Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0320100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.2e-228 794.3 378 100.0
Os10g0137000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.2e-196 688.0 379 87.9
Os10g0136200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.8e-88 329.3 364 48.4
Zm00001eb346560 Zea mays HOM05D008694 ORTHO05D010635 6.7e-69 265.4 374 41.4
Os10g0137700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 5.0e-64 249.2 391 40.9
Os02g0249700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.6e-62 243.0 382 41.4
Os10g0136900 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 9.1e-58 228.4 190 60.0
Os10g0142500 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.5e-57 226.1 383 36.0
Os10g0145200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.9e-55 220.7 362 38.4
Zm00001eb285670 Zea mays HOM05D008694 ORTHO05D010635 2.7e-49 200.3 404 36.1
Os10g0145100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 7.3e-47 192.2 369 33.9
Os10g0145000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.7e-46 189.5 382 35.3
Os10g0188000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.3e-43 181.4 219 45.2
Os10g0138000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.9e-43 180.3 154 57.1
Os11g0166100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.0e-41 174.1 386 33.9
Os10g0155300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.9e-40 169.9 373 35.7
Os07g0120200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.5e-39 167.9 375 35.2
Os07g0120400 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.6e-38 164.5 374 34.5
Zm00001eb332480 Zea mays HOM05D008694 ORTHO05D010635 2.0e-36 157.5 364 33.8
Zm00001eb298860 Zea mays HOM05D008694 ORTHO05D010635 1.1e-34 151.8 377 32.6
Os07g0421000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.6e-33 147.9 372 32.3
Os07g0123000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.5e-31 140.6 379 30.1
Os10g0123200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.5e-31 140.6 125 60.0
Os07g0122900 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 9.5e-31 138.7 380 33.9
Os10g0139300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.3e-29 134.0 389 30.3
Zm00001eb302490 Zea mays HOM05D008694 ORTHO05D010635 2.0e-28 131.0 310 32.6
Os10g0136150 Oryza sativa ssp. japonica HOM05D008243 ORTHO05D017094 4.4e-28 129.8 202 36.1
Zm00001eb043870 Zea mays HOM05D008694 ORTHO05D010635 4.4e-28 129.8 373 30.8
Os01g0557400 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.2e-27 127.5 368 30.4
Zm00001eb028860 Zea mays HOM05D008694 ORTHO05D010635 3.7e-27 126.7 310 32.6
Zm00001eb043880 Zea mays HOM05D008694 ORTHO05D010635 9.2e-26 122.1 391 30.4
Os08g0299700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 5.2e-21 106.3 192 39.6
Zm00001eb299080 Zea mays HOM05D062505 ORTHO05D010635 1.5e-20 104.8 327 30.6
Os10g0144800 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.9e-19 99.8 401 26.4
Os10g0138300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.4e-18 97.4 244 29.5
Os01g0509900 Oryza sativa ssp. japonica HOM05D010111 ORTHO05D010635 7.8e-17 92.4 312 29.2
Os10g0158700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.2e-14 85.1 304 31.2
Zm00001eb299160 Zea mays HOM05D008694 ORTHO05D010635 2.4e-13 80.9 101 46.5
Zm00001eb299040 Zea mays HOM05D062505 ORTHO05D010635 3.1e-13 80.5 382 26.4
Os02g0294100 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D036983 3.8e-11 73.6 375 26.7
Os02g0288000 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D010635 6.4e-11 72.8 114 47.4
Glyma.07G187200 Glycine max HOM05D000007 ORTHO05D000017 1.1e-10 72.0 252 27.8
Os09g0324200 Oryza sativa ssp. japonica HOM05D015368 ORTHO05D023030 3.2e-10 70.5 185 30.8
Os10g0141600 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.2e-10 70.1 260 25.0
Os05g0147700 Oryza sativa ssp. japonica HOM05D010111 ORTHO05D010635 7.1e-10 69.3 200 33.0
CsaV3_5G004870 Cucumis sativus L. HOM05D000664 ORTHO05D000491 9.3e-10 68.9 252 29.0
Os10g0139600 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.2e-09 68.6 44 79.5
Os02g0288925 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D036983 1.6e-09 68.2 131 38.9
AUR62027655 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.5e-09 67.0 252 28.2
BcaB05g21790 Brassica carinata HOM05D007779 ORTHO05D009863 6.0e-09 66.2 382 23.0
CiPaw.07G037900 Carya illinoinensis HOM05D000007 ORTHO05D000017 1.0e-08 65.5 264 27.3
Glyma.10G117700 Glycine max HOM05D000007 ORTHO05D000017 1.3e-08 65.1 325 24.0
Os09g0341600 Oryza sativa ssp. japonica HOM05D015368 ORTHO05D299837 2.3e-08 64.3 305 24.3
PGSC0003DMG400040438 Solanum tuberosum HOM05D000664 ORTHO05D000491 2.3e-08 64.3 236 25.8
COL.COLO4_32999 Corchorus olitorius HOM05D000664 ORTHO05D000491 3.0e-08 63.9 255 26.7
Nitab4.5_0000413g0140 Nicotiana tabacum HOM05D000664 ORTHO05D000491 3.0e-08 63.9 235 26.4
Zm00001eb236980 Zea mays HOM05D017235 ORTHO05D036983 3.9e-08 63.5 113 42.5
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.1e-07 62.0 248 26.6
FAN09G2242 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-07 62.0 263 25.1
Os02g0287800 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D010635 1.9e-07 61.2 77 46.8
Zm00001eb323630 Zea mays HOM05D010111 ORTHO05D442090 1.9e-07 61.2 283 25.1
Aqoxy3G00361 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 4.3e-07 60.1 278 24.8
Zm00001eb161470 Zea mays HOM05D028964 ORTHO05D049742 4.3e-07 60.1 226 30.1
Nitab4.5_0000375g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 7.3e-07 59.3 273 25.3
Ca_16861_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 9.6e-07 58.9 254 24.4
FAN02G2534 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-06 58.5 280 25.4
Prupe.1G112700 Prunus persica HOM05D007162 ORTHO05D007631 1.3e-06 58.5 296 25.3
Lj5g0014558 Lotus japonicus HOM05D000007 ORTHO05D000017 1.6e-06 58.2 303 25.4
FAN16G2717 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.1e-06 57.8 247 25.5
Zm00001eb086820 Zea mays HOM05D010111 ORTHO05D049910 2.1e-06 57.8 115 37.4
CANSAT78G1184 Cannabis sativa HOM05D007162 ORTHO05D007631 3.6e-06 57.0 296 23.0
Os08g0299600 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.8e-06 56.6 198 28.3
Cc06_g22330 Coffea canephora HOM05D000664 ORTHO05D000491 6.2e-06 56.2 234 24.8
Zm00001eb229920 Zea mays HOM05D008694 ORTHO05D010635 6.2e-06 56.2 47 59.6
Zm00001eb323800 Zea mays HOM05D010111 ORTHO05D049854 6.2e-06 56.2 111 38.7
Ca_09436_v3 Cicer arietinum L. HOM05D007779 ORTHO05D009863 8.1e-06 55.8 386 22.3
Dinv33763 Davidia involucrata HOM05D000001 ORTHO05D000003 8.1e-06 55.8 262 24.4
Hma1.2p1_1883F.1_g306450 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 8.1e-06 55.8 107 37.4
RcHm_v2.0_Chr4g0388641 Rosa chinensis HOM05D000664 ORTHO05D000491 8.1e-06 55.8 217 26.3


User provided reference genes

Program Settings