Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.6e-104 382.1 201 100.0
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 9.7e-83 310.5 191 86.9
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 9.7e-83 310.5 198 85.9
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.4e-65 252.7 151 86.8
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 5.4e-65 251.5 205 69.8
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 3.5e-64 248.8 206 68.0
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 4.5e-64 248.4 202 71.3
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 4.5e-64 248.4 202 68.3
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 7.7e-64 247.7 205 67.3
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 6.6e-63 244.6 147 87.1
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.9e-62 243.0 210 67.1
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 7.2e-62 241.1 207 66.7
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 9.5e-62 240.7 205 66.8
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 9.5e-62 240.7 160 82.5
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.2e-61 240.4 211 67.8
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 3.6e-61 238.8 205 65.4
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.6e-61 238.8 205 66.8
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 1.0e-60 237.3 206 63.6
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.8e-60 236.5 204 66.2
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.8e-60 236.5 204 66.2
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.0e-60 235.7 207 63.8
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 4.0e-60 235.3 205 65.4
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 6.8e-60 234.6 204 65.7
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 8.9e-60 234.2 202 66.8
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.2e-59 233.8 203 63.5
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.5e-59 233.4 207 62.3
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 2.0e-59 233.0 201 65.7
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 2.0e-59 233.0 203 65.5
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 2.6e-59 232.6 206 66.0
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 3.4e-59 232.3 203 65.0
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 5.7e-59 231.5 204 64.2
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 7.5e-59 231.1 204 63.2
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 7.5e-59 231.1 199 64.8
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 7.5e-59 231.1 204 64.7
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 9.8e-59 230.7 203 65.5
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.7e-58 229.9 205 62.9
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 2.2e-58 229.6 205 64.4
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.2e-58 229.6 205 63.4
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.8e-58 229.2 205 64.4
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 2.8e-58 229.2 202 62.4
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 2.8e-58 229.2 205 63.9
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.7e-58 228.8 201 62.7
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 3.7e-58 228.8 148 77.7
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 6.3e-58 228.0 203 64.0
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.8e-57 226.5 207 62.8
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.8e-57 226.5 206 62.1
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.8e-57 226.5 202 63.9
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 2.4e-57 226.1 207 62.8
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 2.4e-57 226.1 145 80.0
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 3.1e-57 225.7 181 67.4
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 4.1e-57 225.3 204 63.7
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 5.4e-57 224.9 226 60.2
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 5.4e-57 224.9 145 80.0
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 7.0e-57 224.6 205 65.4
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 7.0e-57 224.6 183 69.4
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 7.0e-57 224.6 183 69.4
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 7.0e-57 224.6 191 63.9
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.6e-56 223.4 143 81.8
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 2.7e-56 222.6 148 79.1
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.5e-56 222.2 205 62.0
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 4.5e-56 221.9 145 79.3
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 4.5e-56 221.9 204 61.3
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 4.5e-56 221.9 204 59.8
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 5.9e-56 221.5 208 60.6
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 5.9e-56 221.5 204 62.7
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.8e-56 221.1 145 76.6
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 7.8e-56 221.1 212 59.9
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.0e-55 220.7 208 62.0
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.7e-55 219.9 145 77.2
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 2.9e-55 219.2 145 75.9
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 3.8e-55 218.8 176 65.9
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.0e-55 218.4 145 75.9
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 6.6e-55 218.0 205 60.5
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 6.6e-55 218.0 206 59.2
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 6.6e-55 218.0 204 60.8
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 8.6e-55 217.6 205 58.5
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.1e-54 217.2 181 65.2
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.5e-54 216.9 145 78.6
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 2.5e-54 216.1 185 63.2
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.5e-54 216.1 163 66.9
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 3.3e-54 215.7 185 63.2
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 4.3e-54 215.3 148 73.6
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 9.5e-54 214.2 199 64.3
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.2e-53 213.8 148 72.3
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.2e-53 213.8 148 73.0
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-53 213.8 145 75.9
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-53 213.8 145 75.9
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.2e-53 213.8 148 72.3
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.2e-53 213.8 172 68.6
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.2e-53 213.8 172 68.6
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.6e-53 213.4 177 62.7
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.6e-53 213.4 210 57.1
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.6e-53 213.4 202 61.4
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-53 213.4 199 64.3
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-53 213.4 199 64.3
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-53 213.0 145 79.3
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 3.6e-53 212.2 207 58.5
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.7e-53 211.8 209 59.3
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 6.1e-53 211.5 145 72.4
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 6.1e-53 211.5 195 59.0
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.0e-53 211.1 145 74.5
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 8.0e-53 211.1 155 71.0
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.0e-52 210.7 145 73.1
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 1.0e-52 210.7 145 73.1
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.0e-52 210.7 237 53.6
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.4e-52 210.3 142 73.9
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.4e-52 210.3 213 56.8
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-52 210.3 199 63.3
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 1.8e-52 209.9 142 73.2
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 2.3e-52 209.5 213 56.8
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 2.3e-52 209.5 145 73.1
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 4.0e-52 208.8 145 75.9
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 4.0e-52 208.8 148 70.3
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.2e-51 207.2 148 70.9
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.2e-51 207.2 145 74.5
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 2.0e-51 206.5 164 65.9
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.7e-50 203.4 251 52.2
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.9e-50 202.6 209 57.4
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 2.9e-50 202.6 145 73.8
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 3.7e-50 202.2 150 72.0
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 3.7e-50 202.2 215 59.5
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 3.7e-50 202.2 215 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 4.9e-50 201.8 145 71.0
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 3.2e-49 199.1 128 78.1
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 3.2e-49 199.1 183 62.3
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 7.0e-49 198.0 130 78.5
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 9.2e-49 197.6 215 58.1
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.2e-48 197.2 181 60.8
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 2.0e-48 196.4 212 54.2
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.7e-48 196.1 202 55.4
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 2.3e-47 193.0 204 54.4
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 3.3e-46 189.1 128 75.0
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.1e-45 186.4 145 68.3
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.8e-45 186.0 162 63.0
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.3e-44 183.0 145 66.2
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 2.6e-43 179.5 166 57.2
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.9e-41 173.3 174 62.1
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.2e-40 170.6 146 61.0
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.3e-39 166.4 152 62.5
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 3.0e-39 166.0 154 58.4
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 8.6e-39 164.5 147 57.8
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-38 162.9 101 83.2
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 7.3e-38 161.4 186 52.7
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 9.5e-38 161.0 109 76.1
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.6e-37 160.2 145 63.4
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 3.1e-36 156.0 98 78.6
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 8.9e-36 154.5 140 61.4
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-35 154.1 156 59.0
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 3.4e-35 152.5 227 46.7
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 9.9e-35 151.0 95 84.2
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.3e-31 140.6 97 76.3
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.6e-29 133.7 82 81.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 9.2e-25 117.9 94 66.0
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 8.1e-21 104.8 133 48.1
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.4e-20 104.0 101 53.5
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.2e-19 100.9 145 37.2
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 8.4e-18 94.7 65 72.3
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 2.5e-14 83.2 133 33.8
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 2.4e-12 76.6 101 49.5
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.6e-11 73.2 68 58.8
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 2.4e-09 66.6 140 34.3
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.3e-07 60.8 36 77.8
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 5.6e-06 55.5 32 75.0


User provided reference genes

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