Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.4e-246 855.9 440 100.0
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.5e-213 746.1 436 89.0
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 3.1e-166 589.0 434 67.7
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 5.3e-166 588.2 438 68.7
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.6e-165 585.9 438 68.9
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 7.6e-165 584.3 434 68.0
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 7.1e-163 577.8 434 66.1
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 2.7e-162 575.9 434 66.1
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 3.5e-162 575.5 436 66.7
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 3.5e-162 575.5 438 67.1
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 4.6e-162 575.1 438 66.9
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 5.1e-161 571.6 432 66.4
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 2.5e-160 569.3 438 66.7
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 3.3e-160 568.9 438 65.8
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 9.7e-160 567.4 436 66.7
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.3e-159 567.0 440 65.0
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.6e-159 566.6 436 66.1
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.6e-159 566.6 429 66.9
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 2.8e-159 565.8 437 65.7
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 4.8e-159 565.1 432 66.2
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.1e-158 563.9 433 64.7
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.1e-158 563.9 434 65.4
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.4e-158 563.5 434 64.7
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 1.2e-157 560.5 432 66.4
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.5e-157 560.1 438 66.2
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.5e-157 560.1 432 64.8
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 1.5e-157 560.1 438 64.8
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 1.5e-157 560.1 438 65.1
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 2.6e-157 559.3 435 66.4
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 2.6e-157 559.3 437 65.9
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.6e-157 559.3 432 65.5
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 3.4e-157 558.9 434 65.7
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 7.7e-157 557.8 432 65.5
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.0e-156 557.4 434 64.3
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.7e-156 556.6 432 65.3
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 1.7e-156 556.6 429 66.2
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 2.9e-156 555.8 462 63.0
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 5.0e-156 555.1 438 64.6
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.1e-155 553.9 438 63.7
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 2.5e-155 552.7 438 64.4
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 4.2e-155 552.0 434 64.3
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 7.2e-155 551.2 432 65.3
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 1.2e-154 550.4 436 64.2
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 3.6e-154 548.9 438 63.2
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 3.6e-154 548.9 434 65.4
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 4.6e-154 548.5 432 65.3
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.8e-153 546.6 433 65.1
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.8e-153 546.6 430 65.3
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 3.0e-153 545.8 439 64.2
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 3.9e-153 545.4 434 62.7
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 8.8e-153 544.3 438 63.7
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.1e-152 543.9 439 64.0
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.1e-152 543.9 432 65.3
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 2.0e-152 543.1 438 62.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 2.5e-152 542.7 428 64.7
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 3.3e-152 542.3 433 65.6
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 4.3e-152 542.0 438 63.5
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.3e-151 540.4 432 63.4
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 1.7e-151 540.0 474 61.0
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 6.3e-151 538.1 428 62.1
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 8.2e-151 537.7 437 61.8
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 8.2e-151 537.7 431 62.9
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 1.8e-150 536.6 435 63.4
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 3.1e-150 535.8 438 63.0
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 6.9e-150 534.6 436 64.2
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 6.9e-150 534.6 435 65.3
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 2.6e-149 532.7 436 63.8
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 3.4e-149 532.3 436 62.8
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 4.5e-149 531.9 434 63.6
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 1.0e-148 530.8 472 60.4
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.3e-148 530.4 438 61.4
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 2.2e-148 529.6 430 63.7
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 6.5e-148 528.1 417 65.5
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.5e-147 526.2 436 63.5
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 7.2e-147 524.6 449 62.4
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 2.1e-146 523.1 442 62.2
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 4.7e-146 521.9 473 58.4
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 6.1e-146 521.5 448 60.7
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 5.1e-145 518.5 417 64.0
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 3.3e-144 515.8 472 58.3
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.3e-143 513.8 430 61.4
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.5e-141 505.8 367 70.0
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 5.9e-141 505.0 519 53.6
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 8.0e-138 494.6 521 52.4
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.1e-134 484.2 422 59.7
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 5.3e-134 481.9 433 59.1
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 7.7e-133 478.0 433 58.4
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.5e-131 473.0 364 67.9
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 4.2e-131 472.2 436 59.4
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 4.2e-131 472.2 428 59.3
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 4.7e-130 468.8 378 64.0
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.2e-128 464.2 381 62.5
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.4e-126 457.2 440 55.5
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.3e-124 450.7 438 54.6
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.3e-124 450.7 728 39.0
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.4e-121 440.7 381 59.8
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 5.2e-121 438.7 381 59.6
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 8.3e-119 431.4 427 54.8
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 2.4e-118 429.9 368 62.5
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.2e-117 427.6 455 52.3
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 3.6e-114 416.0 431 50.3
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 1.0e-113 414.5 438 50.7
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 1.3e-108 397.5 343 61.5
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 4.3e-107 392.5 699 37.6
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 2.4e-102 376.7 338 60.1
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 2.0e-101 373.6 441 48.3
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 7.8e-101 371.7 300 64.0
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.5e-99 366.7 321 59.2
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 8.9e-97 358.2 285 63.9
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 2.7e-93 346.7 353 50.4
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 2.1e-82 310.5 220 72.3
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.3e-79 301.2 250 63.6
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 9.3e-70 268.5 219 64.8
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 3.3e-67 260.0 236 60.6
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 1.8e-65 254.2 433 35.8
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 3.8e-63 246.5 289 48.4
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.8e-60 237.7 161 72.7
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 9.6e-59 231.9 221 57.0
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.2e-54 216.9 134 78.4
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 4.3e-51 206.5 159 61.6
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 4.8e-50 203.0 139 72.7
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.1e-43 181.8 142 64.8
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.9e-38 164.5 437 30.7
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 2.7e-37 160.6 321 33.6
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.9e-31 140.6 149 52.3
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 1.4e-28 131.7 200 41.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 3.9e-28 130.2 193 41.5
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.1e-27 128.6 140 53.6
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 7.7e-24 115.9 113 49.6
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 5.3e-17 93.2 56 75.0
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.5e-14 85.1 145 43.4
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 1.9e-14 84.7 68 60.3
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 2.1e-13 81.3 78 53.8
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 1.0e-12 79.0 95 46.3
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 3.0e-12 77.4 68 57.4
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 9.8e-11 72.4 84 46.4
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 4.1e-09 67.0 42 78.6
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.0e-08 64.7 92 40.2
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 7.7e-08 62.8 45 66.7


User provided reference genes

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