Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0363600 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D008041 2.3e-49 198.7 110 100.0
Zm00001eb346590 Zea mays HOM05D002674 ORTHO05D008041 7.0e-43 177.2 107 90.7
Actinidia32214 Actinidia chinensis HOM05D002674 ORTHO05D008041 6.6e-25 117.5 107 61.7
Nitab4.5_0001879g0010 Nicotiana tabacum HOM05D002674 ORTHO05D008041 6.6e-25 117.5 107 60.7
Nitab4.5_0008207g0030 Nicotiana tabacum HOM05D002674 ORTHO05D008041 6.6e-25 117.5 107 60.7
Peaxi162Scf00001g00445 Petunia axillaris HOM05D002674 ORTHO05D008041 6.6e-25 117.5 107 60.7
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 1.9e-24 115.9 107 62.6
CANSAT25G0502 Cannabis sativa HOM05D002674 ORTHO05D008041 9.5e-24 113.6 103 60.2
Solyc09g075100.3 Solanum lycopersicum HOM05D002674 ORTHO05D008041 1.2e-23 113.2 107 57.9
Sopen09g029920 Solanum pennellii HOM05D002674 ORTHO05D008041 1.2e-23 113.2 107 57.9
PGSC0003DMG400011376 Solanum tuberosum HOM05D002674 ORTHO05D008041 2.8e-23 112.1 107 57.0
CAN.G472.1 Capsicum annuum HOM05D002674 ORTHO05D008041 3.6e-23 111.7 102 58.8
unitig_61.g26303 Utricularia gibba HOM05D002674 ORTHO05D008041 3.6e-23 111.7 101 59.4
Dinv19696 Davidia involucrata HOM05D002674 ORTHO05D008041 4.7e-23 111.3 98 63.3
CiPaw.07G108500 Carya illinoinensis HOM05D002674 ORTHO05D008041 6.2e-23 110.9 101 62.4
QL12p028510 Quercus lobata HOM05D002674 ORTHO05D008041 6.2e-23 110.9 102 61.8
Aqoxy5G00753 Aquilegia oxysepala HOM05D002674 ORTHO05D008041 1.1e-22 110.2 106 57.5
MELO3C017957.2 Cucumis melo HOM05D002674 ORTHO05D008041 1.1e-22 110.2 103 58.3
Eucgr.H01115 Eucalyptus grandis HOM05D002674 ORTHO05D008041 1.1e-22 110.2 98 61.2
Sed0019690 Sechium edule HOM05D002674 ORTHO05D008041 1.1e-22 110.2 103 58.3
Oeu048338.1 Olea europaea HOM05D002674 ORTHO05D008041 1.8e-22 109.4 102 60.8
SalBow3G0298 Salvia bowleyana HOM05D002674 ORTHO05D008041 1.8e-22 109.4 96 60.4
SGA_v2.0_scaffold2G01395 Striga asiatica HOM05D002674 ORTHO05D008041 2.4e-22 109.0 101 59.4
ClCG10G010910 Citrullus lanatus HOM05D002674 ORTHO05D008041 3.1e-22 108.6 100 58.0
arahy.Tifrunner.gnm1.ann1.9NAT9F Arachis hypogaea HOM05D002674 ORTHO05D008041 4.0e-22 108.2 104 58.7
arahy.Tifrunner.gnm1.ann1.UV7MYU Arachis hypogaea HOM05D002674 ORTHO05D008041 4.0e-22 108.2 104 58.7
Glyma.10G018500 Glycine max HOM05D002674 ORTHO05D008041 4.0e-22 108.2 99 58.6
Lalb_Chr21g0306851 Lupinus albus HOM05D002674 ORTHO05D008041 4.0e-22 108.2 101 59.4
FvH4_2g25692 Fragaria vesca HOM05D002674 ORTHO05D008041 8.9e-22 107.1 103 58.3
CsaV3_4G000790 Cucumis sativus L. HOM05D002674 ORTHO05D008041 1.2e-21 106.7 103 57.3
Phvul.007G146200 Phaseolus vulgaris HOM05D002674 ORTHO05D008041 1.2e-21 106.7 104 58.7
TAR636G2182 Trochodendron aralioides HOM05D002674 ORTHO05D008041 1.2e-21 106.7 102 57.8
FvH4_3g17380 Fragaria vesca HOM05D002674 ORTHO05D008041 1.5e-21 106.3 104 55.8
FAN11G2206 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.5e-21 106.3 104 55.8
Lj5g0008305 Lotus japonicus HOM05D002674 ORTHO05D008041 2.0e-21 105.9 104 56.7
MSTRG.21632 Avicennia marina HOM05D002674 ORTHO05D008041 2.6e-21 105.5 102 57.8
Potri.014G129800 Populus trichocarpa HOM05D002674 ORTHO05D008041 2.6e-21 105.5 100 57.0
Haze_04934 Corylus avellana HOM05D002674 ORTHO05D008041 3.4e-21 105.1 101 57.4
Gohir.D08G085400 Gossypium hirsutum HOM05D002674 ORTHO05D008041 3.4e-21 105.1 100 58.0
Nn3g21482 Nelumbo nucifera HOM05D002674 ORTHO05D008041 3.4e-21 105.1 101 57.4
Sabra02G0154500 Salix brachista HOM05D002674 ORTHO05D008041 3.4e-21 105.1 100 57.0
VMungo0720G1979 Vigna mungo HOM05D002674 ORTHO05D008041 3.4e-21 105.1 104 57.7
FAN16G1943 Fragaria x ananassa HOM05D002674 ORTHO05D008041 4.4e-21 104.8 104 54.8
Psat6g166360 Pisum sativum HOM05D002674 ORTHO05D008041 5.8e-21 104.4 101 58.4
FAN25G1445 Fragaria x ananassa HOM05D002674 ORTHO05D008041 7.6e-21 104.0 104 55.8
CSS0018179 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D008041 9.9e-21 103.6 107 54.2
Ca_10338_v3 Cicer arietinum L. HOM05D002674 ORTHO05D008041 9.9e-21 103.6 99 58.6
Gohir.A08G076000 Gossypium hirsutum HOM05D002674 ORTHO05D008041 9.9e-21 103.6 100 56.0
CDE12G0521 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 1.3e-20 103.2 100 58.0
FAN21G2416 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.3e-20 103.2 104 54.8
TWI14G1447 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 1.3e-20 103.2 100 57.0
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 1.7e-20 102.8 100 56.0
Cpa.g.sc9.264 Carica papaya HOM05D002674 ORTHO05D008041 2.9e-20 102.1 103 57.3
Cc01_g20820 Coffea canephora HOM05D002674 ORTHO05D008041 3.8e-20 101.7 105 55.2
PGR119G0614 Punica granatum HOM05D002674 ORTHO05D008041 3.8e-20 101.7 98 58.2
RcHm_v2.0_Chr6g0293971 Rosa chinensis HOM05D002674 ORTHO05D008041 3.8e-20 101.7 103 56.3
Thecc.01G300000 Theobroma cacao HOM05D002674 ORTHO05D008041 3.8e-20 101.7 100 57.0
Cfa005915 Carpinus fangiana HOM05D002674 ORTHO05D008041 4.9e-20 101.3 101 55.4
Ciclev10022953m.g Citrus clementina HOM05D002674 ORTHO05D008041 6.4e-20 100.9 104 55.8
MD11G1310400 Malus domestica HOM05D002674 ORTHO05D008041 6.4e-20 100.9 101 56.4
GSVIVG01028011001 Vitis vinifera HOM05D002674 ORTHO05D008041 6.4e-20 100.9 98 56.1
Atru.chr5.1150 Acer truncatum HOM05D002674 ORTHO05D008041 8.4e-20 100.5 100 56.0
Migut.D00216 Erythranthe guttata HOM05D002674 ORTHO05D008041 8.4e-20 100.5 98 57.1
Prupe.8G261100 Prunus persica HOM05D002674 ORTHO05D008041 8.4e-20 100.5 103 58.3
Atru.chr7.1564 Acer truncatum HOM05D002674 ORTHO05D008041 1.1e-19 100.1 100 56.0
COL.COLO4_23349 Corchorus olitorius HOM05D002674 ORTHO05D008041 1.1e-19 100.1 100 56.0
Carub.0005s2947 Capsella rubella HOM05D002674 ORTHO05D008041 1.9e-19 99.4 100 57.0
MBI19_g25355_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D008041 2.4e-19 99.0 101 53.5
Rhsim13G0010400 Rhododendron simsii HOM05D002674 ORTHO05D008041 2.4e-19 99.0 123 52.0
Hund18156 Selenicereus undatus HOM05D002674 ORTHO05D008041 3.2e-19 98.6 103 55.3
Medtr1g088550 Medicago truncatula HOM05D002674 ORTHO05D008041 5.4e-19 97.8 99 55.6
AL5G45590 Arabidopsis lyrata HOM05D002674 ORTHO05D008041 7.1e-19 97.4 100 56.0
Thhalv10006327m.g Eutrema salsugineum HOM05D002674 ORTHO05D008041 7.1e-19 97.4 98 58.2
EL10Ac7g17468 Beta vulgaris HOM05D002674 ORTHO05D008041 1.2e-18 96.7 101 54.5
C04p30420 Brassica napus HOM05D002674 ORTHO05D008041 1.2e-18 96.7 100 56.0
BcaC02g10314 Brassica carinata HOM05D002674 ORTHO05D008041 1.6e-18 96.3 100 56.0
A04p00510 Brassica napus HOM05D002674 ORTHO05D008041 1.6e-18 96.3 100 56.0
BolC4t24576H Brassica oleracea HOM05D002674 ORTHO05D008041 1.6e-18 96.3 100 56.0
BraA04t15771Z Brassica rapa HOM05D002674 ORTHO05D008041 1.6e-18 96.3 100 56.0
ECA247G1692 Erigeron canadensis HOM05D002674 ORTHO05D008041 1.6e-18 96.3 104 53.8
Sp5g00710 Schrenkiella parvula HOM05D002674 ORTHO05D008041 1.6e-18 96.3 100 56.0
ATR0796G030 Amborella trichopoda HOM05D002674 ORTHO05D008041 2.1e-18 95.9 105 52.4
BcaC07g42733 Brassica carinata HOM05D002674 ORTHO05D008041 2.1e-18 95.9 98 56.1
AT3G62810 Arabidopsis thaliana HOM05D002674 ORTHO05D008041 3.5e-18 95.1 100 54.0
AUR62033146 Chenopodium quinoa HOM05D002674 ORTHO05D008041 4.6e-18 94.7 100 52.0
HanXRQChr15g0465661 Helianthus annuus HOM05D002674 ORTHO05D008041 6.0e-18 94.4 106 51.9
TWI23G1311 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 6.0e-18 94.4 100 53.0
Manes.01G218700 Manihot esculenta HOM05D002674 ORTHO05D008041 1.0e-17 93.6 100 54.0
Aa31LG10G16570 Aethionema arabicum HOM05D002674 ORTHO05D008041 1.3e-17 93.2 100 55.0
AUR62008625 Chenopodium quinoa HOM05D002674 ORTHO05D008041 1.3e-17 93.2 100 51.0
TPR.G34008 Trifolium pratense HOM05D002674 ORTHO05D008041 1.7e-17 92.8 99 52.5
PSO210G6076 Papaver somniferum HOM05D002674 ORTHO05D008041 3.0e-17 92.0 101 52.5
CARHR173080 Cardamine hirsuta HOM05D002674 ORTHO05D008041 5.1e-17 91.3 101 53.5
BraA09t40877Z Brassica rapa HOM05D002674 ORTHO05D008041 6.6e-17 90.9 98 55.1
PSO832G1306 Papaver somniferum HOM05D002674 ORTHO05D008041 6.6e-17 90.9 101 52.5
BcaB02g08097 Brassica carinata HOM05D002674 ORTHO05D008041 1.9e-16 89.4 103 53.4
MD03G1287900 Malus domestica HOM05D002674 ORTHO05D008041 2.5e-16 89.0 99 52.5
PGR044G1069 Punica granatum HOM05D002674 ORTHO05D008041 2.5e-16 89.0 100 53.0
A09p54660 Brassica napus HOM05D002674 ORTHO05D008041 3.3e-16 88.6 98 54.1
HPP92_013721 Vanilla planifolia HOM05D002674 ORTHO05D008041 3.3e-16 88.6 174 36.2
vmacro02452 Vaccinium macrocarpon HOM05D002674 ORTHO05D008041 9.6e-16 87.0 155 42.6
Lalb_Chr02g0143261 Lupinus albus HOM05D000266 ORTHO05D008041 1.2e-15 86.7 83 56.6
Sabra14G0096400 Salix brachista HOM05D002674 ORTHO05D008041 1.1e-14 83.6 101 47.5
SEGI_38702 Sequoiadendron giganteum HOM05D002674 ORTHO05D008041 1.1e-14 83.6 98 45.9
SalBow3G1515 Salvia bowleyana HOM05D002674 ORTHO05D008041 2.2e-12 75.9 79 51.9
SalBow5G2922 Salvia bowleyana HOM05D002674 ORTHO05D008041 8.4e-12 73.9 77 53.2
Oeu010670.1 Olea europaea HOM05D002674 ORTHO05D008041 1.9e-11 72.8 102 48.0
Duzib138G1033 Durio zibethinus HOM05D002674 ORTHO05D008041 2.4e-11 72.4 77 53.2
Haze_04957 Corylus avellana HOM05D002674 ORTHO05D008041 3.2e-11 72.0 80 52.5
DCAR_002831 Daucus carota HOM05D000067 ORTHO05D001807 4.2e-11 71.6 79 54.4
CDE01G0164 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 1.6e-10 69.7 80 52.5
Gorai.004G089900 Gossypium raimondii HOM05D002674 ORTHO05D008041 1.6e-10 69.7 77 51.9
Hma1.2p1_0491F.1_g164520 Hydrangea macrophylla HOM05D002674 ORTHO05D008041 1.6e-10 69.7 76 52.6
Glyma.02G018200 Glycine max HOM05D002674 ORTHO05D008041 2.7e-10 68.9 81 49.4
Sc24g0003780 Simmondsia chinensis HOM05D002674 ORTHO05D008041 7.8e-10 67.4 80 52.5
Lsat_1_v5_gn_9_5640 Lactuca sativa HOM05D002674 ORTHO05D008643 1.0e-09 67.0 84 48.8
Pp3c9_7930 Physcomitrium patens HOM05D002674 ORTHO05D008041 3.0e-09 65.5 105 43.8
C08p37560 Brassica napus HOM05D002674 ORTHO05D008041 5.1e-09 64.7 75 48.0
AagrBONN_evm.TU.Sc2ySwM_362.373 Anthoceros agrestis HOM05D002674 ORTHO05D008041 4.3e-08 61.6 99 43.4
Ah.15g093210 Amaranthus hybridus HOM05D002674 ORTHO05D008041 9.6e-08 60.5 78 47.4
Mapoly0061s0038 Marchantia polymorpha HOM05D002674 ORTHO05D008041 2.8e-07 58.9 97 39.2


User provided reference genes

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