Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0429500 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D009174 3.5e-42 174.5 85 100.0
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 1.6e-15 85.9 43 88.4
CARHR034180 Cardamine hirsuta HOM05D003774 ORTHO05D009174 2.2e-15 85.5 44 88.6
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 2.8e-15 85.1 44 86.4
Nn1g08406 Nelumbo nucifera HOM05D003774 ORTHO05D009174 2.8e-15 85.1 43 88.4
HPP92_011935 Vanilla planifolia HOM05D003774 ORTHO05D009174 2.8e-15 85.1 43 86.0
HPP92_011955 Vanilla planifolia HOM05D003774 ORTHO05D009174 2.8e-15 85.1 43 86.0
Glyma.06G325100 Glycine max HOM05D003774 ORTHO05D009174 4.8e-15 84.3 43 88.4
AL1G50230 Arabidopsis lyrata HOM05D003774 ORTHO05D009174 6.3e-15 84.0 44 86.4
AT1G35420 Arabidopsis thaliana HOM05D003774 ORTHO05D009174 6.3e-15 84.0 44 86.4
Carub.0001s3302 Capsella rubella HOM05D003774 ORTHO05D009174 6.3e-15 84.0 44 86.4
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 6.3e-15 84.0 43 83.7
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 6.3e-15 84.0 43 83.7
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 6.3e-15 84.0 43 83.7
Manes.02G198600 Manihot esculenta HOM05D003774 ORTHO05D009174 6.3e-15 84.0 42 90.5
Zm00001eb348780 Zea mays HOM05D003774 ORTHO05D009174 6.3e-15 84.0 43 86.0
Duzib211G0171 Durio zibethinus HOM05D003774 ORTHO05D009174 8.2e-15 83.6 43 83.7
HanXRQChr02g0036581 Helianthus annuus HOM05D003774 ORTHO05D009174 8.2e-15 83.6 46 80.4
Lj3g0005610 Lotus japonicus HOM05D003774 ORTHO05D009174 8.2e-15 83.6 41 90.2
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 8.2e-15 83.6 43 83.7
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 8.2e-15 83.6 46 80.4
TAR624G0812 Trochodendron aralioides HOM05D003774 ORTHO05D009174 8.2e-15 83.6 43 86.0
Actinidia29410 Actinidia chinensis HOM05D003774 ORTHO05D009174 1.1e-14 83.2 43 83.7
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 1.1e-14 83.2 43 81.4
Dinv19855 Davidia involucrata HOM05D003774 ORTHO05D009174 1.1e-14 83.2 43 86.0
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 1.1e-14 83.2 46 82.6
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 1.1e-14 83.2 43 83.7
MSTRG.22470 Avicennia marina HOM05D003774 ORTHO05D009174 1.4e-14 82.8 44 81.8
CiPaw.07G235700 Carya illinoinensis HOM05D003774 ORTHO05D009174 1.4e-14 82.8 43 81.4
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 1.4e-14 82.8 43 86.0
Sp1g30140 Schrenkiella parvula HOM05D003774 ORTHO05D009174 1.4e-14 82.8 51 76.5
BcaNung06721 Brassica carinata HOM05D003774 ORTHO05D009174 1.8e-14 82.4 44 84.1
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 1.8e-14 82.4 43 86.0
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 1.8e-14 82.4 43 83.7
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 2.4e-14 82.0 43 83.7
Phvul.005G000200 Phaseolus vulgaris HOM05D003774 ORTHO05D009174 2.4e-14 82.0 43 86.0
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 2.4e-14 82.0 43 86.0
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 3.1e-14 81.6 43 81.4
PSO017G5271 Papaver somniferum HOM05D003774 ORTHO05D009174 3.1e-14 81.6 43 90.7
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 3.1e-14 81.6 43 81.4
THA.LOC104816521 Tarenaya hassleriana HOM05D003774 ORTHO05D009174 3.1e-14 81.6 44 79.5
PSO170G6059 Papaver somniferum HOM05D003774 ORTHO05D009174 4.1e-14 81.3 43 88.4
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 4.1e-14 81.3 43 83.7
Eucgr.F02990 Eucalyptus grandis HOM05D003774 ORTHO05D009174 6.9e-14 80.5 43 79.1
FAN22G1282 Fragaria x ananassa HOM05D003774 ORTHO05D009174 6.9e-14 80.5 43 79.1
RcHm_v2.0_Chr7g0227151 Rosa chinensis HOM05D003774 ORTHO05D009174 6.9e-14 80.5 43 79.1
SEGI_30677 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 6.9e-14 80.5 42 85.7
SEGI_34335 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 6.9e-14 80.5 42 85.7
BcaB07g33408 Brassica carinata HOM05D003774 ORTHO05D009174 9.0e-14 80.1 43 83.7
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 9.0e-14 80.1 44 81.8
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 9.0e-14 80.1 44 81.8
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 9.0e-14 80.1 44 81.8
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 9.0e-14 80.1 44 81.8
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 9.0e-14 80.1 44 81.8
CDE02G0175 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 9.0e-14 80.1 46 78.3
Cc10_g09600 Coffea canephora HOM05D003774 ORTHO05D009174 9.0e-14 80.1 43 83.7
SGA_v2.0_scaffold25G11034 Striga asiatica HOM05D003774 ORTHO05D009174 9.0e-14 80.1 42 83.3
ATR0320G028 Amborella trichopoda HOM05D003774 ORTHO05D009174 1.2e-13 79.7 41 87.8
EL10Ac1g00136 Beta vulgaris HOM05D003774 ORTHO05D009174 1.2e-13 79.7 43 81.4
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 1.2e-13 79.7 43 81.4
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 1.2e-13 79.7 43 81.4
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.5e-13 79.3 46 78.3
CDE08G1139 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.5e-13 79.3 46 78.3
Thhalv10001825m.g Eutrema salsugineum HOM05D003774 ORTHO05D009174 1.5e-13 79.3 44 79.5
FvH4_5g31620 Fragaria vesca HOM05D003774 ORTHO05D009174 1.5e-13 79.3 43 76.7
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.5e-13 79.3 43 76.7
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 1.5e-13 79.3 48 70.8
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 1.5e-13 79.3 43 81.4
TPR.G25492 Trifolium pratense HOM05D003774 ORTHO05D009174 1.5e-13 79.3 43 79.1
Medtr3g005060 Medicago truncatula HOM05D003774 ORTHO05D009174 2.0e-13 79.0 43 81.4
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 2.6e-13 78.6 43 83.7
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.6e-13 78.6 43 79.1
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.6e-13 78.6 43 79.1
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 4.5e-13 77.8 43 79.1
Sc09g0006790 Simmondsia chinensis HOM05D003774 ORTHO05D009174 4.5e-13 77.8 41 85.4
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 5.9e-13 77.4 43 76.7
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 7.7e-13 77.0 43 76.7
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 7.7e-13 77.0 46 76.1
Psat1g003280 Pisum sativum HOM05D003774 ORTHO05D009174 7.7e-13 77.0 43 76.7
SalBow6G0569 Salvia bowleyana HOM05D003774 ORTHO05D009174 7.7e-13 77.0 43 76.7
SalBow6G5656 Salvia bowleyana HOM05D003774 ORTHO05D009174 7.7e-13 77.0 43 76.7
AUR62004600 Chenopodium quinoa HOM05D003774 ORTHO05D009174 1.0e-12 76.6 43 76.7
QL02p014374 Quercus lobata HOM05D003774 ORTHO05D009174 2.2e-12 75.5 43 74.4
Migut.N03372 Erythranthe guttata HOM05D003774 ORTHO05D009174 2.9e-12 75.1 43 74.4
CSS0038880 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 6.5e-12 73.9 43 74.4
MELO3C022228.2 Cucumis melo HOM05D003774 ORTHO05D009174 6.5e-12 73.9 44 70.5
Oeu013896.2 Olea europaea HOM05D003774 ORTHO05D009174 6.5e-12 73.9 43 69.8
Ah.05g178580 Amaranthus hybridus HOM05D003774 ORTHO05D009174 8.5e-12 73.6 43 74.4
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 1.1e-11 73.2 42 78.6
ClCG08G000170 Citrullus lanatus HOM05D003774 ORTHO05D009174 2.1e-10 68.9 43 67.4
CSS0038100 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 2.7e-10 68.6 43 69.8
CSS0003364 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 3.6e-10 68.2 43 69.8
CsaV3_5G040550 Cucumis sativus L. HOM05D003774 ORTHO05D009174 6.1e-10 67.4 43 67.4
Mapoly0002s0135 Marchantia polymorpha HOM05D003774 ORTHO05D009174 6.1e-10 67.4 42 64.3
Pp3c17_9260 Physcomitrium patens HOM05D003774 ORTHO05D009174 6.1e-10 67.4 45 64.4
Pp3c14_5820 Physcomitrium patens HOM05D003774 ORTHO05D009174 1.9e-08 62.4 44 61.4
Pp3c10_21530 Physcomitrium patens HOM05D003774 ORTHO05D009174 1.7e-07 59.3 43 55.8


User provided reference genes

Program Settings