Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 0.0e+00 1191.0 613 100.0
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 1.9e-206 723.0 625 63.2
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 5.3e-140 502.3 608 46.7
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 6.5e-138 495.4 610 45.2
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 2.7e-136 490.0 668 43.0
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 1.8e-135 487.3 631 45.5
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 1.8e-135 487.3 648 44.1
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 4.4e-134 482.6 657 44.0
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 1.3e-133 481.1 683 42.2
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 2.8e-133 479.9 651 44.1
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 8.2e-133 478.4 662 42.1
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 1.4e-132 477.6 633 44.9
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 2.4e-132 476.9 669 44.1
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 3.1e-132 476.5 623 44.9
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 9.1e-132 474.9 668 43.6
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 2.6e-131 473.4 628 45.5
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 3.5e-131 473.0 634 44.0
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 1.0e-130 471.5 681 42.3
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 1.0e-130 471.5 636 42.8
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 1.3e-130 471.1 642 43.0
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 1.3e-130 471.1 680 43.1
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 1.7e-130 470.7 635 43.8
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 1.7e-130 470.7 609 45.2
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 6.5e-130 468.8 631 42.2
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 6.5e-130 468.8 631 42.5
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 6.5e-130 468.8 650 44.3
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 1.5e-129 467.6 653 42.4
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 2.5e-129 466.8 623 44.3
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 4.2e-129 466.1 632 44.0
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 5.5e-129 465.7 652 42.6
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 1.6e-128 464.2 679 41.4
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 4.7e-128 462.6 598 44.6
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 4.7e-128 462.6 614 42.5
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 8.0e-128 461.8 627 42.4
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 8.0e-128 461.8 610 44.4
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 1.0e-127 461.5 650 41.8
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 1.4e-127 461.1 658 42.1
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 2.3e-127 460.3 628 42.5
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 2.3e-127 460.3 625 44.6
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 5.2e-127 459.1 622 42.4
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 8.8e-127 458.4 692 41.0
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 2.0e-126 457.2 657 41.6
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 9.7e-126 454.9 637 41.0
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 1.3e-125 454.5 630 41.7
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 2.8e-125 453.4 553 45.6
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 4.8e-125 452.6 639 41.9
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 1.1e-124 451.4 584 44.3
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 5.3e-124 449.1 676 40.7
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 7.0e-124 448.7 635 42.2
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 4.5e-123 446.0 661 41.5
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 5.9e-123 445.7 605 42.8
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 1.7e-122 444.1 569 44.1
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 1.5e-121 441.0 531 46.1
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 1.9e-121 440.7 673 40.3
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 3.2e-121 439.9 636 41.5
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 5.5e-121 439.1 685 40.3
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 2.1e-120 437.2 619 42.0
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.1e-120 437.2 660 40.9
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 2.7e-120 436.8 645 40.6
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 4.7e-120 436.0 785 36.3
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 1.8e-119 434.1 604 44.0
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 2.3e-119 433.7 630 40.5
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 3.0e-119 433.3 532 45.7
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 4.0e-119 433.0 653 40.3
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 5.2e-119 432.6 652 41.7
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 6.8e-119 432.2 622 41.6
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 1.5e-118 431.0 570 44.7
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 2.0e-118 430.6 641 41.5
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 2.6e-118 430.3 628 41.6
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 4.4e-118 429.5 621 42.8
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 7.5e-118 428.7 611 41.2
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 1.8e-116 424.1 617 41.3
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.0e-115 420.6 632 41.1
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 3.5e-115 419.9 685 39.4
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 5.9e-115 419.1 725 39.3
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 2.9e-114 416.8 587 42.6
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 5.0e-114 416.0 542 41.9
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 5.0e-114 416.0 542 41.9
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 6.5e-114 415.6 561 42.6
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 1.9e-113 414.1 540 42.6
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 2.1e-112 410.6 584 40.9
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 2.3e-111 407.1 539 41.9
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 4.9e-109 399.4 530 43.6
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 2.0e-107 394.0 552 42.0
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 8.9e-103 378.6 690 36.5
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 2.6e-94 350.5 546 39.9
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.7e-91 340.5 588 38.1
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 6.0e-91 339.3 521 40.7
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 2.5e-89 334.0 453 43.7
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 2.4e-76 290.8 531 36.2
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 8.1e-72 275.8 803 28.0
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 3.4e-70 270.4 759 27.8
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 6.6e-66 256.1 305 44.9
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 1.3e-64 251.9 486 39.5
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 9.0e-63 245.7 396 40.4
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 3.8e-61 240.4 199 59.8
RcHm_v2.0_Chr3g0484121 Rosa chinensis HOM05D005255 ORTHO05D006276 3.8e-61 240.4 198 55.6
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 9.6e-57 225.7 928 24.6
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 9.6e-57 225.7 928 24.6
Nitab4.5_0000826g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 4.5e-54 216.9 304 42.1
MSTRG.6398 Avicennia marina HOM05D005255 ORTHO05D006276 4.9e-53 213.4 176 55.1
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 8.4e-53 212.6 1010 23.3
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 7.1e-52 209.5 172 58.7
unitig_8.g3497 Utricularia gibba HOM05D005255 ORTHO05D006276 3.5e-51 207.2 228 46.5
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 2.4e-47 194.5 316 38.3
SEGI_00937 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 4.0e-47 193.7 177 49.2
vmacro09038 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.7e-45 188.3 145 57.9
SMO364G0001 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 8.7e-42 176.0 613 26.9
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 2.5e-33 147.9 349 35.0
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 4.8e-32 143.7 143 49.0
Nitab4.5_0001618g0070 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.4e-31 141.4 122 51.6
Sopen04g008710 Solanum pennellii HOM05D005255 ORTHO05D006276 4.1e-31 140.6 122 52.5
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 9.4e-28 129.4 298 37.2
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 3.3e-25 120.9 79 63.3
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 4.4e-25 120.6 172 43.0
vmacro09037 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 2.2e-24 118.2 265 34.3
Ca_08424_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 2.8e-24 117.9 105 60.0
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.8e-24 117.9 107 53.3
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 1.2e-22 112.5 167 41.3
Lsat_1_v5_gn_8_83120 Lactuca sativa HOM05D005255 ORTHO05D006276 1.1e-20 105.9 183 34.4
SEGI_13590 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.4e-20 105.5 80 52.5
vmacro09036 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 9.4e-20 102.8 80 58.8
Ca_20730_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.6e-19 102.1 381 26.5
FAN14G4897 Fragaria x ananassa HOM05D005255 ORTHO05D006276 3.9e-18 97.4 137 38.7
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 3.3e-17 94.4 65 61.5
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 4.4e-17 94.0 79 55.7
SEGI_39771 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 1.3e-16 92.4 80 48.8
Pp3c12_23820 Physcomitrium patens HOM05D005255 ORTHO05D006276 4.8e-16 90.5 78 53.8
Lsat_1_v5_gn_5_6521 Lactuca sativa HOM05D005255 ORTHO05D006276 6.3e-16 90.1 91 45.1
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 4.1e-15 87.4 60 60.0
Pp3c7_24750 Physcomitrium patens HOM05D002556 ORTHO05D003153 3.5e-14 84.3 227 25.6
Pp3c7_24754 Physcomitrium patens HOM05D002556 ORTHO05D003153 3.5e-14 84.3 227 25.6
TAR624G0532 Trochodendron aralioides HOM05D005255 ORTHO05D006276 4.5e-14 84.0 72 51.4
SEGI_06354 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 1.0e-13 82.8 67 64.2
CAN.G1237.19 Capsicum annuum HOM05D005255 ORTHO05D006276 1.3e-13 82.4 64 60.9
SMO364G0772 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 1.3e-13 82.4 169 33.7
AL6G49810 Arabidopsis lyrata HOM05D002556 ORTHO05D003153 3.8e-13 80.9 189 27.5
AT4G03130 Arabidopsis thaliana HOM05D002556 ORTHO05D003153 6.5e-13 80.1 189 27.0
CiPaw.01G154300 Carya illinoinensis HOM05D002556 ORTHO05D003153 3.2e-12 77.8 260 23.1
Ciclev10004184m.g Citrus clementina HOM05D002556 ORTHO05D003153 3.2e-12 77.8 195 26.2
DCAR_002786 Daucus carota HOM05D001702 ORTHO05D003153 5.5e-12 77.0 222 23.9
SHI00324 Sapria himalayana HOM05D002556 ORTHO05D003153 7.2e-12 76.6 343 21.9
TWI09G1603 Tripterygium wilfordii HOM05D002556 ORTHO05D003153 9.4e-12 76.3 197 25.9
HanXRQChr13g0410841 Helianthus annuus HOM05D002556 ORTHO05D003153 2.1e-11 75.1 261 24.5
SGA_v2.0_scaffold11G05759 Striga asiatica HOM05D002556 ORTHO05D003153 2.1e-11 75.1 238 22.7
PSO447G0225 Papaver somniferum HOM05D002556 ORTHO05D003153 2.7e-11 74.7 202 24.8
Eucgr.L01602 Eucalyptus grandis HOM05D002556 ORTHO05D003153 6.1e-11 73.6 342 21.9
SMO119G0101 Selaginella moellendorffii HOM05D002556 ORTHO05D003153 8.0e-11 73.2 172 27.3
Hund18028 Selenicereus undatus HOM05D002556 ORTHO05D003153 1.4e-10 72.4 225 22.7
Duzib212G1036 Durio zibethinus HOM05D002556 ORTHO05D003153 1.8e-10 72.0 164 27.4
PSO210G2558 Papaver somniferum HOM05D002556 ORTHO05D003153 2.3e-10 71.6 181 23.8
FAN20G2016 Fragaria x ananassa HOM05D002556 ORTHO05D003153 8.8e-10 69.7 202 24.3
FAN20G3156 Fragaria x ananassa HOM05D002556 ORTHO05D003153 8.8e-10 69.7 202 23.8
FAN27G2445 Fragaria x ananassa HOM05D002556 ORTHO05D003153 8.8e-10 69.7 202 23.8
CAN.G1006.25 Capsicum annuum HOM05D002556 ORTHO05D003153 1.5e-09 68.9 172 22.7
FvH4_2g24660 Fragaria vesca HOM05D002556 ORTHO05D003153 1.5e-09 68.9 202 23.8
FAN24G1081 Fragaria x ananassa HOM05D002556 ORTHO05D008572 2.6e-09 68.2 193 23.3
PGR044G1086 Punica granatum HOM05D002556 ORTHO05D003153 3.3e-09 67.8 177 23.2
PGR088G0009 Punica granatum HOM05D002556 ORTHO05D003153 3.3e-09 67.8 177 23.2
FAN15G0898 Fragaria x ananassa HOM05D002556 ORTHO05D003153 4.4e-09 67.4 202 23.8
Phvul.006G160300 Phaseolus vulgaris HOM05D002556 ORTHO05D003153 9.7e-09 66.2 179 22.9
PGSC0003DMG400022845 Solanum tuberosum HOM05D002556 ORTHO05D003153 9.7e-09 66.2 306 20.3
AUR62042844 Chenopodium quinoa HOM05D002556 ORTHO05D003153 1.3e-08 65.9 191 24.1
Ca_13718_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.3e-08 65.9 47 57.4
RcHm_v2.0_Chr6g0292491 Rosa chinensis HOM05D002556 ORTHO05D003153 3.7e-08 64.3 198 23.2
Hund20629 Selenicereus undatus HOM05D002556 ORTHO05D003153 4.8e-08 63.9 210 21.9
BolSC21t60285H Brassica oleracea HOM05D005255 ORTHO05D021741 1.8e-07 62.0 81 40.7
arahy.Tifrunner.gnm1.ann1.CR3TYE Arachis hypogaea HOM05D002556 ORTHO05D003153 3.1e-07 61.2 310 21.0
AUR62040727 Chenopodium quinoa HOM05D002556 ORTHO05D003153 1.2e-06 59.3 189 22.2
arahy.Tifrunner.gnm1.ann1.I12U39 Arachis hypogaea HOM05D002556 ORTHO05D003153 5.9e-06 57.0 376 20.7


User provided reference genes

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