Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 4.6e-129 464.5 232 100.0
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 5.4e-69 265.0 209 61.2
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 1.2e-68 263.8 216 57.4
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 2.1e-68 263.1 208 60.1
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 2.1e-68 263.1 213 58.7
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 6.0e-68 261.5 209 59.3
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 6.0e-68 261.5 211 58.8
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 1.3e-67 260.4 209 57.9
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 1.3e-67 260.4 212 57.5
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.7e-67 260.0 214 57.0
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 2.3e-67 259.6 209 59.3
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 3.0e-67 259.2 209 59.3
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 3.9e-67 258.8 212 56.6
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 3.9e-67 258.8 212 57.5
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 3.9e-67 258.8 212 57.5
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 8.6e-67 257.7 211 58.3
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 2.5e-66 256.1 210 55.7
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 3.3e-66 255.8 210 57.6
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 4.3e-66 255.4 211 56.9
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 4.3e-66 255.4 212 57.1
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 4.3e-66 255.4 212 57.5
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 5.6e-66 255.0 213 58.7
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 5.6e-66 255.0 211 57.3
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 7.3e-66 254.6 214 54.7
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 9.5e-66 254.2 211 56.9
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 1.2e-65 253.8 211 55.9
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 1.6e-65 253.4 214 53.7
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 2.1e-65 253.1 208 58.2
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 3.6e-65 252.3 210 57.1
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 3.6e-65 252.3 214 55.1
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 3.6e-65 252.3 209 59.3
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 4.7e-65 251.9 210 55.2
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 6.2e-65 251.5 214 54.2
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 8.1e-65 251.1 208 57.7
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 1.4e-64 250.4 210 56.7
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 1.4e-64 250.4 208 57.7
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 1.8e-64 250.0 214 53.7
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 3.1e-64 249.2 210 56.7
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 4.0e-64 248.8 208 55.8
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 5.2e-64 248.4 212 56.6
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 5.2e-64 248.4 212 54.7
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 1.2e-63 247.3 211 54.5
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.2e-63 247.3 209 57.9
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.5e-63 246.9 208 58.2
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 2.6e-63 246.1 216 55.1
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 5.8e-63 245.0 212 54.7
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 5.8e-63 245.0 211 56.4
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 1.3e-62 243.8 212 55.2
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 1.3e-62 243.8 212 53.8
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 4.9e-62 241.9 211 55.9
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 4.9e-62 241.9 201 57.2
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 4.9e-62 241.9 201 57.2
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 8.4e-62 241.1 213 52.6
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 8.4e-62 241.1 195 56.4
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 1.1e-61 240.7 214 52.8
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 1.1e-61 240.7 207 54.6
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 1.9e-61 240.0 213 52.6
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 1.9e-61 240.0 212 51.9
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 4.1e-61 238.8 204 55.4
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 4.1e-61 238.8 218 52.3
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 5.4e-61 238.4 212 52.4
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 5.4e-61 238.4 206 54.9
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 7.1e-61 238.0 211 55.0
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.2e-60 237.3 204 53.4
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 1.2e-60 237.3 203 55.2
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 1.2e-60 237.3 213 53.1
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.6e-60 236.9 208 52.4
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 1.6e-60 236.9 204 56.4
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 2.1e-60 236.5 212 51.9
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 1.0e-59 234.2 209 53.6
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 3.0e-59 232.6 211 53.1
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 8.7e-59 231.1 205 53.7
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 1.1e-58 230.7 221 50.2
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 1.5e-58 230.3 210 54.8
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 1.9e-58 229.9 228 49.6
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 3.3e-58 229.2 227 48.9
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 2.8e-57 226.1 233 47.6
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 3.6e-57 225.7 187 57.2
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 1.4e-56 223.8 202 51.0
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 2.6e-55 219.5 211 48.8
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 3.4e-55 219.2 206 49.0
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 2.2e-54 216.5 197 53.3
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 8.4e-54 214.5 213 51.6
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 1.2e-52 210.7 171 55.0
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 3.5e-52 209.1 194 53.1
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 2.3e-51 206.5 160 58.8
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 8.7e-51 204.5 230 47.4
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 2.8e-49 199.5 197 50.8
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 8.1e-49 198.0 162 58.0
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 1.1e-48 197.6 208 47.6
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 2.6e-47 193.0 163 58.3
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 9.9e-47 191.0 211 47.4
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 7.1e-45 184.9 233 43.8
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 6.0e-44 181.8 164 54.9
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 8.7e-43 177.9 171 50.9
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 8.7e-43 177.9 196 45.9
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 8.1e-41 171.4 167 49.7
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 3.1e-40 169.5 175 47.4
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 2.6e-39 166.4 133 56.4
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 1.4e-37 160.6 163 47.2
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 5.5e-37 158.7 175 44.6
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 3.1e-32 142.9 79 72.2
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.2e-28 131.0 96 60.4
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 2.6e-23 113.2 96 57.3
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 1.4e-21 107.5 97 50.5
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 5.5e-21 105.5 162 39.5
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 5.1e-19 99.0 81 60.5
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 3.7e-17 92.8 87 50.6
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 1.0e-11 74.7 90 42.2


User provided reference genes

Program Settings