Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.2e-78 296.6 165 100.0
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 4.0e-42 175.3 123 79.7
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.8e-26 123.2 102 63.7
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.5e-25 120.2 89 69.7
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 3.4e-25 119.0 91 68.1
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 4.5e-25 118.6 102 66.7
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 5.8e-25 118.2 121 55.4
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 7.6e-25 117.9 105 61.9
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 7.6e-25 117.9 134 54.5
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.3e-24 117.1 94 67.0
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.2e-24 116.3 170 45.9
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 2.2e-24 116.3 94 67.0
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 3.8e-24 115.5 128 51.6
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 6.4e-24 114.8 92 65.2
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 8.4e-24 114.4 98 65.3
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 1.1e-23 114.0 96 62.5
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.1e-23 114.0 99 64.6
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.1e-23 114.0 91 64.8
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.4e-23 113.6 91 65.9
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.4e-23 113.6 101 60.4
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.4e-23 113.6 101 60.4
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.4e-23 113.6 92 63.0
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.9e-23 113.2 89 65.2
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 1.9e-23 113.2 106 60.4
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 2.4e-23 112.8 128 51.6
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 2.4e-23 112.8 83 68.7
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 3.2e-23 112.5 94 61.7
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 3.2e-23 112.5 144 49.3
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.2e-23 112.1 95 64.2
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 5.4e-23 111.7 120 53.3
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 5.4e-23 111.7 123 56.9
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 5.4e-23 111.7 92 62.0
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 7.1e-23 111.3 101 63.4
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 9.3e-23 110.9 89 64.0
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 9.3e-23 110.9 115 56.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 1.2e-22 110.5 95 61.1
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 1.6e-22 110.2 83 69.9
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.6e-22 110.2 145 45.5
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 2.1e-22 109.8 96 60.4
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.1e-22 109.8 105 55.2
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 2.7e-22 109.4 89 61.8
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 2.7e-22 109.4 120 51.7
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 2.7e-22 109.4 97 60.8
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 2.7e-22 109.4 97 60.8
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.7e-22 109.4 116 54.3
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 2.7e-22 109.4 109 56.0
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 3.5e-22 109.0 102 60.8
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 4.6e-22 108.6 90 60.0
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 4.6e-22 108.6 91 59.3
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.6e-22 108.6 99 58.6
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 4.6e-22 108.6 120 51.7
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.6e-22 108.6 116 53.4
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 4.6e-22 108.6 107 59.8
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 6.0e-22 108.2 92 58.7
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 6.0e-22 108.2 92 58.7
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 6.0e-22 108.2 92 58.7
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 6.0e-22 108.2 102 60.8
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 6.0e-22 108.2 86 61.6
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 6.0e-22 108.2 109 55.0
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 7.9e-22 107.8 95 64.2
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.3e-21 107.1 87 62.1
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.3e-21 107.1 87 62.1
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.3e-21 107.1 94 62.8
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.8e-21 106.7 92 57.6
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.8e-21 106.7 92 57.6
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.8e-21 106.7 92 57.6
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.8e-21 106.7 115 50.4
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 2.3e-21 106.3 98 58.2
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 2.3e-21 106.3 89 61.8
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 3.0e-21 105.9 123 50.4
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 3.0e-21 105.9 89 62.9
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 3.0e-21 105.9 78 67.9
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 3.9e-21 105.5 93 61.3
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 3.9e-21 105.5 123 49.6
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 3.9e-21 105.5 93 60.2
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 3.9e-21 105.5 135 48.1
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 3.9e-21 105.5 83 66.3
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.1e-21 105.1 81 67.9
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 5.1e-21 105.1 118 50.0
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 6.7e-21 104.8 109 54.1
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 6.7e-21 104.8 87 62.1
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 8.7e-21 104.4 107 53.3
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 8.7e-21 104.4 92 57.6
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 1.1e-20 104.0 102 54.9
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 1.1e-20 104.0 119 54.6
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.1e-20 104.0 104 54.8
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.1e-20 104.0 137 45.3
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.9e-20 103.2 75 70.7
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.9e-20 103.2 105 55.2
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.9e-20 103.2 94 57.4
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.5e-20 102.8 90 61.1
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.5e-20 102.8 100 57.0
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.5e-20 102.8 120 52.5
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 3.3e-20 102.4 155 43.2
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 3.3e-20 102.4 87 60.9
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 5.6e-20 101.7 153 43.1
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 7.4e-20 101.3 148 45.3
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.4e-20 101.3 148 45.3
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 9.6e-20 100.9 156 42.9
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 9.6e-20 100.9 146 44.5
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.3e-19 100.5 130 50.0
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 2.1e-19 99.8 101 51.5
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 6.2e-19 98.2 100 54.0
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.1e-18 97.4 78 62.8
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.1e-18 97.4 146 44.5
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 1.8e-18 96.7 76 67.1
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.8e-18 96.7 152 44.1
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.8e-18 96.7 157 42.7
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.1e-18 95.9 152 43.4
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 9.0e-18 94.4 147 43.5
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 1.5e-17 93.6 81 56.8
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.7e-16 90.1 150 42.7
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 2.2e-16 89.7 70 65.7
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 4.9e-16 88.6 143 43.4
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 4.9e-16 88.6 151 41.1
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 5.5e-15 85.1 162 37.0
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 8.7e-13 77.8 54 72.2
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.3e-11 73.9 105 38.1
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 6.9e-10 68.2 111 39.6
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 5.8e-09 65.1 57 63.2
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 7.6e-09 64.7 53 69.8
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 6.5e-08 61.6 83 37.3
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.9e-07 60.1 47 70.2
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.5e-07 59.7 52 55.8
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 7.9e-06 54.7 64 48.4


User provided reference genes

Program Settings