Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0392050 Oryza sativa ssp. japonica HOM05D003550 ORTHO05D004336 1.3e-179 633.3 394 100.0
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 7.2e-106 388.3 257 78.2
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 9.4e-106 387.9 257 78.2
TAR623G1672 Trochodendron aralioides HOM05D003550 ORTHO05D004336 5.0e-59 232.6 264 53.8
HPP92_001023 Vanilla planifolia HOM05D003550 ORTHO05D004336 1.5e-58 231.1 280 47.9
HPP92_003596 Vanilla planifolia HOM05D003550 ORTHO05D004336 1.9e-58 230.7 280 53.9
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 1.1e-56 224.9 260 53.5
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 3.1e-56 223.4 267 50.6
Prupe.2G040800 Prunus persica HOM05D003550 ORTHO05D004336 4.0e-56 223.0 259 50.6
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 6.8e-56 222.2 262 53.4
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 1.5e-55 221.1 258 53.5
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 2.0e-55 220.7 259 49.4
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 2.6e-55 220.3 259 49.4
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 2.6e-55 220.3 258 46.9
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 2.6e-55 220.3 258 51.9
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 3.4e-55 219.9 260 52.7
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 4.4e-55 219.5 263 49.0
Potri.001G029600 Populus trichocarpa HOM05D003550 ORTHO05D004336 5.8e-55 219.2 257 47.1
Dinv32016 Davidia involucrata HOM05D003550 ORTHO05D004336 7.5e-55 218.8 258 54.3
TWI15G0170 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 1.3e-54 218.0 265 47.9
FAN03G0411 Fragaria x ananassa HOM05D003550 ORTHO05D004336 2.9e-54 216.9 264 51.5
FAN10G1007 Fragaria x ananassa HOM05D003550 ORTHO05D004336 2.9e-54 216.9 265 51.3
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 2.9e-54 216.9 269 50.6
FAN01G2608 Fragaria x ananassa HOM05D003550 ORTHO05D004336 3.7e-54 216.5 265 51.3
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 3.7e-54 216.5 257 47.9
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 4.9e-54 216.1 259 47.5
AUR62044058 Chenopodium quinoa HOM05D003550 ORTHO05D004336 4.9e-54 216.1 258 51.6
Dinv44694 Davidia involucrata HOM05D003550 ORTHO05D004336 8.3e-54 215.3 258 53.5
MD02G1282000 Malus domestica HOM05D003550 ORTHO05D004336 8.3e-54 215.3 259 52.5
Duzib114G0877 Durio zibethinus HOM05D003550 ORTHO05D004336 1.1e-53 214.9 277 48.4
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 1.1e-53 214.9 265 51.3
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 1.1e-53 214.9 265 51.3
Gohir.A05G399700 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.1e-53 214.9 278 47.8
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 1.4e-53 214.5 258 48.1
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 1.4e-53 214.5 260 43.8
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 1.4e-53 214.5 260 43.8
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.9e-53 214.2 278 47.8
Gorai.012G018700 Gossypium raimondii HOM05D003550 ORTHO05D004336 1.9e-53 214.2 278 47.8
Sabra01G0021200 Salix brachista HOM05D003550 ORTHO05D004336 2.4e-53 213.8 255 48.2
arahy.Tifrunner.gnm1.ann1.VF4M4N Arachis hypogaea HOM05D003550 ORTHO05D004336 3.2e-53 213.4 263 51.0
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 3.2e-53 213.4 258 47.7
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 5.4e-53 212.6 261 51.7
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 5.4e-53 212.6 268 50.7
GSVIVG01036651001 Vitis vinifera HOM05D003550 ORTHO05D004336 5.4e-53 212.6 258 50.0
Aa31LG11G7760 Aethionema arabicum HOM05D003550 ORTHO05D004336 7.1e-53 212.2 257 50.2
Cpa.g.sc847.2 Carica papaya HOM05D003550 ORTHO05D004336 7.1e-53 212.2 264 50.0
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 7.1e-53 212.2 262 51.9
Manes.04G157700 Manihot esculenta HOM05D003550 ORTHO05D004336 9.2e-53 211.8 257 52.5
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 1.2e-52 211.5 262 48.9
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 2.1e-52 210.7 266 51.1
Cfa010939 Carpinus fangiana HOM05D003550 ORTHO05D004336 2.1e-52 210.7 262 51.9
CDE09G1076 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 2.1e-52 210.7 260 50.4
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 2.7e-52 210.3 258 46.9
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 2.7e-52 210.3 274 48.9
SMO271G0056 Selaginella moellendorffii HOM05D003550 ORTHO05D004336 3.5e-52 209.9 257 51.4
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 3.5e-52 209.9 260 52.3
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 6.0e-52 209.1 256 52.3
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 6.0e-52 209.1 274 48.5
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 6.0e-52 209.1 276 47.5
Glyma.11G157400 Glycine max HOM05D003550 ORTHO05D004336 7.8e-52 208.8 263 51.0
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 7.8e-52 208.8 258 51.2
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.3e-51 207.2 274 48.5
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 2.3e-51 207.2 269 52.0
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 3.0e-51 206.8 258 46.1
Sc10g0004490 Simmondsia chinensis HOM05D003550 ORTHO05D004336 3.0e-51 206.8 271 45.8
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 3.9e-51 206.5 258 46.1
Sed0009251 Sechium edule HOM05D003550 ORTHO05D004336 6.6e-51 205.7 257 44.7
Aqoxy1G00373 Aquilegia oxysepala HOM05D003550 ORTHO05D004336 1.1e-50 204.9 273 48.4
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 1.1e-50 204.9 258 48.1
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 1.5e-50 204.5 275 46.9
CDE02G3571 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 1.5e-50 204.5 257 49.8
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 1.5e-50 204.5 260 49.6
SHI04015 Sapria himalayana HOM05D003550 ORTHO05D000023 1.5e-50 204.5 282 41.8
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 1.9e-50 204.1 268 49.6
THA.LOC104819140 Tarenaya hassleriana HOM05D003550 ORTHO05D004336 1.9e-50 204.1 264 47.7
Rhsim07G0068000 Rhododendron simsii HOM05D003550 ORTHO05D004336 3.3e-50 203.4 260 47.7
CSS0018240 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 4.3e-50 203.0 271 49.1
CSS0021926 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 4.3e-50 203.0 271 49.1
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 4.3e-50 203.0 262 44.3
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 5.6e-50 202.6 266 47.4
Lalb_Chr04g0264171 Lupinus albus HOM05D003550 ORTHO05D004336 5.6e-50 202.6 257 49.0
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 5.6e-50 202.6 258 51.9
Medtr0137s0080 Medicago truncatula HOM05D003550 ORTHO05D004336 7.3e-50 202.2 269 51.7
unitig_0.g2291 Utricularia gibba HOM05D003550 ORTHO05D004336 9.5e-50 201.8 262 43.9
Mapoly0002s0111 Marchantia polymorpha HOM05D003550 ORTHO05D004336 2.8e-49 200.3 264 45.1
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 4.7e-49 199.5 262 47.7
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 1.1e-48 198.4 260 49.2
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.4e-48 198.0 257 49.0
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 1.2e-47 194.9 282 41.8
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 1.2e-47 194.9 263 49.0
CSS0027876 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 3.4e-47 193.4 265 47.2
Glyma.04G134700 Glycine max HOM05D003550 ORTHO05D004336 3.4e-47 193.4 268 48.5
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 4.4e-47 193.0 257 48.2
Duzib106G1351 Durio zibethinus HOM05D003550 ORTHO05D004336 7.6e-47 192.2 267 49.1
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 1.3e-46 191.4 254 50.0
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 1.7e-46 191.0 276 42.4
HanXRQChr04g0112901 Helianthus annuus HOM05D003550 ORTHO05D004336 3.8e-46 189.9 259 50.6
SEGI_17265 Sequoiadendron giganteum HOM05D003550 ORTHO05D004336 6.4e-46 189.1 266 41.0
Migut.N01852 Erythranthe guttata HOM05D003550 ORTHO05D004336 8.4e-46 188.7 271 46.5
vmacro04042 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 1.9e-45 187.6 270 41.1
MSTRG.5071 Avicennia marina HOM05D003550 ORTHO05D004336 2.4e-45 187.2 277 41.9
Glyma.13G195200 Glycine max HOM05D003550 ORTHO05D004336 1.7e-43 181.0 264 50.4
MSTRG.28033 Avicennia marina HOM05D003550 ORTHO05D004336 3.0e-43 180.3 280 43.9
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 3.0e-43 180.3 303 42.2
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 1.5e-42 177.9 255 44.3
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 4.3e-42 176.4 303 42.2
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 2.8e-41 173.7 287 39.0
ATR0782G192 Amborella trichopoda HOM05D003550 ORTHO05D004336 1.4e-40 171.4 243 46.1
Cc00_g09560 Coffea canephora HOM05D003550 ORTHO05D004336 1.4e-40 171.4 267 45.7
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 1.8e-40 171.0 285 42.5
CiPaw.14G112000 Carya illinoinensis HOM05D003550 ORTHO05D004336 1.5e-39 167.9 270 39.6
Cfa009883 Carpinus fangiana HOM05D003550 ORTHO05D004336 3.4e-39 166.8 264 44.3
HanXRQChr15g0481051 Helianthus annuus HOM05D003550 ORTHO05D004336 3.4e-39 166.8 260 40.4
Rhsim13G0208400 Rhododendron simsii HOM05D003550 ORTHO05D004336 3.4e-39 166.8 260 41.2
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 4.4e-39 166.4 256 39.8
ClCG02G022810 Citrullus lanatus HOM05D003550 ORTHO05D004336 1.3e-38 164.9 258 40.3
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 2.9e-38 163.7 256 39.5
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 2.9e-38 163.7 256 41.0
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 4.9e-38 162.9 268 43.7
Haze_23247 Corylus avellana HOM05D003550 ORTHO05D004336 1.1e-37 161.8 264 43.6
Lj9A657G27 Lonicera japonica HOM05D003550 ORTHO05D004336 7.8e-36 155.6 244 42.2
BcaB01g05352 Brassica carinata HOM05D003550 ORTHO05D004336 2.3e-35 154.1 260 42.7
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 3.6e-33 146.7 234 40.2
AUR62032634 Chenopodium quinoa HOM05D003550 ORTHO05D004336 6.9e-32 142.5 222 43.7
BolC2t06570H Brassica oleracea HOM05D003550 ORTHO05D004336 5.8e-31 139.4 254 33.1
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 4.9e-30 136.3 267 36.7
Potri.001G274900 Populus trichocarpa HOM05D003550 ORTHO05D004336 1.1e-29 135.2 264 37.5
ECA236G1978 Erigeron canadensis HOM05D003550 ORTHO05D004336 5.4e-29 132.9 213 44.6
AUR62026885 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.3e-27 127.5 236 40.3
TPR.G1404 Trifolium pratense HOM05D003550 ORTHO05D004336 3.5e-20 103.6 88 56.8
ATR0719G001 Amborella trichopoda HOM05D003550 ORTHO05D004336 4.3e-18 96.7 74 56.8
ATR0721G162 Amborella trichopoda HOM05D003550 ORTHO05D004336 4.9e-14 83.2 74 51.4
CSS0028124 Camellia sinensis var. sinensis HOM05D031701 ORTHO05D004336 2.4e-08 64.3 76 40.8
Gohir.D05G057600 Gossypium hirsutum HOM05D002526 ORTHO05D004039 5.3e-08 63.2 124 34.7
Actinidia06972 Actinidia chinensis HOM05D003550 ORTHO05D004336 2.6e-07 60.8 49 59.2
Gorai.009G058700 Gossypium raimondii HOM05D002526 ORTHO05D004039 4.5e-07 60.1 124 33.9
Aqoxy5G04051 Aquilegia oxysepala HOM05D002526 ORTHO05D004039 1.7e-06 58.2 124 33.9
Potri.006G255700 Populus trichocarpa HOM05D002526 ORTHO05D004039 3.8e-06 57.0 124 34.7
CBR_g21745 Chara braunii HOM05D003550 ORTHO05D004336 8.5e-06 55.8 259 27.0


User provided reference genes

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