Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0388400 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004900 4.6e-152 541.2 272 100.0
Zm00001eb140570 Zea mays HOM05D001245 ORTHO05D004900 1.0e-82 310.8 230 69.6
Os01g0957000 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004900 2.9e-82 309.3 218 72.0
Zm00001eb362660 Zea mays HOM05D001245 ORTHO05D004900 9.4e-81 304.3 220 70.0
Nn2g15212 Nelumbo nucifera HOM05D001245 ORTHO05D004900 2.5e-57 226.5 212 57.1
TAR623G0953 Trochodendron aralioides HOM05D001245 ORTHO05D004900 8.0e-56 221.5 213 54.5
TAR633G0303 Trochodendron aralioides HOM05D001245 ORTHO05D004900 5.2e-55 218.8 236 53.8
FvH4_3g28510 Fragaria vesca HOM05D001245 ORTHO05D004900 8.9e-55 218.0 210 56.7
FAN21G1833 Fragaria x ananassa HOM05D001245 ORTHO05D004900 2.6e-54 216.5 210 56.2
FAN25G0433 Fragaria x ananassa HOM05D001245 ORTHO05D004900 2.6e-54 216.5 210 56.2
FAN11G1174 Fragaria x ananassa HOM05D001245 ORTHO05D004900 5.8e-54 215.3 210 56.2
FAN16G0752 Fragaria x ananassa HOM05D001245 ORTHO05D004900 7.5e-54 214.9 210 55.7
Prupe.4G254100 Prunus persica HOM05D001245 ORTHO05D004900 9.8e-54 214.5 217 54.8
PSO384G2906 Papaver somniferum HOM05D001245 ORTHO05D004900 2.2e-53 213.4 240 50.0
MD03G1172500 Malus domestica HOM05D001245 ORTHO05D004900 8.3e-53 211.5 210 55.2
PSO339G0578 Papaver somniferum HOM05D001245 ORTHO05D004900 1.9e-52 210.3 240 49.2
RcHm_v2.0_Chr5g0052801 Rosa chinensis HOM05D001245 ORTHO05D004900 1.9e-52 210.3 213 55.9
PGR119G2403 Punica granatum HOM05D001245 ORTHO05D004900 3.2e-52 209.5 211 55.0
MBI17_g18830_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004900 4.1e-52 209.1 210 54.8
Gohir.A05G069800 Gossypium hirsutum HOM05D001245 ORTHO05D004900 2.7e-51 206.5 212 52.8
Aqoxy2G00231 Aquilegia oxysepala HOM05D001245 ORTHO05D004900 4.6e-51 205.7 213 54.5
Gohir.D05G072700 Gossypium hirsutum HOM05D001245 ORTHO05D004900 6.0e-51 205.3 212 52.4
Gorai.009G073700 Gossypium raimondii HOM05D001245 ORTHO05D004900 6.0e-51 205.3 212 52.4
Dinv22163 Davidia involucrata HOM05D001245 ORTHO05D004900 1.3e-50 204.1 208 53.4
TWI32G0811 Tripterygium wilfordii HOM05D001245 ORTHO05D004900 1.3e-50 204.1 214 53.7
Sed0004060 Sechium edule HOM05D001245 ORTHO05D004900 1.7e-50 203.8 238 48.7
TWI60G0980 Tripterygium wilfordii HOM05D001245 ORTHO05D004900 1.7e-50 203.8 218 52.3
ATR0730G209 Amborella trichopoda HOM05D001245 ORTHO05D004900 6.6e-50 201.8 211 50.7
QL01p004208 Quercus lobata HOM05D001245 ORTHO05D004900 1.1e-49 201.1 234 50.0
Thecc.09G237500 Theobroma cacao HOM05D001245 ORTHO05D004900 1.1e-49 201.1 238 50.0
Peaxi162Scf00032g00821 Petunia axillaris HOM05D001245 ORTHO05D004900 1.5e-49 200.7 239 48.5
CANSAT54G0430 Cannabis sativa HOM05D001245 ORTHO05D004900 2.5e-49 199.9 213 53.5
Eucgr.J00748 Eucalyptus grandis HOM05D001245 ORTHO05D004900 2.5e-49 199.9 231 49.8
Potri.009G051500 Populus trichocarpa HOM05D001245 ORTHO05D004900 5.6e-49 198.7 230 48.3
ClCG03G013120 Citrullus lanatus HOM05D001245 ORTHO05D004900 9.5e-49 198.0 231 48.1
Psat7g172200 Pisum sativum HOM05D001245 ORTHO05D004900 1.6e-48 197.2 212 51.4
Potri.001G256100 Populus trichocarpa HOM05D001245 ORTHO05D004900 1.6e-48 197.2 230 48.7
MELO3C015180.2 Cucumis melo HOM05D001245 ORTHO05D004900 2.1e-48 196.8 208 51.9
Cc01_g04860 Coffea canephora HOM05D001245 ORTHO05D004900 3.6e-48 196.1 211 51.2
CsaV3_1G042920 Cucumis sativus L. HOM05D001245 ORTHO05D004900 3.6e-48 196.1 208 51.9
Manes.14G003900 Manihot esculenta HOM05D001245 ORTHO05D004900 3.6e-48 196.1 210 51.9
SGA_v2.0_scaffold1G00741 Striga asiatica HOM05D001245 ORTHO05D004900 3.6e-48 196.1 229 49.8
SGA_v2.0_scaffold29G12323 Striga asiatica HOM05D001245 ORTHO05D004900 4.7e-48 195.7 229 49.8
TPR.G13758 Trifolium pratense HOM05D001245 ORTHO05D004900 6.2e-48 195.3 243 48.6
CAN.G821.1 Capsicum annuum HOM05D001245 ORTHO05D004900 8.1e-48 194.9 213 50.7
HanXRQChr11g0343641 Helianthus annuus HOM05D001245 ORTHO05D004900 8.1e-48 194.9 209 52.6
Solyc01g008560.3 Solanum lycopersicum HOM05D001245 ORTHO05D004900 8.1e-48 194.9 209 50.7
Actinidia06921 Actinidia chinensis HOM05D001245 ORTHO05D004900 1.1e-47 194.5 239 49.0
CSS0024429 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004900 1.1e-47 194.5 235 50.2
HanXRQChr14g0432931 Helianthus annuus HOM05D001245 ORTHO05D004900 1.1e-47 194.5 188 56.4
Medtr4g076990 Medicago truncatula HOM05D001245 ORTHO05D004900 1.1e-47 194.5 210 53.8
Sopen01g004100 Solanum pennellii HOM05D001245 ORTHO05D004900 1.1e-47 194.5 209 50.7
ECA248G2887 Erigeron canadensis HOM05D001245 ORTHO05D004900 1.8e-47 193.7 212 50.9
Nitab4.5_0001747g0010 Nicotiana tabacum HOM05D001245 ORTHO05D004900 2.3e-47 193.4 210 51.4
PGSC0003DMG400010485 Solanum tuberosum HOM05D001245 ORTHO05D004900 3.1e-47 193.0 208 50.0
Duzib170G0912 Durio zibethinus HOM05D001245 ORTHO05D004900 6.8e-47 191.8 216 50.0
Migut.D00621 Erythranthe guttata HOM05D001245 ORTHO05D004900 6.8e-47 191.8 209 49.3
Manes.06G162500 Manihot esculenta HOM05D001245 ORTHO05D004900 6.8e-47 191.8 231 47.6
Hund07492 Selenicereus undatus HOM05D001245 ORTHO05D004900 6.8e-47 191.8 229 51.1
Hund22008 Selenicereus undatus HOM05D001245 ORTHO05D004900 8.9e-47 191.4 208 52.9
Atru.chr3.2671_Atru.chr3.2672 Acer truncatum HOM05D001245 ORTHO05D004900 1.2e-46 191.0 213 50.7
arahy.Tifrunner.gnm1.ann1.9YG71W Arachis hypogaea HOM05D001245 ORTHO05D004900 2.0e-46 190.3 219 51.6
arahy.Tifrunner.gnm1.ann1.J55WMV Arachis hypogaea HOM05D001245 ORTHO05D004900 2.0e-46 190.3 211 51.2
Sabra16G0156300 Salix brachista HOM05D001245 ORTHO05D004900 2.6e-46 189.9 244 46.3
Lj2C626G1 Lonicera japonica HOM05D001245 ORTHO05D004900 4.4e-46 189.1 254 44.1
Sc16g0011310 Simmondsia chinensis HOM05D001245 ORTHO05D004900 5.8e-46 188.7 197 51.8
Phvul.011G022700 Phaseolus vulgaris HOM05D001245 ORTHO05D004900 7.5e-46 188.3 212 50.5
vmacro04136 Vaccinium macrocarpon HOM05D001245 ORTHO05D004900 9.8e-46 188.0 286 42.3
Lalb_Chr19g0139801 Lupinus albus HOM05D001245 ORTHO05D004900 1.3e-45 187.6 230 48.7
Sc06g0004620 Simmondsia chinensis HOM05D001245 ORTHO05D004900 1.3e-45 187.6 230 47.0
Haze_23162 Corylus avellana HOM05D001245 ORTHO05D004900 1.7e-45 187.2 217 51.2
Ca_18972_v3 Cicer arietinum L. HOM05D001245 ORTHO05D004900 2.2e-45 186.8 214 50.0
VMungo1127G1052 Vigna mungo HOM05D001245 ORTHO05D004900 3.7e-45 186.0 211 50.2
Lj3g0006919 Lotus japonicus HOM05D001245 ORTHO05D004900 4.9e-45 185.7 246 45.9
MSTRG.21365 Avicennia marina HOM05D001245 ORTHO05D004900 6.4e-45 185.3 213 49.8
Glyma.12G020100 Glycine max HOM05D001245 ORTHO05D004900 6.4e-45 185.3 200 51.5
Cfa009791 Carpinus fangiana HOM05D001245 ORTHO05D004900 1.1e-44 184.5 211 50.7
Sabra09G0037600 Salix brachista HOM05D001245 ORTHO05D004900 1.4e-44 184.1 282 40.1
AT3G21070 Arabidopsis thaliana HOM05D001245 ORTHO05D004900 1.9e-44 183.7 214 51.4
AL3G35020 Arabidopsis lyrata HOM05D001245 ORTHO05D004900 2.4e-44 183.3 214 50.0
Glyma.11G093600 Glycine max HOM05D001245 ORTHO05D004900 5.4e-44 182.2 238 45.4
THA.LOC104817912 Tarenaya hassleriana HOM05D001245 ORTHO05D004900 5.4e-44 182.2 268 45.1
Gohir.A09G113000 Gossypium hirsutum HOM05D001245 ORTHO05D004900 7.1e-44 181.8 265 41.9
CARHR096910 Cardamine hirsuta HOM05D001245 ORTHO05D004900 9.2e-44 181.4 200 53.5
HanXRQChr01g0023921 Helianthus annuus HOM05D001245 ORTHO05D004900 9.2e-44 181.4 213 50.2
Gorai.006G127100 Gossypium raimondii HOM05D001245 ORTHO05D004900 1.2e-43 181.0 265 41.9
Lsat_1_v5_gn_1_77681 Lactuca sativa HOM05D001245 ORTHO05D004900 1.6e-43 180.6 208 49.5
Aa31LG8G7790 Aethionema arabicum HOM05D001245 ORTHO05D004900 2.1e-43 180.3 209 50.7
MD11G1190400 Malus domestica HOM05D001245 ORTHO05D004900 2.7e-43 179.9 209 49.8
BcaB06g26174 Brassica carinata HOM05D001245 ORTHO05D004900 4.6e-43 179.1 216 48.6
Thhalv10020469m.g Eutrema salsugineum HOM05D001245 ORTHO05D004900 1.0e-42 177.9 223 48.4
Carub.0003s2097 Capsella rubella HOM05D001245 ORTHO05D004900 1.3e-42 177.6 210 49.0
BcaB04g20614 Brassica carinata HOM05D001245 ORTHO05D004900 5.1e-42 175.6 218 47.2
GSVIVG01025236001 Vitis vinifera HOM05D001245 ORTHO05D004900 5.1e-42 175.6 268 40.3
BcaC05g28218 Brassica carinata HOM05D001245 ORTHO05D004900 6.6e-42 175.3 218 48.2
C05p43020 Brassica napus HOM05D001245 ORTHO05D004900 6.6e-42 175.3 218 48.2
BolC5t33033H Brassica oleracea HOM05D001245 ORTHO05D004900 6.6e-42 175.3 218 48.2
CiPaw.14G117400 Carya illinoinensis HOM05D001245 ORTHO05D004900 6.6e-42 175.3 233 45.9
Duzib168G0839 Durio zibethinus HOM05D001245 ORTHO05D004900 6.6e-42 175.3 259 42.1
C01p43200 Brassica napus HOM05D001245 ORTHO05D004900 1.9e-41 173.7 223 46.6
BcaC09g49046 Brassica carinata HOM05D001245 ORTHO05D004900 2.5e-41 173.3 223 46.6
BolC1t04266H Brassica oleracea HOM05D001245 ORTHO05D004900 2.5e-41 173.3 223 46.6
AUR62019326 Chenopodium quinoa HOM05D001245 ORTHO05D004900 3.3e-41 172.9 208 48.1
A01p33780 Brassica napus HOM05D001245 ORTHO05D004900 4.3e-41 172.6 223 46.6
DCAR_002082 Daucus carota HOM05D001245 ORTHO05D004900 4.3e-41 172.6 256 42.2
BraA01t03489Z Brassica rapa HOM05D001245 ORTHO05D004900 5.6e-41 172.2 211 46.9
BraA05t21658Z Brassica rapa HOM05D001245 ORTHO05D004900 7.3e-41 171.8 218 47.7
AUR62000145 Chenopodium quinoa HOM05D001245 ORTHO05D004900 9.5e-41 171.4 208 47.1
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.2e-40 171.0 223 46.2
A03p42010 Brassica napus HOM05D001245 ORTHO05D004900 1.2e-40 171.0 228 46.5
BolC3t17428H Brassica oleracea HOM05D001245 ORTHO05D004900 1.2e-40 171.0 223 46.2
BraA03t13355Z Brassica rapa HOM05D001245 ORTHO05D004900 1.2e-40 171.0 228 46.5
Mapoly0052s0071 Marchantia polymorpha HOM05D001245 ORTHO05D004900 1.6e-40 170.6 230 40.0
BcaB04g19134 Brassica carinata HOM05D001245 ORTHO05D004900 2.8e-40 169.9 214 47.7
A05p27650 Brassica napus HOM05D001245 ORTHO05D004900 3.6e-40 169.5 214 48.1
Migut.N02339 Erythranthe guttata HOM05D001245 ORTHO05D004900 3.6e-40 169.5 229 44.1
Sp3g19030 Schrenkiella parvula HOM05D001245 ORTHO05D004900 1.1e-39 167.9 214 47.2
SHI29795 Sapria himalayana HOM05D001245 ORTHO05D004900 2.3e-39 166.8 209 48.3
C03p51430 Brassica napus HOM05D001245 ORTHO05D004900 4.0e-39 166.0 224 45.1
Ciclev10014881m.g Citrus clementina HOM05D001245 ORTHO05D004900 1.9e-36 157.1 228 43.4
Pp3c25_12850 Physcomitrium patens HOM05D001245 ORTHO05D004900 1.9e-36 157.1 251 40.2
COL.COLO4_05366 Corchorus olitorius HOM05D001245 ORTHO05D004900 3.2e-36 156.4 193 47.7
Gohir.D09G109500 Gossypium hirsutum HOM05D001245 ORTHO05D004900 5.4e-36 155.6 263 38.4
Lalb_Chr03g0024471 Lupinus albus HOM05D001245 ORTHO05D004900 5.4e-36 155.6 211 43.6
Pp3c6_3660 Physcomitrium patens HOM05D001245 ORTHO05D004900 7.1e-36 155.2 229 41.9
MSTRG.12463 Avicennia marina HOM05D001245 ORTHO05D004900 5.1e-34 149.1 211 42.7
CiPaw.13G156400 Carya illinoinensis HOM05D001245 ORTHO05D004900 1.1e-33 147.9 217 41.9
DCAR_024415 Daucus carota HOM05D001245 ORTHO05D004900 9.6e-33 144.8 209 44.0
Actinidia16343 Actinidia chinensis HOM05D001245 ORTHO05D004900 1.2e-32 144.4 234 40.2
Nitab4.5_0009763g0010 Nicotiana tabacum HOM05D001245 ORTHO05D004900 1.2e-32 144.4 177 47.5
CiPaw.13G157600 Carya illinoinensis HOM05D001245 ORTHO05D004900 2.8e-32 143.3 216 41.2
Lsat_1_v5_gn_2_30041 Lactuca sativa HOM05D001245 ORTHO05D004900 3.6e-32 142.9 203 43.8
CiPaw.13G157300 Carya illinoinensis HOM05D001245 ORTHO05D004900 8.1e-32 141.7 218 42.2
EL10Ac4g10216 Beta vulgaris HOM05D001245 ORTHO05D004900 1.4e-31 141.0 255 39.2
Ah.06g193940 Amaranthus hybridus HOM05D001245 ORTHO05D004900 8.9e-31 138.3 218 40.8
CDE06G0041 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 5.8e-30 135.6 105 60.0
Dinv36238 Davidia involucrata HOM05D001245 ORTHO05D004900 3.0e-26 123.2 86 66.3
CiPaw.13G156900 Carya illinoinensis HOM05D001245 ORTHO05D004900 1.8e-23 114.0 104 52.9
HPP92_001383 Vanilla planifolia HOM05D001245 ORTHO05D004900 2.0e-22 110.5 66 74.2
CiPaw.13G155300 Carya illinoinensis HOM05D001245 ORTHO05D004900 7.6e-22 108.6 97 52.6
AagrBONN_evm.TU.Sc2ySwM_228.214 Anthoceros agrestis HOM05D001245 ORTHO05D004900 4.9e-21 105.9 104 49.0
unitig_0.g294 Utricularia gibba HOM05D001245 ORTHO05D004900 3.2e-20 103.2 74 66.2
SEGI_17828 Sequoiadendron giganteum HOM05D001245 ORTHO05D004900 4.6e-19 99.4 70 61.4
Pp3c10_23020 Physcomitrium patens HOM05D001245 ORTHO05D004900 5.1e-18 95.9 201 34.3
SMO358G0612 Selaginella moellendorffii HOM05D001245 ORTHO05D004900 4.0e-15 86.3 73 49.3
SEGI_37379 Sequoiadendron giganteum HOM05D001245 ORTHO05D004900 1.5e-14 84.3 144 38.2
Cpa.g.c36006 Carica papaya HOM05D001245 ORTHO05D004900 9.9e-14 81.6 90 47.8
EL10Ac4g10221 Beta vulgaris HOM05D001245 ORTHO05D004900 1.3e-13 81.3 146 40.4
Thhalv10009421m.g Eutrema salsugineum HOM05D001245 ORTHO05D004900 3.8e-13 79.7 135 41.5
Dinv36237 Davidia involucrata HOM05D001245 ORTHO05D004900 6.4e-13 79.0 65 64.6
unitig_0.g293 Utricularia gibba HOM05D001245 ORTHO05D004900 8.4e-13 78.6 75 57.3
Cpa.g.sc84.35 Carica papaya HOM05D001245 ORTHO05D004900 1.1e-12 78.2 64 64.1
CDE06G1045 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 2.4e-12 77.0 56 73.2
CDE02G0159 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 4.2e-12 76.3 64 65.6
SMO364G0052 Selaginella moellendorffii HOM05D001245 ORTHO05D004900 4.2e-12 76.3 67 49.3


User provided reference genes

Program Settings