Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 3.2e-31 138.7 126 100.0
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 3.4e-25 118.6 85 85.9
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 4.8e-19 98.2 48 93.8
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 5.4e-15 84.7 86 59.3
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 2.3e-13 79.3 48 79.2
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 2.3e-13 79.3 48 79.2
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 3.0e-13 79.0 48 79.2
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 5.1e-13 78.2 49 79.6
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 1.1e-12 77.0 44 84.1
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 2.5e-12 75.9 48 75.0
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 2.5e-12 75.9 48 75.0
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 3.3e-12 75.5 85 52.9
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 3.3e-12 75.5 45 77.8
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 3.3e-12 75.5 45 77.8
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 3.3e-12 75.5 45 77.8
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 4.3e-12 75.1 44 79.5
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 4.3e-12 75.1 48 75.0
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 5.6e-12 74.7 47 74.5
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 7.4e-12 74.3 50 74.0
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 7.4e-12 74.3 41 82.9
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 9.6e-12 73.9 45 73.3
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.3e-11 73.6 41 80.5
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.3e-11 73.6 41 80.5
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 1.3e-11 73.6 79 65.8
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 1.3e-11 73.6 79 65.8
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 1.6e-11 73.2 45 80.0
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 1.6e-11 73.2 42 83.3
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 1.6e-11 73.2 45 75.6
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.6e-11 73.2 45 75.6
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.6e-11 73.2 45 75.6
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 1.6e-11 73.2 39 82.1
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 1.6e-11 73.2 45 80.0
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 1.6e-11 73.2 45 80.0
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 2.1e-11 72.8 44 75.0
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 2.1e-11 72.8 81 51.9
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 2.8e-11 72.4 45 68.9
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.8e-11 72.4 79 51.9
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 2.8e-11 72.4 47 72.3
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 2.8e-11 72.4 41 78.0
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 3.6e-11 72.0 45 73.3
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 3.6e-11 72.0 45 73.3
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 3.6e-11 72.0 45 73.3
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 3.6e-11 72.0 45 73.3
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 3.6e-11 72.0 45 73.3
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 3.6e-11 72.0 45 75.6
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 3.6e-11 72.0 79 50.6
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 4.8e-11 71.6 38 84.2
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 4.8e-11 71.6 42 81.0
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 6.2e-11 71.2 47 74.5
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 6.2e-11 71.2 45 73.3
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 6.2e-11 71.2 47 70.2
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 6.2e-11 71.2 37 86.5
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 8.1e-11 70.9 48 68.8
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 1.1e-10 70.5 44 75.0
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 1.1e-10 70.5 38 84.2
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 1.1e-10 70.5 40 77.5
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 1.1e-10 70.5 40 77.5
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 1.4e-10 70.1 43 76.7
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 1.4e-10 70.1 38 78.9
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 1.8e-10 69.7 44 72.7
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 1.8e-10 69.7 44 72.7
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 2.4e-10 69.3 45 73.3
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 3.1e-10 68.9 37 81.1
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 4.0e-10 68.6 44 65.9
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 4.0e-10 68.6 45 71.1
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 5.3e-10 68.2 78 67.9
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 5.3e-10 68.2 78 67.9
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 5.3e-10 68.2 43 74.4
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 6.9e-10 67.8 43 72.1
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 6.9e-10 67.8 43 74.4
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 6.9e-10 67.8 48 66.7
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 6.9e-10 67.8 47 70.2
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 9.0e-10 67.4 48 66.7
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 9.0e-10 67.4 45 68.9
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 1.2e-09 67.0 44 72.7
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 1.5e-09 66.6 46 71.7
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 1.5e-09 66.6 44 70.5
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 1.5e-09 66.6 44 70.5
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 2.0e-09 66.2 44 70.5
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 2.0e-09 66.2 44 70.5
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 2.6e-09 65.9 79 72.2
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 2.6e-09 65.9 36 77.8
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 3.4e-09 65.5 37 73.0
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 3.4e-09 65.5 35 77.1
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 3.4e-09 65.5 36 77.8
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 3.4e-09 65.5 37 78.4
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 4.5e-09 65.1 37 73.0
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 4.5e-09 65.1 34 79.4
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 5.8e-09 64.7 38 73.7
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.3e-08 63.5 42 71.4
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 1.7e-08 63.2 37 73.0
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 2.9e-08 62.4 48 62.5
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 1.4e-07 60.1 34 76.5
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.2e-06 57.0 42 66.7
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 1.6e-06 56.6 46 65.2
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 2.1e-06 56.2 50 58.0
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 3.5e-06 55.5 41 58.5


User provided reference genes

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