Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 5.2e-134 481.1 250 100.0
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 4.6e-90 335.1 237 70.5
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 8.5e-52 208.0 237 43.0
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 2.5e-51 206.5 232 44.4
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 7.2e-51 204.9 228 43.4
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 9.3e-51 204.5 254 41.7
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 9.3e-51 204.5 254 41.7
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 1.2e-50 204.1 237 42.6
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 1.6e-50 203.8 227 43.6
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 2.7e-50 203.0 229 44.1
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 7.9e-50 201.4 225 48.0
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 7.9e-50 201.4 235 40.9
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 1.8e-49 200.3 228 45.2
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 3.9e-49 199.1 225 47.1
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 8.7e-49 198.0 232 43.1
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 8.7e-49 198.0 228 44.3
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 1.1e-48 197.6 152 67.8
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 2.5e-48 196.4 228 41.7
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 4.3e-48 195.7 232 43.1
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 7.4e-48 194.9 232 44.4
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 9.7e-48 194.5 229 44.5
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 3.7e-47 192.6 237 40.1
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 8.2e-47 191.4 247 40.1
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.1e-46 191.0 239 39.3
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 1.1e-46 191.0 230 39.1
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 1.4e-46 190.7 228 39.9
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 1.4e-46 190.7 228 42.5
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 1.8e-46 190.3 226 42.0
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 2.4e-46 189.9 229 39.7
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 3.1e-46 189.5 238 42.9
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 4.1e-46 189.1 222 43.2
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 5.3e-46 188.7 232 40.9
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 9.1e-46 188.0 235 40.4
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 1.5e-45 187.2 228 41.7
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 2.0e-45 186.8 232 41.8
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 2.0e-45 186.8 217 43.3
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 2.6e-45 186.4 237 42.2
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 4.5e-45 185.7 234 41.0
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 4.5e-45 185.7 236 42.8
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 4.5e-45 185.7 230 37.8
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 5.9e-45 185.3 225 41.8
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 7.7e-45 184.9 231 43.3
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 1.0e-44 184.5 228 40.8
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 1.0e-44 184.5 231 42.4
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 1.7e-44 183.7 236 39.8
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 2.2e-44 183.3 226 42.0
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 6.5e-44 181.8 231 42.0
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 1.1e-43 181.0 231 40.7
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 1.4e-43 180.6 233 39.5
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 4.2e-43 179.1 234 41.9
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 5.5e-43 178.7 226 40.7
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 9.4e-43 177.9 231 37.7
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 4.6e-42 175.6 240 41.2
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 7.9e-42 174.9 238 38.7
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 8.8e-41 171.4 231 37.2
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 8.8e-41 171.4 225 39.6
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 1.5e-40 170.6 227 37.9
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 1.5e-40 170.6 227 41.4
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 2.6e-40 169.9 225 39.1
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 5.7e-40 168.7 225 39.6
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 7.4e-40 168.3 225 40.4
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 1.3e-39 167.5 228 40.4
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 2.2e-39 166.8 223 41.3
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 2.8e-39 166.4 227 37.0
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 2.8e-39 166.4 228 37.7
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 4.8e-39 165.6 232 38.8
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 1.4e-38 164.1 235 38.3
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 2.4e-38 163.3 231 39.0
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 3.1e-38 162.9 233 39.9
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 4.1e-38 162.5 230 36.1
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 6.9e-38 161.8 231 38.5
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 6.9e-38 161.8 231 38.5
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 9.1e-38 161.4 232 38.4
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 9.1e-38 161.4 216 41.2
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 1.2e-37 161.0 235 37.0
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 2.6e-37 159.8 231 38.1
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 2.6e-37 159.8 231 38.1
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 3.4e-37 159.5 222 40.5
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 4.5e-37 159.1 231 36.8
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 1.3e-36 157.5 235 37.4
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 6.5e-36 155.2 235 35.7
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 6.5e-36 155.2 232 36.6
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 6.5e-36 155.2 230 36.5
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 8.5e-36 154.8 230 36.1
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 1.1e-35 154.5 231 37.2
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.9e-35 153.7 232 36.6
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 7.2e-35 151.8 213 38.5
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 1.8e-33 147.1 236 36.4
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.3e-33 146.7 156 46.8
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 1.3e-31 141.0 228 34.6
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 6.3e-31 138.7 307 28.7
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 1.4e-30 137.5 166 41.0
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 1.4e-30 137.5 192 41.1
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.1e-30 136.3 166 39.2
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.6e-29 133.3 229 32.8
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 5.9e-29 132.1 163 41.7
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 8.5e-28 128.3 306 29.1
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 1.5e-27 127.5 158 43.0
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 2.5e-27 126.7 260 31.9
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 1.2e-26 124.4 141 46.8
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 3.0e-25 119.8 213 34.3
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.0e-24 117.1 223 32.3
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 3.8e-20 102.8 153 38.6
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 8.5e-20 101.7 237 28.3
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 4.2e-19 99.4 139 41.7
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 5.5e-19 99.0 153 37.3
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 4.7e-18 95.9 153 36.6
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 3.1e-14 83.2 340 23.2
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 2.7e-13 80.1 72 50.0
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 1.0e-12 78.2 92 38.0
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 1.0e-12 78.2 64 51.6
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 2.9e-12 76.6 86 40.7
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.2e-10 71.2 72 40.3
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 4.7e-10 69.3 52 53.8
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.8e-09 67.4 109 34.9
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 2.3e-09 67.0 60 53.3
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 3.0e-09 66.6 86 38.4
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 2.0e-08 63.9 103 34.0
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 9.8e-08 61.6 137 32.1


User provided reference genes

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