Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 6.2e-45 183.7 91 100.0
Zm00001eb347630 Zea mays HOM05D042109 ORTHO05D037005 6.5e-18 94.0 97 56.7
Os01g0847100 Oryza sativa ssp. japonica HOM05D042109 ORTHO05D037005 7.7e-11 70.5 85 42.4
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 1.3e-10 69.7 85 45.9
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 5.0e-10 67.8 85 41.2
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.4e-09 66.2 80 48.8
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.9e-09 65.9 85 44.7
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 4.2e-09 64.7 92 43.5
COL.COLO4_18585 Corchorus olitorius HOM05D007574 ORTHO05D007552 5.5e-09 64.3 82 40.2
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 1.6e-08 62.8 47 57.4
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.1e-08 62.4 93 37.6
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 6.1e-08 60.8 77 48.1
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.4e-07 59.7 50 56.0
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.3e-07 58.9 47 57.4
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 2.3e-07 58.9 98 36.7
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 3.0e-07 58.5 86 43.0
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 3.9e-07 58.2 81 50.6
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 3.9e-07 58.2 47 59.6
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 3.9e-07 58.2 94 38.3
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 3.9e-07 58.2 88 38.6
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 3.9e-07 58.2 99 34.3
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 3.9e-07 58.2 70 42.9
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 5.1e-07 57.8 79 46.8
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 5.1e-07 57.8 47 55.3
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 5.1e-07 57.8 73 42.5
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 5.1e-07 57.8 52 53.8
Thecc.09G313900 Theobroma cacao HOM05D007574 ORTHO05D007552 5.1e-07 57.8 66 42.4
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 6.7e-07 57.4 94 36.2
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 6.7e-07 57.4 88 42.0
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 8.8e-07 57.0 47 51.1
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 1.1e-06 56.6 48 54.2
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.1e-06 56.6 48 54.2
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 1.1e-06 56.6 93 37.6
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.1e-06 56.6 68 42.6
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 1.1e-06 56.6 87 37.9
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 1.5e-06 56.2 80 43.8
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 1.5e-06 56.2 84 38.1
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 2.0e-06 55.8 50 54.0
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 2.0e-06 55.8 48 58.3
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 2.0e-06 55.8 88 38.6
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 2.0e-06 55.8 96 37.5
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 2.0e-06 55.8 96 37.5
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 2.6e-06 55.5 50 52.0
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 3.3e-06 55.1 93 40.9
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 4.4e-06 54.7 78 47.4
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 4.4e-06 54.7 51 47.1
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 4.4e-06 54.7 47 55.3
Zm00001eb148040 Zea mays HOM05D042109 ORTHO05D037005 4.4e-06 54.7 96 39.6
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 5.7e-06 54.3 88 35.2
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 5.7e-06 54.3 95 34.7
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 5.7e-06 54.3 97 39.2
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 5.7e-06 54.3 50 50.0
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 5.7e-06 54.3 50 50.0
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 5.7e-06 54.3 50 50.0
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 7.4e-06 53.9 47 55.3


User provided reference genes

Program Settings