Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 0.0e+00 1442.2 702 100.0
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 7.5e-223 777.7 542 70.1
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.6e-212 743.4 687 53.6
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.7e-211 740.0 681 53.6
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.6e-210 734.9 681 53.6
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.2e-207 727.2 672 53.6
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 3.2e-205 719.2 680 52.9
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 9.2e-205 717.6 687 52.0
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.2e-204 717.2 672 51.9
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.6e-204 715.3 672 53.3
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 4.6e-204 715.3 672 52.5
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.1e-202 710.7 684 51.9
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.1e-202 710.7 673 52.0
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.5e-202 710.3 686 52.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.9e-202 709.9 707 50.4
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 3.3e-202 709.1 667 51.9
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 4.3e-202 708.8 689 52.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 5.6e-202 708.4 682 50.3
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 7.3e-202 708.0 683 52.6
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.1e-201 706.4 673 53.0
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.7e-201 705.3 694 51.6
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 4.7e-201 705.3 685 51.5
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.4e-200 703.7 684 51.6
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.8e-200 703.4 703 51.4
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.8e-200 703.4 674 50.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.2e-199 700.7 674 51.0
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.2e-199 700.7 677 50.7
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 2.0e-199 699.9 694 51.0
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 2.6e-199 699.5 678 51.8
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.4e-199 699.1 681 51.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 7.6e-199 698.0 679 50.7
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.3e-198 697.2 674 51.2
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.7e-198 696.8 675 50.5
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.7e-198 696.8 684 51.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.8e-198 695.7 676 50.7
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 4.9e-198 695.3 675 50.2
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 6.4e-198 694.9 659 53.0
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.9e-197 693.3 700 50.4
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.4e-197 693.0 613 54.5
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 4.1e-197 692.2 675 50.4
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 5.4e-197 691.8 715 49.2
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 7.1e-197 691.4 684 50.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.2e-197 691.0 687 50.7
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 9.2e-197 691.0 674 50.7
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.1e-196 689.9 679 50.8
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.5e-196 689.1 691 50.7
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 4.6e-196 688.7 679 50.5
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 7.8e-196 688.0 689 50.2
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.0e-195 687.6 687 50.7
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.3e-195 687.2 703 49.8
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.5e-194 682.9 681 50.7
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.3e-194 682.6 679 50.2
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.3e-194 682.6 681 50.1
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 4.3e-194 682.2 678 50.0
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 5.6e-194 681.8 676 50.4
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 5.6e-194 681.8 678 50.4
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 7.3e-194 681.4 709 48.4
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 9.6e-194 681.0 724 48.1
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.2e-193 680.6 679 50.7
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.1e-193 679.9 679 50.7
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 8.1e-193 677.9 677 49.8
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.4e-192 677.2 679 51.3
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 9.0e-192 674.5 682 49.7
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.5e-191 673.7 680 50.0
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.0e-191 673.3 677 49.6
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.4e-191 672.2 676 50.4
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.9e-191 671.0 714 48.5
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.7e-190 670.2 675 50.1
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.8e-190 669.1 685 49.5
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.8e-190 669.1 685 49.5
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 3.8e-190 669.1 674 50.1
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.4e-189 667.2 681 50.2
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.4e-189 666.4 676 49.3
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 3.2e-189 666.0 681 49.9
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 3.2e-189 666.0 679 48.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 9.3e-189 664.5 680 49.0
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.7e-188 662.9 685 49.1
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.8e-188 661.4 676 48.5
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.7e-187 660.2 691 47.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.3e-187 659.8 683 48.6
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 5.1e-187 658.7 679 50.1
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.1e-187 658.7 678 49.9
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 5.1e-187 658.7 675 49.2
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.9e-186 656.8 677 50.4
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 5.6e-186 655.2 672 48.5
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.8e-185 652.9 687 48.2
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.8e-184 650.2 687 48.2
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.8e-184 650.2 678 48.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.1e-184 649.4 675 50.1
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 9.0e-184 647.9 679 48.6
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.2e-183 647.5 679 48.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.0e-183 646.7 675 49.5
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 4.5e-183 645.6 676 50.4
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 7.6e-183 644.8 680 48.4
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.9e-182 642.9 683 47.6
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.9e-182 642.9 581 53.0
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.8e-182 642.5 682 47.2
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 4.9e-182 642.1 671 48.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 8.4e-182 641.3 677 47.6
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.1e-181 641.0 676 49.4
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.1e-181 641.0 627 51.2
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.4e-181 639.8 682 47.1
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.0e-179 634.4 683 47.4
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.3e-179 634.0 676 46.4
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.3e-179 633.3 690 48.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.3e-178 629.4 682 46.5
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.8e-176 623.6 693 47.0
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 9.0e-176 621.3 837 42.7
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.4e-175 619.4 594 52.0
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.3e-174 617.5 616 50.0
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 4.9e-174 615.5 731 44.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.9e-173 613.6 690 47.2
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 7.1e-173 611.7 645 48.2
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 7.9e-172 608.2 680 46.0
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-170 602.8 669 48.3
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 5.6e-170 602.1 681 47.4
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-166 591.3 724 45.7
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 5.5e-165 585.5 673 47.8
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.2e-164 584.3 665 46.9
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 4.6e-164 582.4 584 51.4
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 9.7e-162 574.7 732 44.1
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 3.4e-159 566.2 675 46.4
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 5.0e-158 562.4 678 44.8
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.0e-158 562.4 677 43.9
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.2e-157 559.3 685 43.5
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.8e-153 546.6 527 51.8
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 4.1e-152 542.7 687 45.0
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.3e-146 523.1 677 41.9
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.3e-142 511.1 534 47.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 4.2e-141 506.1 671 42.0
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 2.6e-138 496.9 674 42.7
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 6.3e-137 492.3 558 46.1
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 4.0e-123 446.4 426 48.8
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-119 433.0 339 60.8
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.0e-106 391.0 287 61.0
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.6e-103 381.3 371 50.9
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 5.6e-101 372.9 358 49.4
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.3e-94 351.7 214 71.5
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 9.5e-93 345.5 562 37.0
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 9.2e-88 328.9 571 35.6
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.5e-87 327.0 468 39.5
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 9.5e-85 318.9 311 48.6
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 5.8e-82 309.7 538 34.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 9.9e-82 308.9 395 41.3
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.1e-79 301.2 401 39.9
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 3.2e-48 197.6 162 63.0
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 4.6e-47 193.7 137 62.8
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 1.6e-44 185.3 158 57.6
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.1e-43 181.0 322 34.2
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.4e-42 177.6 128 60.9
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.9e-42 176.8 218 44.5
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 7.7e-42 176.4 233 42.5
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.0e-33 149.4 122 59.0
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 7.2e-32 143.3 392 26.3
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 2.2e-28 131.7 250 34.4
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-27 128.6 98 62.2
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-27 128.6 98 62.2
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-27 128.6 98 62.2
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 7.2e-24 116.7 183 38.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.7e-20 105.5 172 32.6
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 6.3e-20 103.6 265 30.9
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 7.0e-19 100.1 133 37.6
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 3.8e-17 94.4 254 28.0
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.5e-16 91.7 59 69.5
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 9.7e-13 79.7 93 44.1
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.8e-12 77.4 43 74.4
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.8e-12 77.4 43 74.4
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 1.4e-11 75.9 147 34.0
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.7e-10 71.6 54 64.8
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 2.7e-10 71.6 88 42.0
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-06 58.5 75 46.7
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.0e-06 57.8 118 34.7


User provided reference genes

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