Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0476000 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 2.3e-122 442.2 216 100.0
Zm00001eb290490 Zea mays HOM05D002277 ORTHO05D001770 5.4e-47 191.8 215 55.3
Os01g0824900 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 1.1e-31 141.0 221 44.8
MBI15_g33145_MAGBIO Magnolia biondii HOM05D002277 ORTHO05D001770 3.2e-15 86.3 77 54.5
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.6e-14 84.0 99 45.5
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.6e-14 84.0 99 45.5
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 2.7e-14 83.2 75 54.7
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 3.5e-14 82.8 76 56.6
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 4.6e-14 82.4 75 53.3
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 4.6e-14 82.4 75 53.3
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 4.6e-14 82.4 75 53.3
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 1.3e-13 80.9 75 57.3
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.8e-13 80.5 89 48.3
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 2.3e-13 80.1 75 53.3
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 2.3e-13 80.1 91 48.4
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.0e-13 79.7 75 54.7
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 5.1e-13 79.0 74 54.1
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 5.1e-13 79.0 85 45.9
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 6.7e-13 78.6 86 47.7
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.7e-13 78.2 137 37.2
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 8.7e-13 78.2 137 37.2
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 8.7e-13 78.2 74 52.7
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 8.7e-13 78.2 76 51.3
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 1.1e-12 77.8 76 51.3
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 1.1e-12 77.8 121 42.1
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 1.5e-12 77.4 90 48.9
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.5e-12 77.4 91 49.5
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.5e-12 77.4 75 54.7
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.9e-12 77.0 137 36.5
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.9e-12 77.0 80 51.2
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.9e-12 77.0 74 52.7
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.5e-12 76.6 89 46.1
Lj3g0001226 Lotus japonicus HOM05D002277 ORTHO05D001770 2.5e-12 76.6 171 36.3
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 4.3e-12 75.9 98 44.9
Ciclev10012858m.g Citrus clementina HOM05D002277 ORTHO05D001770 5.7e-12 75.5 77 51.9
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 5.7e-12 75.5 74 54.1
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 5.7e-12 75.5 203 34.5
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 7.4e-12 75.1 92 45.7
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 7.4e-12 75.1 99 41.4
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 9.6e-12 74.7 145 37.2
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 9.6e-12 74.7 92 48.9
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 1.3e-11 74.3 76 50.0
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 1.3e-11 74.3 71 52.1
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.3e-11 74.3 93 43.0
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 1.3e-11 74.3 159 39.6
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 1.6e-11 73.9 90 48.9
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.6e-11 73.9 74 50.0
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.6e-11 73.9 100 45.0
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 1.6e-11 73.9 92 45.7
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 2.1e-11 73.6 73 52.1
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 2.1e-11 73.6 75 53.3
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 2.8e-11 73.2 74 51.4
HPP92_019747 Vanilla planifolia HOM05D002277 ORTHO05D001770 2.8e-11 73.2 193 34.7
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 3.7e-11 72.8 75 48.0
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 3.7e-11 72.8 99 42.4
Oeu024724.1 Olea europaea HOM05D002277 ORTHO05D001770 3.7e-11 72.8 167 35.3
EL10Ac7g17051 Beta vulgaris HOM05D002277 ORTHO05D001770 4.8e-11 72.4 173 35.8
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 4.8e-11 72.4 146 36.3
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 6.3e-11 72.0 87 46.0
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 8.2e-11 71.6 85 45.9
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.2e-11 71.6 101 42.6
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 8.2e-11 71.6 68 52.9
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.1e-10 71.2 97 40.2
Ah.08g209750 Amaranthus hybridus HOM05D002277 ORTHO05D001770 1.4e-10 70.9 76 51.3
Phvul.010G067300 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.4e-10 70.9 73 54.8
Psat7g229920 Pisum sativum HOM05D002277 ORTHO05D001770 1.4e-10 70.9 77 50.6
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 1.8e-10 70.5 86 44.2
Lalb_Chr07g0190701 Lupinus albus HOM05D002277 ORTHO05D001770 1.8e-10 70.5 74 51.4
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 1.8e-10 70.5 71 52.1
VMungo0331G0789 Vigna mungo HOM05D002277 ORTHO05D001770 1.8e-10 70.5 73 54.8
Oeu064877.1 Olea europaea HOM05D002277 ORTHO05D001770 2.4e-10 70.1 74 47.3
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 2.4e-10 70.1 80 47.5
Ca_24067_v3 Cicer arietinum L. HOM05D002277 ORTHO05D001770 3.1e-10 69.7 73 52.1
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 3.1e-10 69.7 80 47.5
Oeu003236.1 Olea europaea HOM05D002277 ORTHO05D001770 3.1e-10 69.7 68 51.5
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 3.1e-10 69.7 76 50.0
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 4.1e-10 69.3 74 48.6
Glyma.03G037600 Glycine max HOM05D002277 ORTHO05D001770 4.1e-10 69.3 73 54.8
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 4.1e-10 69.3 80 47.5
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 4.1e-10 69.3 71 52.1
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 4.1e-10 69.3 75 48.0
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 4.1e-10 69.3 75 48.0
TWI77G0059 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 4.1e-10 69.3 75 48.0
Glyma.01G131200 Glycine max HOM05D002277 ORTHO05D001770 5.3e-10 68.9 87 47.1
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 5.3e-10 68.9 71 52.1
Gohir.D10G187900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 6.9e-10 68.6 93 41.9
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 6.9e-10 68.6 75 48.0
Lj1g0022794 Lotus japonicus HOM05D002277 ORTHO05D001770 6.9e-10 68.6 70 52.9
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 6.9e-10 68.6 84 48.8
Cpa.g.sc19.91 Carica papaya HOM05D002277 ORTHO05D001770 9.0e-10 68.2 65 50.8
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 9.0e-10 68.2 76 48.7
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.0e-10 68.2 75 48.0
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.2e-09 67.8 91 42.9
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 1.2e-09 67.8 75 50.7
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.2e-09 67.8 75 50.7
Medtr7g072540 Medicago truncatula HOM05D002277 ORTHO05D001770 1.2e-09 67.8 103 42.7
Ca_19777_v3 Cicer arietinum L. HOM05D002277 ORTHO05D001770 1.5e-09 67.4 198 32.8
Glyma.09G277500 Glycine max HOM05D002277 ORTHO05D001770 1.5e-09 67.4 91 42.9
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 2.0e-09 67.0 212 30.7
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.0e-09 67.0 81 48.1
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 2.0e-09 67.0 88 46.6
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 2.0e-09 67.0 75 46.7
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 2.6e-09 66.6 81 44.4
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 2.6e-09 66.6 81 45.7
Psat3g121440 Pisum sativum HOM05D002277 ORTHO05D001770 2.6e-09 66.6 93 45.2
PGR004G0074 Punica granatum HOM05D002277 ORTHO05D001770 2.6e-09 66.6 133 36.8
TPR.G4419 Trifolium pratense HOM05D002277 ORTHO05D001770 2.6e-09 66.6 69 53.6
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 3.4e-09 66.2 141 35.5
HPP92_011988 Vanilla planifolia HOM05D002277 ORTHO05D001770 3.4e-09 66.2 88 40.9
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 4.5e-09 65.9 74 47.3
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 4.5e-09 65.9 75 45.3
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 4.5e-09 65.9 84 44.0
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 4.5e-09 65.9 75 45.3
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 5.9e-09 65.5 91 41.8
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 5.9e-09 65.5 186 33.9
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 5.9e-09 65.5 67 52.2
Medtr4g029130 Medicago truncatula HOM05D002277 ORTHO05D001770 5.9e-09 65.5 77 48.1
DCAR_028908 Daucus carota HOM05D002277 ORTHO05D001770 7.6e-09 65.1 78 46.2
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 7.6e-09 65.1 75 45.3
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.6e-09 65.1 75 48.0
Lalb_Chr19g0124091 Lupinus albus HOM05D002277 ORTHO05D001770 7.6e-09 65.1 73 47.9
TAR287G0001 Trochodendron aralioides HOM05D002277 ORTHO05D001770 7.6e-09 65.1 63 47.6
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 1.0e-08 64.7 79 45.6
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 1.0e-08 64.7 70 48.6
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 1.3e-08 64.3 93 38.7
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 1.3e-08 64.3 72 47.2
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 1.7e-08 63.9 70 50.0
PGR031G1525 Punica granatum HOM05D002277 ORTHO05D001770 1.7e-08 63.9 105 41.0
HPP92_013855 Vanilla planifolia HOM05D002277 ORTHO05D001770 1.7e-08 63.9 46 60.9
HPP92_013870 Vanilla planifolia HOM05D002277 ORTHO05D001770 1.7e-08 63.9 46 60.9
Glyma.18G211300 Glycine max HOM05D002277 ORTHO05D001770 2.2e-08 63.5 92 41.3
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 2.9e-08 63.2 77 46.8
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 2.9e-08 63.2 97 41.2
Actinidia11526 Actinidia chinensis HOM05D002277 ORTHO05D001770 5.0e-08 62.4 50 56.0
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.0e-08 62.4 65 50.8
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 5.0e-08 62.4 74 44.6
RcHm_v2.0_Chr1g0371651 Rosa chinensis HOM05D002277 ORTHO05D001770 6.5e-08 62.0 80 48.8
CDE07G2070 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 8.5e-08 61.6 93 39.8
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 8.5e-08 61.6 80 48.8
BcaC01g05398 Brassica carinata HOM05D002277 ORTHO05D001770 1.4e-07 60.8 78 42.3
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 1.4e-07 60.8 160 33.1
Phvul.005G105700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.4e-07 60.8 70 48.6
Phvul.008G086700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.4e-07 60.8 186 32.3
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 1.4e-07 60.8 96 34.4
Zm00001eb282060 Zea mays HOM05D002277 ORTHO05D001770 1.4e-07 60.8 150 34.0
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 1.9e-07 60.5 98 38.8
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 2.5e-07 60.1 58 53.4
Peaxi162Scf00167g00134 Petunia axillaris HOM05D002277 ORTHO05D001770 2.5e-07 60.1 74 44.6
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.2e-07 59.7 141 36.2
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 3.2e-07 59.7 188 30.9
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.2e-07 59.3 80 47.5
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 5.5e-07 58.9 94 36.2
DCAR_015348 Daucus carota HOM05D002277 ORTHO05D001770 5.5e-07 58.9 167 32.9
FAN06G1120 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.5e-07 58.9 80 47.5
THA.LOC104824354 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 5.5e-07 58.9 81 43.2
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 5.5e-07 58.9 188 31.4
Thecc.09G361400 Theobroma cacao HOM05D002277 ORTHO05D001770 7.2e-07 58.5 73 47.9
COL.COLO4_37718 Corchorus olitorius HOM05D018436 ORTHO05D008524 9.3e-07 58.2 89 39.3
Nn2g11098 Nelumbo nucifera HOM05D002277 ORTHO05D001770 9.3e-07 58.2 49 59.2
TWI73G0449 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 9.3e-07 58.2 80 40.0
Zm00001eb350250 Zea mays HOM05D002277 ORTHO05D001770 9.3e-07 58.2 75 50.7
BcaC02g12718 Brassica carinata HOM05D002277 ORTHO05D001770 1.2e-06 57.8 60 48.3
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 1.2e-06 57.8 57 52.6
Sp4g22820 Schrenkiella parvula HOM05D002277 ORTHO05D001770 1.2e-06 57.8 60 48.3
A03p22770 Brassica napus HOM05D002277 ORTHO05D001770 1.6e-06 57.4 86 38.4
BraA03t11501Z Brassica rapa HOM05D002277 ORTHO05D001770 1.6e-06 57.4 86 38.4
CANSAT56G3800 Cannabis sativa HOM05D002277 ORTHO05D001770 1.6e-06 57.4 64 45.3
arahy.Tifrunner.gnm1.ann1.H4MVMY Arachis hypogaea HOM05D002277 ORTHO05D001770 2.1e-06 57.0 71 45.1
C04p02010 Brassica napus HOM05D002277 ORTHO05D001770 2.1e-06 57.0 57 50.9
BraA05t19171Z Brassica rapa HOM05D002277 ORTHO05D001770 2.1e-06 57.0 57 50.9
Sc11g0005700 Simmondsia chinensis HOM05D002277 ORTHO05D001770 2.1e-06 57.0 141 33.3
TWI09G0487 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 2.1e-06 57.0 85 37.6
C03p27010 Brassica napus HOM05D002277 ORTHO05D001770 2.7e-06 56.6 67 43.3
Medtr5g083970 Medicago truncatula HOM05D002277 ORTHO05D001770 2.7e-06 56.6 66 47.0
A05p01740 Brassica napus HOM05D002277 ORTHO05D001770 3.6e-06 56.2 56 51.8
CiPaw.10G163800 Carya illinoinensis HOM05D002277 ORTHO05D001770 3.6e-06 56.2 70 42.9
BolC4t21852H Brassica oleracea HOM05D002277 ORTHO05D001770 4.6e-06 55.8 57 49.1
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 4.6e-06 55.8 91 39.6
BcaB01g03537 Brassica carinata HOM05D002277 ORTHO05D001770 6.1e-06 55.5 86 39.5
CDE04G2321 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 6.1e-06 55.5 71 43.7
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 6.1e-06 55.5 161 31.7
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 7.9e-06 55.1 78 42.3


User provided reference genes

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