Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 4.8e-32 140.6 73 100.0
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 5.2e-18 94.0 59 88.1
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 1.0e-13 79.7 54 79.6
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.9e-13 77.8 55 76.4
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 1.1e-12 76.3 54 77.8
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 1.1e-12 76.3 54 79.6
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.5e-12 75.9 61 75.4
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 7.3e-12 73.6 56 75.0
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 7.3e-12 73.6 58 75.9
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 9.5e-12 73.2 53 79.2
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 9.5e-12 73.2 57 75.4
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 9.5e-12 73.2 58 74.1
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 1.2e-11 72.8 57 73.7
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.2e-11 72.8 58 72.4
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.2e-11 72.8 54 74.1
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 1.6e-11 72.4 57 68.4
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 2.1e-11 72.0 58 75.9
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 2.1e-11 72.0 55 76.4
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 2.1e-11 72.0 52 76.9
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 2.1e-11 72.0 55 76.4
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.8e-11 71.6 52 75.0
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 2.8e-11 71.6 56 73.2
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 4.7e-11 70.9 57 73.7
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 4.7e-11 70.9 58 69.0
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 6.1e-11 70.5 55 74.5
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 8.0e-11 70.1 55 78.2
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 8.0e-11 70.1 50 78.0
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 8.0e-11 70.1 58 70.7
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 8.0e-11 70.1 58 70.7
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 8.0e-11 70.1 54 72.2
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.0e-10 69.7 57 70.2
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 1.0e-10 69.7 59 74.6
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 1.4e-10 69.3 54 75.9
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 1.8e-10 68.9 59 69.5
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 2.3e-10 68.6 59 72.9
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 3.1e-10 68.2 59 71.2
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 3.1e-10 68.2 59 71.2
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 3.1e-10 68.2 58 72.4
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 5.2e-10 67.4 57 70.2
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 5.2e-10 67.4 56 67.9
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 6.8e-10 67.0 57 68.4
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 6.8e-10 67.0 57 70.2
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 6.8e-10 67.0 58 69.0
Os01g0332700 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 8.9e-10 66.6 41 90.2
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 8.9e-10 66.6 57 70.2
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 1.2e-09 66.2 56 66.1
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.2e-09 66.2 55 70.9
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 1.5e-09 65.9 54 75.9
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 1.5e-09 65.9 60 65.0
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 2.6e-09 65.1 52 75.0
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 3.4e-09 64.7 57 71.9
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 3.4e-09 64.7 55 70.9
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 3.4e-09 64.7 51 76.5
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.4e-09 64.7 48 79.2
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 4.4e-09 64.3 52 67.3
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 7.5e-09 63.5 58 69.0
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 7.5e-09 63.5 55 67.3
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 7.5e-09 63.5 56 66.1
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 9.8e-09 63.2 48 72.9
Os11g0425600 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 9.8e-09 63.2 42 78.6
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.7e-08 62.4 50 72.0
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 2.2e-08 62.0 49 75.5
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 2.2e-08 62.0 49 77.6
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.2e-08 62.0 49 73.5
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 2.2e-08 62.0 49 73.5
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.2e-08 62.0 56 66.1
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 2.9e-08 61.6 47 74.5
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 2.9e-08 61.6 49 77.6
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 2.9e-08 61.6 48 81.2
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 2.9e-08 61.6 52 71.2
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.7e-08 61.2 48 75.0
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 3.7e-08 61.2 48 75.0
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 4.9e-08 60.8 50 76.0
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 4.9e-08 60.8 48 77.1
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 4.9e-08 60.8 49 77.6
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.9e-08 60.8 49 77.6
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 4.9e-08 60.8 46 73.9
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 4.9e-08 60.8 58 65.5
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 4.9e-08 60.8 48 79.2
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 6.4e-08 60.5 47 78.7
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 6.4e-08 60.5 47 78.7
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 8.3e-08 60.1 58 63.8
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 1.1e-07 59.7 53 73.6
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 1.9e-07 58.9 48 75.0
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 1.9e-07 58.9 46 76.1
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.9e-07 58.9 47 76.6
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 1.9e-07 58.9 42 73.8
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 2.4e-07 58.5 45 77.8
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 3.2e-07 58.2 48 72.9
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 3.2e-07 58.2 55 61.8
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 5.4e-07 57.4 47 74.5
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 5.4e-07 57.4 48 70.8
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 5.4e-07 57.4 44 79.5
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 7.0e-07 57.0 47 74.5
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 7.0e-07 57.0 47 74.5
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 7.0e-07 57.0 47 74.5
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 9.2e-07 56.6 45 75.6
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 9.2e-07 56.6 58 60.3
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 1.2e-06 56.2 47 70.2
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 1.2e-06 56.2 52 67.3
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 2.0e-06 55.5 51 66.7
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 2.7e-06 55.1 46 69.6
CSS0011663 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 4.6e-06 54.3 34 82.4
TAR633G2004 Trochodendron aralioides HOM05D005458 ORTHO05D005672 6.0e-06 53.9 35 77.1
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 7.8e-06 53.5 44 75.0
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 7.8e-06 53.5 57 61.4


User provided reference genes

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