Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 1.2e-184 650.2 445 100.0
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 1.3e-58 231.5 229 57.6
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 9.0e-52 208.8 358 47.2
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 6.5e-26 122.9 215 39.5
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.4e-25 121.7 225 38.7
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.6e-24 118.2 215 38.6
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 5.2e-23 113.2 208 38.5
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 5.2e-23 113.2 216 38.0
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 6.7e-23 112.8 207 38.2
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 1.1e-22 112.1 216 38.4
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.5e-22 111.7 216 38.0
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.0e-22 111.3 211 37.0
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 2.0e-22 111.3 209 38.8
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.4e-22 110.2 212 34.4
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 2.2e-21 107.8 207 36.2
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 2.8e-21 107.5 222 37.4
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 3.7e-21 107.1 206 36.9
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 8.2e-21 105.9 221 35.7
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.4e-20 105.1 224 34.8
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 3.1e-20 104.0 209 37.3
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.3e-20 103.2 212 35.8
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 9.1e-20 102.4 210 35.7
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.6e-19 101.7 212 35.4
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 2.6e-19 100.9 202 36.1
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 3.5e-19 100.5 208 35.6
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 4.5e-19 100.1 208 35.1
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.0e-18 99.0 209 35.4
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.7e-18 98.2 212 34.9
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.9e-18 97.4 223 33.6
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 2.9e-18 97.4 210 36.7
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 5.0e-18 96.7 218 34.4
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 5.0e-18 96.7 175 40.6
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 6.5e-18 96.3 224 34.4
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 8.5e-18 95.9 212 34.9
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 1.1e-17 95.5 208 37.0
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.9e-17 94.7 220 35.0
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 2.5e-17 94.4 217 35.5
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 3.2e-17 94.0 209 33.5
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 5.5e-17 93.2 217 35.0
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 5.5e-17 93.2 176 31.2
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 5.5e-17 93.2 205 33.2
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 5.5e-17 93.2 217 32.7
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 7.2e-17 92.8 225 32.0
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 9.4e-17 92.4 198 35.4
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.2e-16 92.0 231 32.5
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.6e-16 91.7 203 35.5
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 3.6e-16 90.5 177 38.4
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 3.6e-16 90.5 225 33.3
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 4.7e-16 90.1 219 32.4
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 4.7e-16 90.1 204 28.9
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 4.7e-16 90.1 221 33.0
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 8.0e-16 89.4 213 33.3
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 8.0e-16 89.4 208 36.1
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 8.0e-16 89.4 212 33.5
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.0e-15 89.0 181 38.1
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 1.4e-15 88.6 208 34.1
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.3e-15 87.8 208 33.7
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 3.0e-15 87.4 218 33.9
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 3.0e-15 87.4 217 34.6
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 3.0e-15 87.4 221 33.9
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 4.0e-15 87.0 201 32.3
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 4.0e-15 87.0 200 36.0
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 4.0e-15 87.0 206 33.0
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 5.2e-15 86.7 175 28.6
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.2e-15 86.7 213 32.9
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 5.2e-15 86.7 213 32.9
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 6.8e-15 86.3 215 36.3
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 6.8e-15 86.3 205 34.6
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 6.8e-15 86.3 208 33.2
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 8.8e-15 85.9 206 30.6
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.2e-14 85.5 222 32.9
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 2.0e-14 84.7 217 35.0
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 2.6e-14 84.3 209 34.0
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 3.4e-14 84.0 201 31.3
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 3.4e-14 84.0 189 28.6
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 7.5e-14 82.8 215 33.5
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.3e-13 82.0 202 30.2
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.7e-13 81.6 205 32.2
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 2.2e-13 81.3 218 32.6
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 2.2e-13 81.3 206 30.6
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.8e-13 80.9 248 29.4
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 2.8e-13 80.9 204 32.4
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 2.8e-13 80.9 205 31.7
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 3.7e-13 80.5 212 33.5
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 4.8e-13 80.1 211 33.2
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 4.8e-13 80.1 176 31.2
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 6.3e-13 79.7 174 29.9
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 8.3e-13 79.3 177 36.2
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 1.1e-12 79.0 208 33.7
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 1.1e-12 79.0 195 30.3
Zm00001eb109700 Zea mays HOM05D001332 ORTHO05D007191 1.1e-12 79.0 84 61.9
Zm00001eb194720 Zea mays HOM05D001332 ORTHO05D007191 1.1e-12 79.0 84 61.9
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 2.4e-12 77.8 175 33.7
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 2.4e-12 77.8 208 33.7
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 3.1e-12 77.4 133 41.4
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 7.0e-12 76.3 176 31.2
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 7.0e-12 76.3 206 34.5
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 9.1e-12 75.9 207 34.8
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.2e-11 75.5 168 31.0
Zm00001eb098780 Zea mays HOM05D001332 ORTHO05D007191 1.2e-11 75.5 84 59.5
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 1.6e-11 75.1 214 32.7
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 1.6e-11 75.1 146 39.7
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.0e-11 74.7 184 34.8
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 2.0e-11 74.7 142 38.0
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 4.5e-11 73.6 197 31.5
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 4.5e-11 73.6 194 34.5
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 4.5e-11 73.6 208 33.7
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.7e-11 72.8 176 31.2
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 7.7e-11 72.8 206 33.5
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 1.7e-10 71.6 190 30.5
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 2.2e-10 71.2 203 27.1
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 3.8e-10 70.5 176 26.7
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 3.8e-10 70.5 143 34.3
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 5.0e-10 70.1 177 33.9
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 5.0e-10 70.1 219 30.6
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 6.5e-10 69.7 222 28.8
Zm00001eb073820 Zea mays HOM05D001332 ORTHO05D007191 2.5e-09 67.8 77 62.3
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.2e-09 67.4 161 29.2
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 3.2e-09 67.4 225 26.2
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 7.2e-09 66.2 176 29.5
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.6e-08 63.9 189 31.2
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.7e-08 63.5 161 28.6
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 4.7e-08 63.5 179 31.3
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.4e-07 62.0 167 28.1
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 8.8e-07 59.3 179 30.7
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 1.2e-06 58.9 218 28.9
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 1.5e-06 58.5 105 41.9
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 4.4e-06 57.0 176 29.0
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 7.5e-06 56.2 107 36.4


User provided reference genes

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