Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 1.7e-167 592.8 354 100.0
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 7.1e-129 464.5 379 70.2
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 1.5e-83 313.9 331 48.9
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 5.9e-83 312.0 338 48.5
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 3.2e-81 306.2 331 49.2
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 4.2e-81 305.8 332 48.5
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 5.5e-81 305.4 331 47.4
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 9.4e-81 304.7 338 47.0
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 3.9e-79 299.3 336 46.7
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 6.7e-79 298.5 338 46.7
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 8.8e-79 298.1 330 47.9
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 1.1e-78 297.7 339 46.6
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 1.1e-78 297.7 330 48.2
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 2.0e-78 297.0 324 47.5
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 2.0e-78 297.0 330 46.4
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 2.0e-78 297.0 328 47.6
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 2.6e-78 296.6 331 47.7
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 2.6e-78 296.6 329 47.4
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.6e-78 296.6 330 47.6
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 2.6e-78 296.6 324 48.1
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 9.7e-78 294.7 329 48.0
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 1.3e-77 294.3 336 49.7
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.7e-77 293.9 330 47.6
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 3.7e-77 292.7 338 47.0
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 4.8e-77 292.4 326 47.2
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 6.3e-77 292.0 332 47.3
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 1.1e-76 291.2 330 46.4
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 1.4e-76 290.8 334 46.7
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 1.8e-76 290.4 332 45.8
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 2.4e-76 290.0 334 47.0
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 2.4e-76 290.0 338 46.4
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 4.1e-76 289.3 334 46.4
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 5.3e-76 288.9 326 47.5
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 9.1e-76 288.1 340 45.6
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 9.1e-76 288.1 336 47.0
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 9.1e-76 288.1 337 45.4
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 1.2e-75 287.7 336 45.5
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.2e-75 287.7 339 45.4
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 2.6e-75 286.6 326 46.9
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 2.6e-75 286.6 341 49.0
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 2.6e-75 286.6 324 54.3
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 4.5e-75 285.8 333 46.5
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 4.5e-75 285.8 326 46.3
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 5.9e-75 285.4 348 44.8
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 5.9e-75 285.4 327 46.2
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 7.7e-75 285.0 328 52.4
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 1.0e-74 284.6 333 45.9
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 1.0e-74 284.6 336 45.2
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.7e-74 283.9 335 44.8
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 2.2e-74 283.5 330 45.5
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 2.2e-74 283.5 344 44.5
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 5.0e-74 282.3 326 46.6
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 6.5e-74 282.0 348 43.7
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 6.5e-74 282.0 328 44.8
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 6.5e-74 282.0 331 45.3
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 8.5e-74 281.6 335 48.4
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.5e-74 281.6 320 53.4
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 8.5e-74 281.6 333 48.6
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 1.1e-73 281.2 346 44.8
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 1.5e-73 280.8 335 46.9
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 2.5e-73 280.0 332 45.2
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 2.5e-73 280.0 325 46.8
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 4.2e-73 279.3 345 44.6
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 7.2e-73 278.5 328 46.6
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 9.4e-73 278.1 326 51.8
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 3.6e-72 276.2 338 44.7
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 4.7e-72 275.8 345 43.5
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 6.1e-72 275.4 333 44.1
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 6.1e-72 275.4 330 46.4
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 1.0e-71 274.6 345 44.1
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 1.0e-71 274.6 332 44.0
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 2.3e-71 273.5 341 44.3
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 2.3e-71 273.5 335 43.9
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 5.2e-71 272.3 369 46.3
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 6.7e-71 271.9 273 50.9
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 8.8e-71 271.6 333 43.8
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 1.5e-70 270.8 328 47.9
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 2.0e-70 270.4 341 43.1
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 2.6e-70 270.0 325 50.2
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 5.7e-70 268.9 327 44.6
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 1.7e-69 267.3 332 47.9
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 1.4e-68 264.2 324 49.7
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 2.4e-68 263.5 307 46.9
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 3.1e-68 263.1 262 51.9
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 5.3e-68 262.3 346 42.5
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 5.3e-68 262.3 334 43.7
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 1.2e-67 261.2 324 45.1
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 2.7e-67 260.0 329 43.2
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 4.5e-67 259.2 310 45.5
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 5.0e-66 255.8 324 42.3
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 9.4e-65 251.5 401 37.7
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 2.1e-64 250.4 327 42.5
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 2.7e-64 250.0 393 42.0
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 3.6e-64 249.6 351 41.0
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 6.1e-64 248.8 326 46.6
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 6.1e-64 248.8 326 46.6
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 8.0e-64 248.4 354 41.2
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 1.4e-63 247.7 409 39.9
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 8.8e-63 245.0 425 38.6
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.5e-62 244.2 299 52.5
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 1.5e-62 244.2 328 44.2
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 2.0e-62 243.8 333 40.8
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 9.8e-62 241.5 409 40.6
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 1.7e-61 240.7 418 43.5
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 2.9e-58 229.9 262 45.8
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 3.8e-58 229.6 259 48.3
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 4.2e-57 226.1 334 37.7
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 6.1e-56 222.2 324 38.9
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 1.4e-55 221.1 328 39.3
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 2.3e-55 220.3 308 42.2
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 2.3e-55 220.3 303 42.6
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 1.1e-52 211.5 331 37.8
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 3.1e-52 209.9 327 37.0
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 4.1e-52 209.5 163 60.1
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 8.6e-50 201.8 334 38.6
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 5.6e-49 199.1 367 34.9
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 2.8e-48 196.8 324 36.1
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 4.7e-48 196.1 426 33.1
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 6.1e-48 195.7 329 37.4
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 8.0e-48 195.3 267 43.4
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 1.0e-47 194.9 329 37.4
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 3.1e-47 193.4 400 32.5
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 8.9e-47 191.8 327 35.2
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 1.7e-45 187.6 128 61.7
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 2.9e-45 186.8 323 35.9
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 1.1e-44 184.9 418 30.4
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 1.5e-30 137.9 98 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 3.3e-25 120.2 413 27.1
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 2.2e-21 107.5 224 36.2
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 6.6e-18 95.9 174 36.2
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 1.6e-16 91.3 213 34.3
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 4.4e-14 83.2 100 45.0
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 4.2e-12 76.6 57 61.4
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.6e-11 74.7 163 32.5
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 2.6e-06 57.4 124 33.9
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 4.5e-06 56.6 125 32.8
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 4.5e-06 56.6 125 32.8
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 4.5e-06 56.6 125 32.8
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 4.5e-06 56.6 86 37.2
SEGI_33966 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 4.5e-06 56.6 120 33.3
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 5.8e-06 56.2 125 32.8
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 5.8e-06 56.2 48 58.3
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 5.8e-06 56.2 125 32.8
Hma1.2p1_0257F.1_g103760 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 7.6e-06 55.8 134 32.1
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 7.6e-06 55.8 125 33.6


User provided reference genes

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