Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0485500 Oryza sativa ssp. japonica HOM05D000186 ORTHO05D019996 7.3e-15 82.4 34 100.0
Aa31LG5G23300 Aethionema arabicum HOM05D000186 ORTHO05D006806 4.6e-09 63.2 34 73.5
AT2G38650 Arabidopsis thaliana HOM05D000186 ORTHO05D006806 7.8e-09 62.4 34 73.5
Carub.0004s2063 Capsella rubella HOM05D000186 ORTHO05D006806 1.0e-08 62.0 34 70.6
AL4G35930 Arabidopsis lyrata HOM05D000186 ORTHO05D006806 1.3e-08 61.6 34 70.6
BcaB01g03668 Brassica carinata HOM05D000186 ORTHO05D006806 1.7e-08 61.2 34 70.6
CsaV3_4G013490 Cucumis sativus L. HOM05D000186 ORTHO05D006806 1.7e-08 61.2 34 64.7
Thhalv10016387m.g Eutrema salsugineum HOM05D000186 ORTHO05D006806 1.7e-08 61.2 34 70.6
Potri.006G114300 Populus trichocarpa HOM05D000186 ORTHO05D006806 1.7e-08 61.2 34 70.6
Sp4g20990 Schrenkiella parvula HOM05D000186 ORTHO05D006806 1.7e-08 61.2 34 70.6
BcaC01g05520 Brassica carinata HOM05D000186 ORTHO05D006806 2.3e-08 60.8 34 70.6
A03p21490 Brassica napus HOM05D000186 ORTHO05D006806 2.3e-08 60.8 34 70.6
BolC3t14935H Brassica oleracea HOM05D000186 ORTHO05D006806 2.3e-08 60.8 34 70.6
BraA03t11384Z Brassica rapa HOM05D000186 ORTHO05D006806 2.3e-08 60.8 34 70.6
CARHR133320 Cardamine hirsuta HOM05D000186 ORTHO05D006806 2.3e-08 60.8 34 70.6
Sabra06G0089200 Salix brachista HOM05D000186 ORTHO05D006806 2.3e-08 60.8 34 67.6
BcaC02g07455 Brassica carinata HOM05D000186 ORTHO05D006806 3.0e-08 60.5 34 67.6
A04p29480 Brassica napus HOM05D000186 ORTHO05D006806 3.0e-08 60.5 34 67.6
C04p66800 Brassica napus HOM05D000186 ORTHO05D006806 3.0e-08 60.5 34 67.6
BolC4t28181H Brassica oleracea HOM05D000186 ORTHO05D006806 3.0e-08 60.5 34 67.6
BraA04t18415Z Brassica rapa HOM05D000186 ORTHO05D006806 3.0e-08 60.5 34 67.6
MELO3C025283.2 Cucumis melo HOM05D000186 ORTHO05D006806 3.0e-08 60.5 34 64.7
SEGI_11805 Sequoiadendron giganteum HOM05D000186 ORTHO05D006806 3.0e-08 60.5 32 65.6
Manes.08G165700 Manihot esculenta HOM05D000186 ORTHO05D006806 3.9e-08 60.1 34 67.6
THA.LOC104806306 Tarenaya hassleriana HOM05D000186 ORTHO05D006806 3.9e-08 60.1 34 67.6
A05p07450 Brassica napus HOM05D000186 ORTHO05D006806 5.1e-08 59.7 34 70.6
C03p25440 Brassica napus HOM05D000186 ORTHO05D006806 5.1e-08 59.7 34 70.6
C04p08910 Brassica napus HOM05D000186 ORTHO05D006806 5.1e-08 59.7 34 70.6
BolC4t22481H Brassica oleracea HOM05D000186 ORTHO05D006806 5.1e-08 59.7 34 70.6
BraA05t19710Z Brassica rapa HOM05D000186 ORTHO05D006806 5.1e-08 59.7 34 70.6
CDE06G0250 Ceratophyllum demersum HOM05D000186 ORTHO05D006806 5.1e-08 59.7 32 65.6
Actinidia11467 Actinidia chinensis HOM05D000186 ORTHO05D006806 6.6e-08 59.3 34 64.7
Actinidia29001 Actinidia chinensis HOM05D000186 ORTHO05D006806 6.6e-08 59.3 34 64.7
CSS0042957 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D006806 6.6e-08 59.3 34 61.8
Dinv01964 Davidia involucrata HOM05D000186 ORTHO05D006806 6.6e-08 59.3 34 67.6
Os03g0330000 Oryza sativa ssp. japonica HOM05D000186 ORTHO05D006806 6.6e-08 59.3 34 67.6
Zm00001eb015760 Zea mays HOM05D000186 ORTHO05D006806 6.6e-08 59.3 34 67.6
Zm00001eb330810 Zea mays HOM05D000186 ORTHO05D006806 6.6e-08 59.3 34 67.6
Zm00001eb395280 Zea mays HOM05D000186 ORTHO05D006806 6.6e-08 59.3 34 67.6
DCAR_015317 Daucus carota HOM05D000186 ORTHO05D006806 8.6e-08 58.9 34 67.6
Lsat_1_v5_gn_9_40241 Lactuca sativa HOM05D000186 ORTHO05D006806 8.6e-08 58.9 34 70.6
Manes.09G119300 Manihot esculenta HOM05D000186 ORTHO05D006806 8.6e-08 58.9 32 71.9
Os09g0480400 Oryza sativa ssp. japonica HOM05D000186 ORTHO05D001124 8.6e-08 58.9 34 64.7
Potri.016G143966 Populus trichocarpa HOM05D000186 ORTHO05D006806 8.6e-08 58.9 34 64.7
Zm00001eb111640 Zea mays HOM05D000186 ORTHO05D006806 8.6e-08 58.9 34 67.6
Os07g0681700 Oryza sativa ssp. japonica HOM05D000186 ORTHO05D006806 1.1e-07 58.5 34 64.7
GSVIVG01029827001 Vitis vinifera HOM05D000186 ORTHO05D006806 1.1e-07 58.5 34 64.7
Dinv25388 Davidia involucrata HOM05D000186 ORTHO05D006806 1.5e-07 58.2 34 67.6
PSO339G6692 Papaver somniferum HOM05D000186 ORTHO05D006806 1.5e-07 58.2 34 64.7
PSO384G5073 Papaver somniferum HOM05D000186 ORTHO05D006806 1.5e-07 58.2 34 64.7
vmacro20097 Vaccinium macrocarpon HOM05D000186 ORTHO05D006806 1.5e-07 58.2 34 61.8
Rhsim05G0185300 Rhododendron simsii HOM05D000186 ORTHO05D006806 1.9e-07 57.8 34 61.8
Aqoxy2G00610 Aquilegia oxysepala HOM05D000186 ORTHO05D006806 2.5e-07 57.4 34 64.7
HanXRQChr15g0464651 Helianthus annuus HOM05D000186 ORTHO05D006806 2.5e-07 57.4 34 64.7
MBI14_g37689_MAGBIO Magnolia biondii HOM05D000186 ORTHO05D001124 2.5e-07 57.4 34 61.8
MD12G1196400 Malus domestica HOM05D000186 ORTHO05D006806 2.5e-07 57.4 32 65.6
Duzib151G0189 Durio zibethinus HOM05D000186 ORTHO05D006806 3.3e-07 57.0 34 61.8
Sed0003702 Sechium edule HOM05D000186 ORTHO05D006806 3.3e-07 57.0 34 61.8
CiPaw.10G167500 Carya illinoinensis HOM05D000186 ORTHO05D006806 4.3e-07 56.6 32 62.5
Nn5g26723 Nelumbo nucifera HOM05D000186 ORTHO05D019996 4.3e-07 56.6 34 58.8
Nn5g26724 Nelumbo nucifera HOM05D000186 ORTHO05D006806 4.3e-07 56.6 34 58.8
QL07p030191 Quercus lobata HOM05D000186 ORTHO05D006806 4.3e-07 56.6 32 68.8
QL07p030837 Quercus lobata HOM05D000186 ORTHO05D006806 4.3e-07 56.6 32 68.8
RcHm_v2.0_Chr3g0459281 Rosa chinensis HOM05D000186 ORTHO05D006806 4.3e-07 56.6 32 62.5
Thecc.04G063300 Theobroma cacao HOM05D000186 ORTHO05D006806 4.3e-07 56.6 34 58.8
ClCG04G005130 Citrullus lanatus HOM05D000186 ORTHO05D006806 5.6e-07 56.2 34 58.8
FvH4_6g09030 Fragaria vesca HOM05D000186 ORTHO05D006806 5.6e-07 56.2 32 62.5
FAN02G1194 Fragaria x ananassa HOM05D000186 ORTHO05D006806 5.6e-07 56.2 32 62.5
FAN05G4446 Fragaria x ananassa HOM05D000186 ORTHO05D006806 5.6e-07 56.2 32 62.5
FAN09G1435 Fragaria x ananassa HOM05D000186 ORTHO05D006806 5.6e-07 56.2 32 62.5
FAN14G3857 Fragaria x ananassa HOM05D000186 ORTHO05D006806 5.6e-07 56.2 32 62.5
Os08g0327100 Oryza sativa ssp. japonica HOM05D000186 ORTHO05D001124 5.6e-07 56.2 34 58.8
Sc02g0000110 Simmondsia chinensis HOM05D000186 ORTHO05D006806 5.6e-07 56.2 34 61.8
SGA_v2.0_scaffold373G50206 Striga asiatica HOM05D000186 ORTHO05D006806 5.6e-07 56.2 34 61.8
ATR1127G145 Amborella trichopoda HOM05D000186 ORTHO05D006806 7.3e-07 55.8 32 62.5
Ciclev10011265m.g Citrus clementina HOM05D000186 ORTHO05D006806 9.5e-07 55.5 34 58.8
Gohir.A05G177000 Gossypium hirsutum HOM05D000186 ORTHO05D001124 9.5e-07 55.5 34 58.8
Gohir.D05G180400 Gossypium hirsutum HOM05D000186 ORTHO05D001124 9.5e-07 55.5 34 58.8
Sed0018545 Sechium edule HOM05D000186 ORTHO05D006806 9.5e-07 55.5 34 58.8
SGA_v2.0_scaffold85G26583 Striga asiatica HOM05D000186 ORTHO05D006806 9.5e-07 55.5 34 61.8
Atru.chr8.16 Acer truncatum HOM05D000186 ORTHO05D006806 1.2e-06 55.1 32 65.6
Cfa016975 Carpinus fangiana HOM05D000186 ORTHO05D006806 1.2e-06 55.1 32 59.4
CDE04G3282 Ceratophyllum demersum HOM05D000186 ORTHO05D006806 1.2e-06 55.1 32 65.6
CDE06G2059 Ceratophyllum demersum HOM05D000186 ORTHO05D006806 1.2e-06 55.1 32 65.6
Gohir.A09G213674 Gossypium hirsutum HOM05D000186 ORTHO05D006806 1.2e-06 55.1 34 61.8
Gorai.006G236100 Gossypium raimondii HOM05D000186 ORTHO05D006806 1.2e-06 55.1 34 61.8
ATR0751G166 Amborella trichopoda HOM05D000186 ORTHO05D001124 1.6e-06 54.7 34 52.9
HanXRQChr10g0286521 Helianthus annuus HOM05D000186 ORTHO05D006806 1.6e-06 54.7 34 58.8
Sabra04G0159800 Salix brachista HOM05D000186 ORTHO05D006806 1.6e-06 54.7 34 58.8
Thecc.06G243700 Theobroma cacao HOM05D000186 ORTHO05D001124 1.6e-06 54.7 34 55.9
Atru.chr1.2233 Acer truncatum HOM05D000186 ORTHO05D001124 2.1e-06 54.3 34 55.9
Nn1g07680 Nelumbo nucifera HOM05D000186 ORTHO05D001124 2.1e-06 54.3 34 58.8
PGR004G0861 Punica granatum HOM05D000186 ORTHO05D001124 2.1e-06 54.3 34 55.9
Zm00001eb170740 Zea mays HOM05D000186 ORTHO05D001124 2.1e-06 54.3 34 55.9
CDE11G1099 Ceratophyllum demersum HOM05D000186 ORTHO05D001124 2.8e-06 53.9 34 55.9
Cc09_g00120 Coffea canephora HOM05D000186 ORTHO05D001124 2.8e-06 53.9 34 55.9
Duzib160G0532 Durio zibethinus HOM05D000186 ORTHO05D001124 2.8e-06 53.9 34 55.9
Hma1.2p1_0537F.1_g174160 Hydrangea macrophylla HOM05D000186 ORTHO05D006806 2.8e-06 53.9 31 64.5
MD04G1181600 Malus domestica HOM05D000186 ORTHO05D006806 2.8e-06 53.9 32 62.5
PSO541G2596 Papaver somniferum HOM05D000186 ORTHO05D001124 2.8e-06 53.9 34 55.9
PSO675G9386 Papaver somniferum HOM05D000186 ORTHO05D001124 2.8e-06 53.9 34 55.9
EL10Ac8g20279 Beta vulgaris HOM05D000186 ORTHO05D001124 3.6e-06 53.5 34 55.9
Oeu013183.3 Olea europaea HOM05D000186 ORTHO05D006806 3.6e-06 53.5 34 61.8
Oeu063838.1 Olea europaea HOM05D000186 ORTHO05D006806 3.6e-06 53.5 34 61.8
TWI63G1686 Tripterygium wilfordii HOM05D000186 ORTHO05D001124 3.6e-06 53.5 34 52.9
CANSAT56G4084 Cannabis sativa HOM05D000186 ORTHO05D001124 4.7e-06 53.1 34 55.9
Haze_21234 Corylus avellana HOM05D000186 ORTHO05D006806 4.7e-06 53.1 31 61.3
FvH4_3g00120 Fragaria vesca HOM05D000186 ORTHO05D001124 4.7e-06 53.1 34 52.9
FAN15G2996 Fragaria x ananassa HOM05D000186 ORTHO05D001124 4.7e-06 53.1 34 55.9
FAN21G0179 Fragaria x ananassa HOM05D000186 ORTHO05D001124 4.7e-06 53.1 34 52.9
Glyma.09G269900 Glycine max HOM05D000186 ORTHO05D006806 4.7e-06 53.1 32 56.2
Manes.08G015300 Manihot esculenta HOM05D000186 ORTHO05D001124 4.7e-06 53.1 34 55.9
Prupe.6G301000 Prunus persica HOM05D000186 ORTHO05D006806 4.7e-06 53.1 32 59.4
Sc17g0008070 Simmondsia chinensis HOM05D000186 ORTHO05D001124 4.7e-06 53.1 34 52.9
Gohir.A02G089300 Gossypium hirsutum HOM05D000186 ORTHO05D006806 6.2e-06 52.8 32 53.1
Gohir.D02G112200 Gossypium hirsutum HOM05D000186 ORTHO05D006806 6.2e-06 52.8 32 53.1
Gorai.005G129100 Gossypium raimondii HOM05D000186 ORTHO05D006806 6.2e-06 52.8 32 53.1
Lsat_1_v5_gn_1_130400 Lactuca sativa HOM05D000186 ORTHO05D001124 6.2e-06 52.8 34 52.9
Medtr7g074680 Medicago truncatula HOM05D000186 ORTHO05D006806 6.2e-06 52.8 32 56.2
SMO361G0335 Selaginella moellendorffii HOM05D000186 ORTHO05D001124 6.2e-06 52.8 32 53.1
Hund23358 Selenicereus undatus HOM05D000186 ORTHO05D001124 6.2e-06 52.8 34 52.9
THA.LOC104826256 Tarenaya hassleriana HOM05D000186 ORTHO05D005094 6.2e-06 52.8 32 53.1
TWI53G1137 Tripterygium wilfordii HOM05D000186 ORTHO05D006806 6.2e-06 52.8 32 56.2
TAR633G2554 Trochodendron aralioides HOM05D000186 ORTHO05D006806 6.2e-06 52.8 34 55.9
EL10Ac2g02411 Beta vulgaris HOM05D000186 ORTHO05D006806 8.1e-06 52.4 34 64.7
CANSAT21G1223 Cannabis sativa HOM05D000186 ORTHO05D006806 8.1e-06 52.4 32 59.4
Cpa.g.sc63.51 Carica papaya HOM05D000186 ORTHO05D006806 8.1e-06 52.4 30 60.0
CiPaw.10G084500 Carya illinoinensis HOM05D000186 ORTHO05D001124 8.1e-06 52.4 34 55.9
Duzib235G0979 Durio zibethinus HOM05D000186 ORTHO05D001124 8.1e-06 52.4 34 55.9
Eucgr.A00881 Eucalyptus grandis HOM05D000186 ORTHO05D006806 8.1e-06 52.4 34 58.8
THA.LOC104812787 Tarenaya hassleriana HOM05D000186 ORTHO05D001124 8.1e-06 52.4 34 52.9
TWI74G0607 Tripterygium wilfordii HOM05D000186 ORTHO05D006806 8.1e-06 52.4 32 56.2


User provided reference genes

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