Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0371500 Oryza sativa ssp. japonica HOM05D007654 ORTHO05D009697 2.5e-26 121.3 61 100.0
Zm00001eb365450 Zea mays HOM05D007654 ORTHO05D009697 1.2e-15 85.9 53 75.5
AUR62034665 Chenopodium quinoa HOM05D007654 ORTHO05D009697 1.4e-13 79.0 52 67.3
SalBow3G4040 Salvia bowleyana HOM05D007654 ORTHO05D009697 1.4e-13 79.0 52 65.4
Thhalv10006348m.g Eutrema salsugineum HOM05D007654 ORTHO05D009697 4.2e-13 77.4 54 66.7
AUR62008575 Chenopodium quinoa HOM05D000096 ORTHO05D000045 5.5e-13 77.0 52 67.3
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 5.5e-13 77.0 52 65.4
Cfa005999 Carpinus fangiana HOM05D007654 ORTHO05D009697 7.2e-13 76.6 51 64.7
vmacro14977 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 9.4e-13 76.3 50 66.0
Aa31LG10G16730 Aethionema arabicum HOM05D007654 ORTHO05D009697 1.6e-12 75.5 54 64.8
Hund18071 Selenicereus undatus HOM05D007654 ORTHO05D009697 1.6e-12 75.5 50 68.0
CANSAT25G3801 Cannabis sativa HOM05D007654 ORTHO05D009697 2.1e-12 75.1 50 64.0
Migut.D00166 Erythranthe guttata HOM05D007654 ORTHO05D009697 2.1e-12 75.1 52 61.5
Oeu057570.1 Olea europaea HOM05D007654 ORTHO05D009697 2.1e-12 75.1 52 61.5
Gohir.A12G009300 Gossypium hirsutum HOM05D007654 ORTHO05D009697 4.6e-12 73.9 54 59.3
Gohir.D12G009200 Gossypium hirsutum HOM05D007654 ORTHO05D009697 4.6e-12 73.9 54 59.3
Gorai.008G009300 Gossypium raimondii HOM05D007654 ORTHO05D009697 4.6e-12 73.9 54 59.3
QL12p024465 Quercus lobata HOM05D007654 ORTHO05D009697 4.6e-12 73.9 50 64.0
HanXRQChr11g0350121 Helianthus annuus HOM05D007654 ORTHO05D009697 6.1e-12 73.6 51 62.7
AL5G45700 Arabidopsis lyrata HOM05D007654 ORTHO05D009697 7.9e-12 73.2 54 61.1
EL10Ac7g17424 Beta vulgaris HOM05D007654 ORTHO05D009697 7.9e-12 73.2 52 65.4
Carub.0005s2957 Capsella rubella HOM05D007654 ORTHO05D009697 7.9e-12 73.2 54 63.0
Rhsim01G0281900 Rhododendron simsii HOM05D007654 ORTHO05D009697 7.9e-12 73.2 50 64.0
TWI59G0903 Tripterygium wilfordii HOM05D007654 ORTHO05D009697 7.9e-12 73.2 51 60.8
CARHR173210 Cardamine hirsuta HOM05D007654 ORTHO05D009697 1.0e-11 72.8 54 61.1
GSVIVG01010984001 Vitis vinifera HOM05D007654 ORTHO05D009697 1.0e-11 72.8 51 58.8
Duzib138G0105 Durio zibethinus HOM05D007654 ORTHO05D009697 1.4e-11 72.4 54 59.3
MBI18_g01968_MAGBIO Magnolia biondii HOM05D007654 ORTHO05D009697 1.4e-11 72.4 50 62.0
A09p54770 Brassica napus HOM05D007654 ORTHO05D009697 1.8e-11 72.0 54 61.1
C08p37630 Brassica napus HOM05D007654 ORTHO05D009697 1.8e-11 72.0 54 61.1
BolC8t51346H Brassica oleracea HOM05D007654 ORTHO05D009697 1.8e-11 72.0 54 61.1
BraA09t40886Z Brassica rapa HOM05D007654 ORTHO05D009697 1.8e-11 72.0 54 61.1
Atru.chr5.1253 Acer truncatum HOM05D007654 ORTHO05D009697 2.3e-11 71.6 51 58.8
MD11G1300800 Malus domestica HOM05D007654 ORTHO05D009697 2.3e-11 71.6 51 58.8
Cpa.g.sc9.182 Carica papaya HOM05D007654 ORTHO05D009697 3.0e-11 71.2 47 63.8
COL.COLO4_08007 Corchorus olitorius HOM05D000091 ORTHO05D003679 3.0e-11 71.2 54 57.4
FAN27G0435 Fragaria x ananassa HOM05D000091 ORTHO05D003679 3.0e-11 71.2 54 55.6
Manes.05G066600 Manihot esculenta HOM05D007654 ORTHO05D009697 3.0e-11 71.2 50 60.0
CSS0025949 Camellia sinensis var. sinensis HOM05D007654 ORTHO05D009697 3.9e-11 70.9 52 59.6
ClCG09G006300 Citrullus lanatus HOM05D007654 ORTHO05D009697 3.9e-11 70.9 51 54.9
ECA236G4373 Erigeron canadensis HOM05D007654 ORTHO05D009697 3.9e-11 70.9 51 60.8
unitig_0.g650 Utricularia gibba HOM05D007654 ORTHO05D009697 3.9e-11 70.9 52 55.8
MELO3C016052.2 Cucumis melo HOM05D007654 ORTHO05D009697 5.1e-11 70.5 51 56.9
CsaV3_7G028850 Cucumis sativus L. HOM05D007654 ORTHO05D009697 5.1e-11 70.5 51 56.9
Potri.014G133600 Populus trichocarpa HOM05D007654 ORTHO05D009697 5.1e-11 70.5 51 56.9
Prupe.8G254700 Prunus persica HOM05D007654 ORTHO05D009697 5.1e-11 70.5 51 58.8
Thecc.01G292900 Theobroma cacao HOM05D007654 ORTHO05D009697 5.1e-11 70.5 51 60.8
MD03G1278400 Malus domestica HOM05D007654 ORTHO05D009697 6.7e-11 70.1 51 56.9
AT3G62920 Arabidopsis thaliana HOM05D007654 ORTHO05D009697 8.8e-11 69.7 54 57.4
BcaB02g08089 Brassica carinata HOM05D007654 ORTHO05D009697 8.8e-11 69.7 54 57.4
Dinv33011 Davidia involucrata HOM05D007654 ORTHO05D009697 8.8e-11 69.7 52 53.8
Eucgr.H01198 Eucalyptus grandis HOM05D007654 ORTHO05D009697 8.8e-11 69.7 51 58.8
FAN15G1923 Fragaria x ananassa HOM05D000091 ORTHO05D003679 8.8e-11 69.7 54 53.7
Lsat_1_v5_gn_8_54301 Lactuca sativa HOM05D007654 ORTHO05D009697 8.8e-11 69.7 52 53.8
Lj1g0000519 Lotus japonicus HOM05D007654 ORTHO05D009697 8.8e-11 69.7 50 58.0
Nn3g21360 Nelumbo nucifera HOM05D007654 ORTHO05D009697 8.8e-11 69.7 51 56.9
RcHm_v2.0_Chr6g0292931 Rosa chinensis HOM05D007654 ORTHO05D009697 8.8e-11 69.7 51 58.8
TPR.G9273 Trifolium pratense HOM05D007654 ORTHO05D009697 8.8e-11 69.7 52 59.6
PSO170G3373 Papaver somniferum HOM05D007654 ORTHO05D009697 1.1e-10 69.3 52 53.8
Phvul.001G203700 Phaseolus vulgaris HOM05D007654 ORTHO05D009697 1.1e-10 69.3 52 59.6
Sed0025850 Sechium edule HOM05D007654 ORTHO05D009697 1.1e-10 69.3 51 56.9
Actinidia21070 Actinidia chinensis HOM05D007654 ORTHO05D009697 1.5e-10 68.9 50 60.0
Haze_04848 Corylus avellana HOM05D007654 ORTHO05D009697 1.5e-10 68.9 51 58.8
Eucgr.L03487 Eucalyptus grandis HOM05D007654 ORTHO05D009697 1.5e-10 68.9 51 58.8
Manes.01G215200 Manihot esculenta HOM05D007654 ORTHO05D009697 1.5e-10 68.9 50 60.0
Aqoxy2G03067 Aquilegia oxysepala HOM05D007654 ORTHO05D009697 2.0e-10 68.6 51 56.9
Lsat_1_v5_gn_9_47321 Lactuca sativa HOM05D007654 ORTHO05D009697 2.0e-10 68.6 52 53.8
CiPaw.07G102300 Carya illinoinensis HOM05D007654 ORTHO05D009697 2.6e-10 68.2 51 58.8
FvH4_2g24970 Fragaria vesca HOM05D007654 ORTHO05D009697 2.6e-10 68.2 54 53.7
FAN24G2398 Fragaria x ananassa HOM05D000091 ORTHO05D003679 2.6e-10 68.2 54 53.7
Medtr7g108290 Medicago truncatula HOM05D000091 ORTHO05D003679 2.6e-10 68.2 52 59.6
PGR119G1851 Punica granatum HOM05D007654 ORTHO05D009697 2.6e-10 68.2 51 56.9
Hma1.2p1_0209F.1_g088920 Hydrangea macrophylla HOM05D007654 ORTHO05D009697 3.3e-10 67.8 52 53.8
Nitab4.5_0002006g0110 Nicotiana tabacum HOM05D007654 ORTHO05D009697 3.3e-10 67.8 52 55.8
C04p30320 Brassica napus HOM05D007654 ORTHO05D009697 4.4e-10 67.4 50 58.0
BolC4t24565H Brassica oleracea HOM05D007654 ORTHO05D009697 4.4e-10 67.4 50 58.0
Cc01_g20410 Coffea canephora HOM05D007654 ORTHO05D009697 5.7e-10 67.0 51 56.9
TAR636G0595 Trochodendron aralioides HOM05D007654 ORTHO05D009697 5.7e-10 67.0 51 52.9
Actinidia21074 Actinidia chinensis HOM05D007654 ORTHO05D009697 1.3e-09 65.9 46 60.9
A04p00450 Brassica napus HOM05D007654 ORTHO05D009697 1.3e-09 65.9 47 59.6
BraA04t15764Z Brassica rapa HOM05D007654 ORTHO05D009697 1.3e-09 65.9 47 59.6
Glyma.03G210600 Glycine max HOM05D007654 ORTHO05D009697 1.3e-09 65.9 50 58.0
Glyma.19G207800 Glycine max HOM05D007654 ORTHO05D009697 1.3e-09 65.9 50 58.0
PGSC0003DMG400011382 Solanum tuberosum HOM05D007654 ORTHO05D009697 1.3e-09 65.9 53 50.9
Ciclev10023123m.g Citrus clementina HOM05D007654 ORTHO05D009697 2.2e-09 65.1 51 52.9
Solyc09g074620.3 Solanum lycopersicum HOM05D007654 ORTHO05D009697 2.2e-09 65.1 52 51.9
Sopen09g029490 Solanum pennellii HOM05D007654 ORTHO05D009697 2.2e-09 65.1 52 51.9
Ca_09124_v3 Cicer arietinum L. HOM05D000091 ORTHO05D003679 2.8e-09 64.7 52 55.8
arahy.Tifrunner.gnm1.ann1.4942C7 Arachis hypogaea HOM05D007654 ORTHO05D009697 3.7e-09 64.3 51 54.9
arahy.Tifrunner.gnm1.ann1.3EGQ08 Arachis hypogaea HOM05D007654 ORTHO05D009697 4.8e-09 63.9 49 57.1
Sabra14G0099700 Salix brachista HOM05D000091 ORTHO05D003679 4.8e-09 63.9 51 51.0
vmacro14982 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 4.8e-09 63.9 47 59.6
Lalb_Chr15g0078691 Lupinus albus HOM05D007654 ORTHO05D009697 1.1e-08 62.8 49 55.1
AagrBONN_evm.TU.Sc2ySwM_344.4968 Anthoceros agrestis HOM05D007654 ORTHO05D009697 1.8e-08 62.0 45 55.6
SEGI_14019 Sequoiadendron giganteum HOM05D007654 ORTHO05D009697 2.4e-08 61.6 44 54.5
arahy.Tifrunner.gnm1.ann1.559R1C Arachis hypogaea HOM05D007654 ORTHO05D009697 4.1e-08 60.8 49 55.1
Nitab4.5_0001102g0070 Nicotiana tabacum HOM05D007654 ORTHO05D009697 9.1e-08 59.7 52 55.8
Mapoly0101s0010 Marchantia polymorpha HOM05D007654 ORTHO05D009697 3.4e-07 57.8 51 52.9
FAN20G1580 Fragaria x ananassa HOM05D007654 ORTHO05D009697 5.9e-07 57.0 54 48.1
Lsat_1_v5_gn_0_9401 Lactuca sativa HOM05D007654 ORTHO05D009697 1.3e-06 55.8 48 45.8
Dinv19737 Davidia involucrata HOM05D007654 ORTHO05D009697 8.5e-06 53.1 34 67.6


User provided reference genes

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