Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0397800 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D009286 2.0e-66 255.8 144 100.0
Zm00001eb287490 Zea mays HOM05D000001 ORTHO05D009286 1.6e-23 113.2 119 59.7
MBI17_g31750_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009286 5.4e-11 71.6 67 58.2
EL10Ac6g14022 Beta vulgaris HOM05D000001 ORTHO05D009286 9.3e-11 70.9 63 58.7
CDE05G2030 Ceratophyllum demersum HOM05D000001 ORTHO05D009286 3.5e-10 68.9 57 54.4
AT3G05345 Arabidopsis thaliana HOM05D000001 ORTHO05D009286 1.0e-09 67.4 67 49.3
Sc06g0003290 Simmondsia chinensis HOM05D000001 ORTHO05D009286 1.0e-09 67.4 58 56.9
Nn1g02236 Nelumbo nucifera HOM05D000001 ORTHO05D009286 1.3e-09 67.0 56 53.6
AUR62038496 Chenopodium quinoa HOM05D000001 ORTHO05D009286 1.8e-09 66.6 59 59.3
MD12G1219200 Malus domestica HOM05D000001 ORTHO05D009286 1.8e-09 66.6 61 55.7
Carub.0003s0462 Capsella rubella HOM05D000001 ORTHO05D009286 2.3e-09 66.2 67 47.8
Oeu017485.1 Olea europaea HOM05D000001 ORTHO05D009286 2.3e-09 66.2 60 53.3
AUR62014152 Chenopodium quinoa HOM05D000001 ORTHO05D009286 3.9e-09 65.5 59 59.3
HPP92_013683 Vanilla planifolia HOM05D000001 ORTHO05D009286 3.9e-09 65.5 57 61.4
Hund07071 Selenicereus undatus HOM05D000001 ORTHO05D009286 5.1e-09 65.1 61 52.5
CiPaw.07G017900 Carya illinoinensis HOM05D000001 ORTHO05D009286 1.1e-08 63.9 63 49.2
THA.LOC104821713 Tarenaya hassleriana HOM05D000001 ORTHO05D009286 1.1e-08 63.9 62 46.8
Actinidia23635 Actinidia chinensis HOM05D000001 ORTHO05D009286 2.5e-08 62.8 52 61.5
QL03p007002 Quercus lobata HOM05D000001 ORTHO05D009286 2.5e-08 62.8 52 59.6
Sp3g04210 Schrenkiella parvula HOM05D000001 ORTHO05D009286 2.5e-08 62.8 57 47.4
Aqoxy2G03342 Aquilegia oxysepala HOM05D000001 ORTHO05D009286 4.3e-08 62.0 66 47.0
TAR362G0463 Trochodendron aralioides HOM05D000001 ORTHO05D009286 4.3e-08 62.0 52 59.6
Ciclev10002196m.g Citrus clementina HOM05D000001 ORTHO05D009286 5.6e-08 61.6 52 55.8
Cc02_g33430 Coffea canephora HOM05D000001 ORTHO05D009286 5.6e-08 61.6 58 53.4
Dinv40288 Davidia involucrata HOM05D000001 ORTHO05D009286 5.6e-08 61.6 52 55.8
BraSC132t45509Z Brassica rapa HOM05D000001 ORTHO05D009286 7.4e-08 61.2 68 44.1
MELO3C004256.2 Cucumis melo HOM05D000001 ORTHO05D009286 7.4e-08 61.2 62 50.0
Aa31LG5G15650 Aethionema arabicum HOM05D000001 ORTHO05D009286 9.6e-08 60.8 61 47.5
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 9.6e-08 60.8 62 46.8
MSTRG.16965 Avicennia marina HOM05D000001 ORTHO05D009286 9.6e-08 60.8 52 51.9
A05p32000 Brassica napus HOM05D000001 ORTHO05D009286 9.6e-08 60.8 68 44.1
BraA05t22031Z Brassica rapa HOM05D000001 ORTHO05D009286 9.6e-08 60.8 68 44.1
CARHR079690 Cardamine hirsuta HOM05D000001 ORTHO05D009286 9.6e-08 60.8 62 45.2
PSO170G4485 Papaver somniferum HOM05D000001 ORTHO05D009286 9.6e-08 60.8 58 51.7
Potri.013G021000 Populus trichocarpa HOM05D000001 ORTHO05D009286 9.6e-08 60.8 59 50.8
Atru.chr2.405 Acer truncatum HOM05D000001 ORTHO05D009286 1.3e-07 60.5 50 52.0
Ca_09356_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009286 1.3e-07 60.5 67 52.2
Gohir.A11G265100 Gossypium hirsutum HOM05D000001 ORTHO05D009286 1.3e-07 60.5 71 49.3
Gohir.D11G275300 Gossypium hirsutum HOM05D000001 ORTHO05D009286 1.3e-07 60.5 51 56.9
Gorai.007G297100 Gossypium raimondii HOM05D000001 ORTHO05D009286 1.3e-07 60.5 51 56.9
Sabra13G0023400 Salix brachista HOM05D000001 ORTHO05D009286 1.6e-07 60.1 61 45.9
BNapus_Darmor_BZH_scaffold_114p00160 Brassica napus HOM05D000001 ORTHO05D009286 2.1e-07 59.7 62 45.2
Cfa006590 Carpinus fangiana HOM05D000001 ORTHO05D009582 2.1e-07 59.7 52 55.8
FAN06G3148 Fragaria x ananassa HOM05D000001 ORTHO05D009286 2.1e-07 59.7 90 42.2
PSO302G0274 Papaver somniferum HOM05D000001 ORTHO05D009286 2.1e-07 59.7 58 50.0
Cpa.g.sc48.55 Carica papaya HOM05D000001 ORTHO05D009286 2.8e-07 59.3 67 49.3
RcHm_v2.0_Chr3g0454761 Rosa chinensis HOM05D000001 ORTHO05D009286 2.8e-07 59.3 52 55.8
CsaV3_2G005310 Cucumis sativus L. HOM05D000001 ORTHO05D009286 3.7e-07 58.9 53 52.8
Psat3g010960 Pisum sativum HOM05D000001 ORTHO05D009286 3.7e-07 58.9 61 47.5
Sed0027835 Sechium edule HOM05D000001 ORTHO05D009286 3.7e-07 58.9 53 52.8
DCAR_024833 Daucus carota HOM05D000001 ORTHO05D009286 4.8e-07 58.5 52 53.8
FvH4_7g03590 Fragaria vesca HOM05D000001 ORTHO05D009286 4.8e-07 58.5 52 55.8
Thecc.05G303100 Theobroma cacao HOM05D000001 ORTHO05D009286 4.8e-07 58.5 57 50.9
GSVIVG01000053001 Vitis vinifera HOM05D000001 ORTHO05D009286 6.2e-07 58.2 52 55.8
ClCG02G015790 Citrullus lanatus HOM05D000001 ORTHO05D009286 8.1e-07 57.8 53 50.9
Haze_04195 Corylus avellana HOM05D000001 ORTHO05D009582 8.1e-07 57.8 52 53.8
FAN03G0753 Fragaria x ananassa HOM05D000001 ORTHO05D009286 8.1e-07 57.8 54 53.7
TPR.G33241 Trifolium pratense HOM05D000001 ORTHO05D009286 8.1e-07 57.8 59 49.2
Phvul.006G091900 Phaseolus vulgaris HOM05D000001 ORTHO05D009286 1.1e-06 57.4 59 52.5
VMungo0540G1561 Vigna mungo HOM05D000001 ORTHO05D009286 1.1e-06 57.4 59 52.5
ECA240G0839 Erigeron canadensis HOM05D000001 ORTHO05D009286 1.4e-06 57.0 58 44.8
Manes.09G167201 Manihot esculenta HOM05D000001 ORTHO05D009286 1.4e-06 57.0 67 40.3
Peaxi162Scf00037g00631 Petunia axillaris HOM05D000001 ORTHO05D009286 1.4e-06 57.0 60 45.0
TWI12G0446 Tripterygium wilfordii HOM05D000001 ORTHO05D009286 1.4e-06 57.0 52 53.8
CSS0009057 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009286 1.8e-06 56.6 53 52.8
CAN.G1034.26 Capsicum annuum HOM05D000001 ORTHO05D009286 2.4e-06 56.2 62 43.5
COL.COLO4_13469 Corchorus olitorius HOM05D000001 ORTHO05D009286 3.1e-06 55.8 49 53.1
Pp3c27_1510 Physcomitrium patens HOM05D000001 ORTHO05D009286 3.1e-06 55.8 56 50.0
unitig_747.g21349 Utricularia gibba HOM05D000001 ORTHO05D009286 3.1e-06 55.8 52 50.0
CANSAT78G0322 Cannabis sativa HOM05D000001 ORTHO05D009286 4.0e-06 55.5 69 40.6
CANSAT78G1766 Cannabis sativa HOM05D000001 ORTHO05D009286 4.0e-06 55.5 69 40.6
Lj1g0025628 Lotus japonicus HOM05D000001 ORTHO05D009286 4.0e-06 55.5 63 44.4
Mapoly0074s0078 Marchantia polymorpha HOM05D000001 ORTHO05D009286 4.0e-06 55.5 57 47.4
PGSC0003DMG400024697 Solanum tuberosum HOM05D000001 ORTHO05D009286 4.0e-06 55.5 60 45.0
arahy.Tifrunner.gnm1.ann1.N2G7N8 Arachis hypogaea HOM05D000001 ORTHO05D009286 5.3e-06 55.1 57 52.6
Medtr7g113530 Medicago truncatula HOM05D000001 ORTHO05D009286 5.3e-06 55.1 61 44.3
Nitab4.5_0000137g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009286 5.3e-06 55.1 60 45.0
Prupe.6G325800 Prunus persica HOM05D000001 ORTHO05D009286 5.3e-06 55.1 52 51.9
Lalb_Chr18g0045641 Lupinus albus HOM05D000001 ORTHO05D009286 6.9e-06 54.7 58 44.8
SalBow8G4411 Salvia bowleyana HOM05D000001 ORTHO05D009286 6.9e-06 54.7 56 48.2
Duzib177G1137 Durio zibethinus HOM05D000001 ORTHO05D009582 9.0e-06 54.3 52 51.9
RhsimUnG0226000 Rhododendron simsii HOM05D000001 ORTHO05D009286 9.0e-06 54.3 57 49.1


User provided reference genes

Program Settings