Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 0.0e+00 1999.9 1017 100.0
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 0.0e+00 1322.4 874 76.9
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1127.9 1019 57.2
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1125.2 1017 57.7
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1113.6 1020 56.6
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1092.4 1020 55.8
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1091.3 1015 56.1
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1083.9 1019 56.3
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1080.5 1020 56.0
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1079.7 1022 55.6
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1078.5 1020 55.9
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 0.0e+00 1078.2 1019 57.4
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1077.8 1021 55.4
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1077.4 1022 55.5
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1075.8 1018 55.1
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1075.8 1025 56.6
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 7.0e-312 1073.9 1028 55.4
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 1.0e-310 1070.1 1022 55.2
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 1.0e-310 1070.1 1022 55.7
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 4.0e-310 1068.1 1005 55.8
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 9.0e-310 1067.0 1005 55.9
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 6.4e-308 1060.8 1026 54.3
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 2.7e-306 1055.4 1020 54.7
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 1.0e-305 1053.5 1008 55.4
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 1.0e-305 1053.5 1020 55.1
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 1.1e-304 1050.0 1015 54.7
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 3.3e-304 1048.5 1019 54.3
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 4.3e-304 1048.1 1017 54.9
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 7.4e-304 1047.3 1020 55.1
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 1.6e-303 1046.2 1019 54.1
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 1.6e-303 1046.2 1085 52.4
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 1.6e-303 1046.2 1020 54.9
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 3.7e-303 1045.0 1022 54.9
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 2.0e-301 1039.3 1010 53.7
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 5.8e-301 1037.7 997 54.9
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 1.9e-299 1032.7 1019 53.8
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 2.4e-299 1032.3 1019 53.7
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 1.6e-298 1029.6 1064 53.3
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 6.0e-298 1027.7 1019 54.2
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 7.9e-298 1027.3 1019 54.1
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 1.8e-297 1026.2 1025 53.2
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 5.1e-297 1024.6 1017 52.4
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 1.9e-296 1022.7 1031 53.6
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 1.6e-295 1019.6 1016 53.1
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 2.8e-295 1018.8 1018 53.1
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 6.2e-295 1017.7 1017 52.6
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 1.1e-294 1016.9 1016 53.2
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 1.4e-294 1016.5 1016 53.4
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 2.4e-294 1015.8 1019 52.4
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 3.1e-294 1015.4 1015 53.2
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 5.3e-294 1014.6 1020 52.7
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 3.4e-293 1011.9 1104 50.4
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 4.5e-293 1011.5 1018 53.4
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 5.8e-293 1011.1 1018 53.5
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 1.0e-292 1010.4 1014 52.9
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 2.9e-292 1008.8 1018 53.3
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 2.5e-291 1005.7 1015 53.4
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 2.5e-291 1005.7 1026 53.0
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 9.3e-291 1003.8 1021 52.3
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 2.7e-290 1002.3 1019 52.6
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 2.7e-290 1002.3 1027 53.6
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 6.0e-290 1001.1 1015 52.1
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 1.8e-289 999.6 1019 52.4
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 2.3e-289 999.2 1023 51.5
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 2.3e-289 999.2 1033 53.0
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 1.5e-288 996.5 1028 52.2
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 2.2e-287 992.6 1023 53.4
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 3.7e-287 991.9 1019 51.7
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 4.8e-287 991.5 1008 52.7
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 8.2e-287 990.7 1030 52.4
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 1.1e-286 990.3 1014 51.9
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 1.4e-286 989.9 1028 52.3
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 9.0e-286 987.3 1021 51.9
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 2.0e-285 986.1 1018 52.5
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 3.2e-283 978.8 1022 51.9
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 3.6e-282 975.3 1019 52.1
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 6.1e-282 974.5 1019 51.9
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 3.9e-281 971.8 1024 51.7
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 2.5e-280 969.1 1019 51.7
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 9.7e-280 967.2 1016 51.0
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 6.3e-279 964.5 1019 51.4
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 6.3e-279 964.5 1019 51.4
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 2.0e-277 959.5 804 62.8
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 7.2e-275 951.0 1029 50.9
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 7.4e-272 941.0 1005 51.6
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.3e-260 903.7 785 60.3
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 2.2e-247 859.8 978 48.6
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 2.0e-245 853.2 786 58.3
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 2.8e-234 816.2 693 61.9
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 8.6e-228 794.7 995 44.7
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 3.1e-225 786.2 1028 43.8
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.0e-224 783.5 616 64.8
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-217 760.4 1030 43.1
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 6.8e-217 758.4 598 65.4
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 4.8e-202 709.1 1012 42.0
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 5.3e-193 679.1 781 46.0
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.8e-180 637.5 1034 38.2
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 1.3e-178 631.3 759 45.5
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 3.8e-175 619.8 1052 37.4
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.3e-172 611.3 506 62.6
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.6e-170 604.4 506 61.5
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 1.7e-151 541.2 1017 33.9
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 1.9e-150 537.7 432 64.6
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 5.3e-145 519.6 457 60.6
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.0e-140 505.4 574 50.9
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 6.8e-140 502.7 530 54.0
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 2.2e-130 471.1 539 46.2
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.5e-126 458.4 424 54.7
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 4.9e-122 443.4 514 44.7
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 1.9e-118 431.4 1078 29.9
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 2.8e-117 427.6 514 43.8
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.9e-105 388.3 629 37.5
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 3.0e-103 380.9 465 44.7
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 4.1e-97 360.5 264 71.6
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.0e-95 354.4 237 73.8
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.8e-93 347.8 237 74.3
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.4e-89 335.5 538 38.7
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.0e-79 301.2 297 52.2
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 5.8e-75 287.0 427 39.3
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 8.7e-55 219.9 458 34.7
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.1e-54 219.5 318 36.8
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.7e-54 217.2 309 36.6
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 5.7e-54 217.2 391 38.9
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 1.6e-53 215.7 314 36.9
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 3.1e-52 211.5 275 44.0
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-50 206.1 395 35.2
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 1.5e-43 182.6 708 25.0
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 4.5e-43 181.0 109 78.9
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 2.5e-41 175.3 825 24.5
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 7.2e-41 173.7 162 59.3
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 7.2e-41 173.7 162 59.3
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-39 169.1 214 44.9
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 1.3e-37 162.9 749 24.2
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 3.8e-34 151.4 427 32.1
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 2.1e-32 145.6 423 31.0
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 7.5e-30 137.1 159 47.2
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-27 129.8 313 31.9
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 6.5e-26 124.0 271 32.8
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 1.2e-24 119.8 116 59.5
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 8.8e-23 113.6 82 70.7
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 4.4e-22 111.3 125 54.4
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 8.3e-21 107.1 89 56.2
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 4.5e-19 101.3 146 35.6
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 1.1e-17 96.7 76 65.8
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 2.1e-16 92.4 60 73.3
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 2.6e-14 85.5 158 37.3
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.8e-12 79.3 49 71.4
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 7.0e-12 77.4 51 64.7
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-11 76.3 105 42.9
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 2.3e-10 72.4 65 56.9
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 1.5e-09 69.7 46 69.6
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 1.6e-08 66.2 164 30.5
AL2G41090 Arabidopsis lyrata HOM05D002927 ORTHO05D003841 1.4e-07 63.2 298 24.2
Ah.01g020990 Amaranthus hybridus HOM05D002927 ORTHO05D003841 7.5e-06 57.4 260 25.0
Potri.001G178000 Populus trichocarpa HOM05D002927 ORTHO05D003841 9.8e-06 57.0 325 24.0


User provided reference genes

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