Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 7.2e-110 400.6 204 100.0
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 1.1e-81 307.0 172 86.6
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 2.3e-55 219.5 200 55.0
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 3.9e-55 218.8 203 56.2
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 8.7e-55 217.6 204 55.4
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 8.7e-55 217.6 202 57.9
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 1.1e-54 217.2 204 55.4
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 1.5e-54 216.9 199 56.3
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 5.6e-54 214.9 205 55.1
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 5.6e-54 214.9 202 55.9
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 7.4e-54 214.5 202 55.4
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 9.6e-54 214.2 201 53.2
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 9.6e-54 214.2 201 53.2
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 9.6e-54 214.2 201 53.2
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 1.3e-53 213.8 202 55.4
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.3e-53 213.8 205 53.2
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 1.3e-53 213.8 203 51.7
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 1.3e-53 213.8 201 53.2
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 1.3e-53 213.8 201 53.7
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 2.1e-53 213.0 203 55.2
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 2.8e-53 212.6 203 54.7
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 3.7e-53 212.2 203 53.7
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 4.8e-53 211.8 202 55.9
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 6.2e-53 211.5 201 52.7
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 1.1e-52 210.7 202 52.5
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 1.8e-52 209.9 204 55.4
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 2.4e-52 209.5 203 53.7
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 3.1e-52 209.1 202 55.4
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 3.1e-52 209.1 199 53.3
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 4.0e-52 208.8 201 55.2
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 6.9e-52 208.0 203 53.7
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 6.9e-52 208.0 201 53.2
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 6.9e-52 208.0 204 54.4
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 9.0e-52 207.6 202 54.0
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 2.6e-51 206.1 201 52.7
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 3.4e-51 205.7 203 54.2
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 3.4e-51 205.7 208 54.3
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 3.4e-51 205.7 203 53.7
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 4.5e-51 205.3 202 51.5
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 5.8e-51 204.9 202 51.5
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 5.8e-51 204.9 202 54.5
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 5.8e-51 204.9 201 54.2
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 5.8e-51 204.9 202 51.5
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 1.0e-50 204.1 202 54.5
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.0e-50 204.1 203 51.7
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.3e-50 203.8 207 52.2
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 1.7e-50 203.4 211 52.6
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 2.2e-50 203.0 204 52.9
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 2.2e-50 203.0 201 54.2
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 2.9e-50 202.6 226 51.3
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 2.9e-50 202.6 202 52.0
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 4.9e-50 201.8 205 50.2
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 6.5e-50 201.4 202 51.0
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 1.4e-49 200.3 204 51.0
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 1.9e-49 199.9 202 51.0
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 2.5e-49 199.5 201 50.7
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.5e-49 199.5 203 50.2
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.5e-49 199.5 199 50.8
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.5e-49 199.5 204 48.5
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 2.5e-49 199.5 205 51.7
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 9.3e-49 197.6 203 51.7
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 9.3e-49 197.6 204 49.0
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 9.3e-49 197.6 203 51.7
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.2e-48 197.2 188 54.8
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.2e-48 197.2 204 49.0
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.6e-48 196.8 199 50.8
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.6e-48 196.8 193 54.9
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.1e-48 196.4 201 51.2
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.1e-48 196.4 201 51.2
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 2.7e-48 196.1 204 48.0
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 2.7e-48 196.1 219 49.8
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 3.5e-48 195.7 203 49.3
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.5e-48 195.7 202 51.5
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 6.0e-48 194.9 233 45.9
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 1.8e-47 193.4 203 50.2
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 2.3e-47 193.0 202 51.5
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 3.9e-47 192.2 203 48.8
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 1.1e-46 190.7 234 44.4
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 1.5e-46 190.3 203 49.8
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.5e-46 189.5 203 47.8
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 2.5e-46 189.5 203 50.2
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 2.5e-46 189.5 210 49.0
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 3.7e-45 185.7 228 44.3
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 3.7e-45 185.7 201 49.8
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 6.3e-45 184.9 159 56.0
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.4e-44 183.7 222 47.3
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 9.0e-44 181.0 222 46.4
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.4e-43 179.1 203 48.3
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 1.3e-42 177.2 159 54.7
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 3.8e-42 175.6 165 53.3
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 1.5e-38 163.7 133 59.4
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 2.5e-38 162.9 133 59.4
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 1.6e-37 160.2 133 57.1
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 5.3e-36 155.2 202 45.0
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 2.0e-35 153.3 203 42.9
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 2.5e-33 146.4 201 41.8
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 7.2e-33 144.8 204 41.7
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.0e-31 141.0 202 41.1
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 1.0e-26 124.4 231 32.5
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 2.9e-26 122.9 121 53.7
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.8e-26 122.5 191 40.8
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 3.8e-26 122.5 102 57.8
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 5.0e-26 122.1 206 33.0
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 2.5e-25 119.8 133 47.4
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 1.0e-23 114.4 202 36.1
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 7.4e-22 108.2 135 42.2
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 1.7e-21 107.1 205 31.2
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 8.2e-21 104.8 122 48.4
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 8.2e-21 104.8 122 48.4
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.8e-20 103.6 122 46.7
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 4.1e-20 102.4 92 55.4
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 7.0e-20 101.7 75 62.7
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.5e-17 93.2 63 68.3
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 4.7e-16 89.0 84 50.0
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 3.0e-15 86.3 86 48.8
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 2.2e-13 80.1 82 50.0
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.8e-12 77.0 52 67.3
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 1.8e-12 77.0 69 52.2
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 7.0e-12 75.1 108 38.9
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.2e-11 74.3 73 49.3
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 2.0e-06 57.0 66 45.5


User provided reference genes

Program Settings