Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 4.0e-105 384.8 196 100.0
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 1.4e-81 306.6 194 80.4
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 6.2e-58 228.0 185 63.8
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 1.1e-57 227.3 190 63.2
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 1.1e-57 227.3 190 63.2
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 4.0e-57 225.3 184 63.0
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 2.0e-56 223.0 187 61.0
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 4.4e-56 221.9 187 61.0
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 8.4e-55 217.6 185 61.6
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 1.1e-54 217.2 190 57.9
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 1.4e-54 216.9 185 60.5
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 2.4e-54 216.1 185 61.1
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 3.2e-54 215.7 186 61.3
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 5.4e-54 214.9 187 59.9
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 5.4e-54 214.9 187 62.0
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 5.4e-54 214.9 187 62.0
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 5.4e-54 214.9 184 61.4
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 1.2e-53 213.8 184 59.8
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 1.6e-53 213.4 187 59.4
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.7e-53 212.6 185 59.5
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 2.7e-53 212.6 186 58.1
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 4.6e-53 211.8 191 59.7
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 7.8e-53 211.1 187 59.4
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 7.8e-53 211.1 194 57.7
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 1.0e-52 210.7 185 58.4
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 1.3e-52 210.3 185 57.3
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 2.3e-52 209.5 185 57.8
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 3.0e-52 209.1 191 58.6
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 3.9e-52 208.8 185 57.8
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 5.1e-52 208.4 186 59.7
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 5.1e-52 208.4 187 58.8
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 6.6e-52 208.0 185 56.8
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 8.7e-52 207.6 186 58.6
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 8.7e-52 207.6 183 60.1
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 8.7e-52 207.6 186 59.1
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 1.1e-51 207.2 186 60.2
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 1.1e-51 207.2 185 60.5
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 1.5e-51 206.8 187 58.8
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 1.9e-51 206.5 189 58.7
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 2.5e-51 206.1 192 55.7
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 2.5e-51 206.1 187 57.2
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 3.3e-51 205.7 184 57.1
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 5.6e-51 204.9 220 51.8
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 9.6e-51 204.1 189 57.7
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 9.6e-51 204.1 192 56.8
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 1.6e-50 203.4 184 54.3
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 2.1e-50 203.0 192 56.2
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 2.8e-50 202.6 188 56.9
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 2.8e-50 202.6 188 56.9
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 2.8e-50 202.6 191 57.1
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 3.6e-50 202.2 188 60.1
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 4.7e-50 201.8 186 57.5
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 8.1e-50 201.1 186 57.5
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 8.1e-50 201.1 193 56.0
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 1.4e-49 200.3 184 56.5
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 1.4e-49 200.3 197 56.3
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.4e-49 199.5 189 55.6
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 2.4e-49 199.5 185 58.9
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 4.0e-49 198.7 194 54.1
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 4.0e-49 198.7 190 56.3
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 4.0e-49 198.7 189 55.6
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 5.3e-49 198.4 190 55.8
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 5.3e-49 198.4 184 56.5
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 6.9e-49 198.0 190 55.8
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 6.9e-49 198.0 190 55.8
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 9.0e-49 197.6 185 56.2
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 1.2e-48 197.2 190 55.3
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 1.2e-48 197.2 184 56.0
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 1.2e-48 197.2 190 55.8
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 1.5e-48 196.8 188 55.9
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 1.5e-48 196.8 188 54.3
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.5e-48 196.8 190 57.4
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 2.0e-48 196.4 190 55.3
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 2.6e-48 196.1 188 57.4
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 2.6e-48 196.1 184 56.5
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 2.6e-48 196.1 185 55.7
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 5.8e-48 194.9 188 54.3
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 7.6e-48 194.5 186 56.5
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 9.9e-48 194.1 192 54.7
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 1.7e-47 193.4 187 55.1
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 1.7e-47 193.4 190 54.7
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 2.2e-47 193.0 185 53.0
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 6.4e-47 191.4 187 55.6
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 8.4e-47 191.0 184 56.5
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 1.4e-46 190.3 224 49.1
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 1.9e-46 189.9 190 53.7
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 2.4e-46 189.5 184 54.9
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 1.6e-45 186.8 185 54.6
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 4.6e-45 185.3 190 52.6
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 7.8e-45 184.5 185 52.4
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.0e-44 184.1 185 52.4
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 3.0e-44 182.6 187 51.9
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 1.9e-43 179.9 185 53.5
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 5.6e-43 178.3 185 51.9
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 9.6e-43 177.6 190 53.2
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 9.6e-43 177.6 185 53.0
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 1.6e-42 176.8 187 53.5
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 2.1e-42 176.4 185 50.8
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 3.6e-42 175.6 186 52.7
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 6.2e-42 174.9 185 51.4
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 8.1e-42 174.5 185 51.4
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 4.0e-41 172.2 158 57.6
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 9.0e-41 171.0 185 50.3
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 9.9e-40 167.5 185 50.3
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 1.9e-38 163.3 271 41.0
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 2.6e-32 142.9 141 53.2
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 4.5e-32 142.1 191 41.4
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 2.9e-31 139.4 183 47.5
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 3.3e-27 125.9 190 43.7
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 9.3e-22 107.8 119 50.4
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 3.5e-21 105.9 119 53.8
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 1.1e-17 94.4 144 41.7
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 3.1e-17 92.8 200 36.5
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 2.5e-14 83.2 123 41.5
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 2.7e-13 79.7 67 56.7
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 5.7e-11 72.0 45 68.9
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 6.9e-09 65.1 199 30.2
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 6.9e-09 65.1 43 65.1


User provided reference genes

Program Settings