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 2.0e-36 156.4 183 45.4
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.6e-36 156.0 144 58.3
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 2.6e-36 156.0 125 65.6
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 2.6e-36 156.0 125 65.6
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 3.4e-36 155.6 122 64.8
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 3.4e-36 155.6 137 59.9
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 3.4e-36 155.6 128 64.1
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.4e-36 155.6 128 64.1
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.4e-36 155.6 128 64.1
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.4e-36 155.6 128 63.3
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.4e-36 155.6 128 64.1
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.4e-36 155.6 128 64.1
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 3.4e-36 155.6 136 58.8
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 4.5e-36 155.2 143 58.7
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 5.9e-36 154.8 114 66.7
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 5.9e-36 154.8 121 62.0
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 7.7e-36 154.5 132 61.4
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 1.0e-35 154.1 132 62.1
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 1.0e-35 154.1 140 57.9
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.3e-35 153.7 132 60.6
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 1.3e-35 153.7 132 60.6
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 1.3e-35 153.7 130 59.2
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 1.7e-35 153.3 132 61.4
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 2.2e-35 152.9 132 61.4
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 2.2e-35 152.9 132 61.4
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 2.2e-35 152.9 132 61.4
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 2.9e-35 152.5 132 61.4
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 2.9e-35 152.5 132 61.4
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 3.8e-35 152.1 131 60.3
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 3.8e-35 152.1 131 60.3
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 5.0e-35 151.8 132 60.6
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 5.0e-35 151.8 118 61.9
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 6.5e-35 151.4 132 61.4
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 8.5e-35 151.0 132 60.6
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 8.5e-35 151.0 142 57.7
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 1.1e-34 150.6 142 57.0
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 1.4e-34 150.2 144 56.9
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 3.2e-34 149.1 132 59.8
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 5.5e-34 148.3 185 48.1
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 2.1e-33 146.4 137 65.7
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 3.0e-32 142.5 81 82.7
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 3.9e-32 142.1 129 60.5
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 4.4e-31 138.7 132 55.3
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.7e-30 136.7 107 62.6
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 1.8e-29 133.3 125 57.6
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 2.6e-28 129.4 108 63.0
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 5.9e-28 128.3 111 54.1
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 1.3e-27 127.1 149 49.7
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 3.8e-27 125.6 113 61.1
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 8.5e-27 124.4 104 63.5
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 8.5e-27 124.4 130 50.8
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 2.7e-25 119.4 126 49.2
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 8.0e-25 117.9 108 56.5
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 1.1e-23 114.0 119 53.8
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 2.6e-23 112.8 121 52.1
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.8e-22 109.4 102 59.8
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 2.8e-22 109.4 106 53.8
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 4.7e-17 92.0 129 39.5
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 1.3e-14 84.0 80 53.8
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.3e-11 73.9 48 70.8
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.1e-09 66.6 63 54.0
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 5.2e-08 62.0 82 46.3
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 1.3e-06 57.4 84 41.7


User provided reference genes

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