Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.5e-40 169.1 87 100.0
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 3.6e-18 94.7 60 75.0
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 6.4e-15 84.0 50 80.0
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 8.4e-15 83.6 54 74.1
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 1.1e-14 83.2 50 74.0
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.1e-14 83.2 50 74.0
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.1e-14 83.2 50 74.0
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 1.1e-14 83.2 50 74.0
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 1.4e-14 82.8 50 76.0
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 1.9e-14 82.4 50 78.0
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 1.9e-14 82.4 50 80.0
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 3.2e-14 81.6 50 74.0
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 3.2e-14 81.6 50 74.0
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 3.2e-14 81.6 50 78.0
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 4.2e-14 81.3 50 74.0
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 4.2e-14 81.3 50 74.0
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 4.2e-14 81.3 50 74.0
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 5.4e-14 80.9 50 76.0
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 7.1e-14 80.5 50 76.0
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 1.2e-13 79.7 51 70.6
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.2e-13 79.7 54 70.4
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 1.2e-13 79.7 49 75.5
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 1.6e-13 79.3 50 74.0
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 1.6e-13 79.3 52 73.1
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 2.7e-13 78.6 53 71.7
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 2.7e-13 78.6 53 73.6
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 2.7e-13 78.6 50 76.0
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 2.7e-13 78.6 50 74.0
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 2.7e-13 78.6 50 72.0
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 3.5e-13 78.2 50 76.0
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 3.5e-13 78.2 54 68.5
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 3.5e-13 78.2 50 74.0
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 3.5e-13 78.2 52 73.1
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 4.6e-13 77.8 50 72.0
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 6.0e-13 77.4 50 70.0
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 6.0e-13 77.4 50 74.0
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 6.0e-13 77.4 50 74.0
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 6.0e-13 77.4 50 74.0
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 7.8e-13 77.0 50 74.0
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 7.8e-13 77.0 59 66.1
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.8e-13 77.0 50 74.0
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 7.8e-13 77.0 50 74.0
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 7.8e-13 77.0 50 74.0
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 1.0e-12 76.6 50 72.0
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.0e-12 76.6 50 74.0
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.0e-12 76.6 50 74.0
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 1.0e-12 76.6 50 74.0
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 1.0e-12 76.6 50 72.0
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 1.3e-12 76.3 50 72.0
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.7e-12 75.9 50 70.0
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 1.7e-12 75.9 59 61.0
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 1.7e-12 75.9 50 72.0
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 2.3e-12 75.5 50 70.0
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 2.3e-12 75.5 50 70.0
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 2.3e-12 75.5 50 70.0
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 2.3e-12 75.5 50 70.0
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 2.3e-12 75.5 50 70.0
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.0e-12 75.1 50 72.0
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 3.0e-12 75.1 50 68.0
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 3.0e-12 75.1 50 72.0
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 3.0e-12 75.1 50 70.0
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 3.0e-12 75.1 50 72.0
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 3.0e-12 75.1 50 68.0
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 3.9e-12 74.7 51 68.6
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 3.9e-12 74.7 50 70.0
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 3.9e-12 74.7 50 68.0
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 3.9e-12 74.7 50 70.0
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 5.1e-12 74.3 50 72.0
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 5.1e-12 74.3 50 72.0
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 5.1e-12 74.3 50 72.0
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 5.1e-12 74.3 50 72.0
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 5.1e-12 74.3 50 70.0
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 5.1e-12 74.3 52 73.1
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 5.1e-12 74.3 50 70.0
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 6.6e-12 73.9 57 66.7
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 6.6e-12 73.9 50 70.0
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 6.6e-12 73.9 50 72.0
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 6.6e-12 73.9 51 64.7
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 6.6e-12 73.9 50 70.0
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 6.6e-12 73.9 50 68.0
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 8.7e-12 73.6 50 70.0
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 8.7e-12 73.6 50 74.0
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 8.7e-12 73.6 50 70.0
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 8.7e-12 73.6 50 66.0
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 8.7e-12 73.6 59 62.7
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 8.7e-12 73.6 54 63.0
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 8.7e-12 73.6 50 72.0
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 1.1e-11 73.2 50 70.0
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 1.1e-11 73.2 50 70.0
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 1.1e-11 73.2 50 72.0
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 1.1e-11 73.2 50 72.0
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 1.1e-11 73.2 50 68.0
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 1.1e-11 73.2 54 68.5
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 1.5e-11 72.8 65 56.9
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 1.5e-11 72.8 50 68.0
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.5e-11 72.8 50 68.0
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 1.5e-11 72.8 50 66.0
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 1.5e-11 72.8 50 66.0
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.9e-11 72.4 51 68.6
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 1.9e-11 72.4 50 70.0
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 2.5e-11 72.0 50 68.0
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 2.5e-11 72.0 50 68.0
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 2.5e-11 72.0 50 70.0
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 2.5e-11 72.0 50 70.0
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 2.5e-11 72.0 50 70.0
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 2.5e-11 72.0 50 66.0
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 2.5e-11 72.0 50 68.0
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 3.3e-11 71.6 50 72.0
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 3.3e-11 71.6 50 70.0
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 3.3e-11 71.6 51 64.7
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 3.3e-11 71.6 52 65.4
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 3.3e-11 71.6 50 70.0
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 4.3e-11 71.2 50 66.0
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 4.3e-11 71.2 50 68.0
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 4.3e-11 71.2 54 64.8
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 5.6e-11 70.9 50 68.0
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 5.6e-11 70.9 50 68.0
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 5.6e-11 70.9 50 68.0
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 5.6e-11 70.9 50 68.0
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 5.6e-11 70.9 50 68.0
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 5.6e-11 70.9 50 68.0
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 5.6e-11 70.9 50 68.0
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 5.6e-11 70.9 50 68.0
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 5.6e-11 70.9 50 68.0
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 5.6e-11 70.9 52 65.4
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 5.6e-11 70.9 50 66.0
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 7.3e-11 70.5 50 68.0
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 7.3e-11 70.5 50 68.0
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 7.3e-11 70.5 50 68.0
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 7.3e-11 70.5 50 66.0
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 7.3e-11 70.5 50 68.0
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 9.6e-11 70.1 53 62.3
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 9.6e-11 70.1 50 68.0
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 9.6e-11 70.1 52 63.5
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.3e-10 69.7 53 64.2
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.3e-10 69.7 53 64.2
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 1.3e-10 69.7 50 66.0
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.3e-10 69.7 50 68.0
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 1.6e-10 69.3 53 62.3
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 1.6e-10 69.3 50 64.0
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 1.6e-10 69.3 52 67.3
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 1.6e-10 69.3 51 68.6
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 2.1e-10 68.9 50 66.0
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 2.1e-10 68.9 50 64.0
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.1e-10 68.9 50 68.0
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 2.1e-10 68.9 50 66.0
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 2.8e-10 68.6 52 63.5
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 2.8e-10 68.6 51 66.7
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 2.8e-10 68.6 59 61.0
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 2.8e-10 68.6 59 59.3
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 3.6e-10 68.2 54 61.1
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 4.8e-10 67.8 50 66.0
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 4.8e-10 67.8 60 56.7
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 8.1e-10 67.0 50 70.0
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 8.1e-10 67.0 54 61.1
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 8.1e-10 67.0 50 66.0
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 2.4e-09 65.5 50 60.0
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 3.1e-09 65.1 61 55.7
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 4.0e-09 64.7 52 65.4
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 9.0e-09 63.5 49 65.3
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 2.6e-08 62.0 49 65.3
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 1.4e-06 56.2 43 62.8
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 7.1e-06 53.9 34 76.5


User provided reference genes

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