Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 0.0e+00 1140.9 585 100.0
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 8.3e-268 926.8 581 80.4
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 2.3e-180 636.3 592 57.3
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 3.3e-179 632.5 595 56.3
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 9.5e-179 630.9 593 55.6
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 5.2e-177 625.2 593 56.0
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 3.5e-173 612.5 599 53.6
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 4.5e-173 612.1 598 54.0
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 1.3e-172 610.5 597 54.9
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 2.3e-172 609.8 594 54.5
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 3.8e-172 609.0 594 54.0
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 5.0e-172 608.6 598 53.3
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 5.0e-172 608.6 601 53.6
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 2.5e-171 606.3 586 54.8
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 3.3e-171 605.9 593 54.6
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 5.6e-171 605.1 593 55.6
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 9.5e-171 604.4 587 55.2
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 2.8e-170 602.8 599 52.8
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 4.7e-170 602.1 600 54.2
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 1.0e-169 600.9 615 53.5
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 1.0e-169 600.9 592 54.4
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 1.4e-169 600.5 592 53.7
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 5.2e-169 598.6 595 53.4
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 8.9e-169 597.8 602 54.3
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 8.9e-169 597.8 591 53.3
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 1.5e-168 597.0 591 52.6
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 2.0e-168 596.7 591 52.8
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 1.7e-167 593.6 581 53.2
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 2.9e-167 592.8 602 54.0
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 4.9e-167 592.0 587 52.0
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 1.1e-166 590.9 568 55.8
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 2.4e-166 589.7 588 52.0
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 1.6e-165 587.0 588 51.9
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 1.6e-165 587.0 584 53.9
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 2.0e-165 586.6 582 52.7
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 2.0e-165 586.6 590 52.5
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 2.7e-165 586.3 590 53.6
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 2.7e-165 586.3 592 54.2
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 2.7e-165 586.3 592 52.4
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 3.5e-165 585.9 581 52.8
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 6.0e-165 585.1 592 52.4
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 1.0e-164 584.3 586 52.7
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 1.3e-164 583.9 582 54.0
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 1.7e-164 583.6 592 52.0
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.7e-164 583.6 598 52.7
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 3.9e-164 582.4 584 53.9
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 8.6e-164 581.3 588 52.2
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 8.6e-164 581.3 589 53.1
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 1.1e-163 580.9 587 53.3
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 1.5e-163 580.5 590 53.1
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 4.3e-163 578.9 599 52.4
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 5.6e-163 578.6 582 53.6
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 5.6e-163 578.6 581 52.8
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 5.6e-163 578.6 582 53.1
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 1.2e-162 577.4 585 51.8
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 2.1e-162 576.6 589 53.0
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 2.1e-162 576.6 563 54.5
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 3.6e-162 575.9 592 53.4
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 8.0e-162 574.7 582 53.1
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 1.1e-161 574.3 617 51.4
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 1.5e-160 570.5 581 53.0
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 2.0e-160 570.1 600 52.0
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 5.8e-160 568.5 601 52.7
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 3.7e-159 565.8 591 51.6
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 8.3e-159 564.7 599 52.4
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 8.3e-159 564.7 600 51.8
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 2.4e-158 563.1 584 52.2
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 5.4e-158 562.0 594 50.2
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 7.0e-158 561.6 590 51.7
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 3.5e-157 559.3 574 52.1
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 3.5e-157 559.3 596 51.0
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 3.5e-157 559.3 579 50.9
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 4.6e-157 558.9 597 53.3
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 7.8e-157 558.1 597 52.3
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 1.3e-156 557.4 586 50.9
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 2.3e-156 556.6 598 49.8
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 6.6e-156 555.1 580 51.7
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 1.2e-154 550.8 591 50.6
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.6e-154 550.4 590 51.7
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 2.8e-154 549.7 590 51.0
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 4.7e-154 548.9 590 51.2
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 1.4e-153 547.4 618 50.8
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 3.1e-153 546.2 590 50.7
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 5.2e-153 545.4 595 49.6
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 5.2e-153 545.4 595 49.6
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 6.8e-153 545.0 588 51.0
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 6.8e-153 545.0 587 50.9
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 1.5e-152 543.9 584 50.2
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 1.5e-152 543.9 584 50.2
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 2.2e-151 540.0 588 50.0
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 7.8e-149 531.6 581 50.1
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 5.6e-147 525.4 639 46.0
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 1.2e-144 517.7 592 48.8
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.4e-144 516.2 592 48.5
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.9e-143 512.3 584 49.1
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 8.4e-143 511.5 588 48.3
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 1.1e-142 511.1 591 49.6
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.2e-141 507.7 501 56.3
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 1.2e-141 507.7 587 48.0
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 3.5e-141 506.1 588 47.8
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 7.8e-141 505.0 588 48.0
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 7.8e-141 505.0 594 45.3
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 7.8e-141 505.0 594 45.3
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 9.3e-134 481.5 475 54.7
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 1.8e-124 450.7 588 44.9
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 4.8e-122 442.6 465 51.2
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 3.1e-113 413.3 576 44.3
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 1.3e-90 338.2 519 39.7
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 6.8e-76 289.3 210 66.7
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 8.8e-76 288.9 318 50.6
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 2.8e-74 283.9 615 31.7
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 3.7e-74 283.5 211 63.5
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 7.7e-72 275.8 612 30.9
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 7.0e-65 252.7 590 30.8
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 1.5e-62 245.0 219 55.7
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 7.3e-54 216.1 340 41.2
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 7.8e-48 196.1 575 29.9
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.3e-39 168.7 237 44.3
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.1e-36 159.1 159 56.0
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-30 136.0 623 25.0
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 6.4e-26 123.2 292 29.8
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 8.4e-26 122.9 124 55.6
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 8.7e-23 112.8 76 69.7
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 3.3e-22 110.9 101 48.5
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 3.5e-16 90.9 84 58.3
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 3.5e-16 90.9 84 58.3
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.3e-15 89.0 108 49.1
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.5e-14 85.5 93 51.6
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.2e-10 71.6 67 49.3


User provided reference genes

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