Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1926.0 990 100.0
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1611.3 990 81.8
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1587.8 990 81.3
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1297.0 970 64.1
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1295.4 966 65.1
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1293.5 983 64.8
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1288.5 984 64.6
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1287.7 987 64.6
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1287.3 992 63.9
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1285.8 984 64.3
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1285.0 982 64.4
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1281.2 989 64.2
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1271.9 983 63.7
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1271.9 994 63.2
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1268.1 984 63.4
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1266.1 984 63.0
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1264.2 982 62.8
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1263.4 980 62.9
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1262.3 985 63.0
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1259.6 982 62.3
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1258.4 982 62.9
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1256.9 950 64.1
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1255.4 987 62.3
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1254.2 984 61.9
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1251.9 982 62.2
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1250.3 985 62.2
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1250.0 982 62.5
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1249.6 982 63.0
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1248.8 983 62.1
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1248.8 987 61.8
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1245.7 985 61.9
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1245.0 987 61.8
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1241.9 990 61.9
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1239.9 984 61.6
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1239.9 984 63.1
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1238.4 984 61.6
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1238.0 991 62.2
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1237.2 980 61.7
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1236.1 985 61.6
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1236.1 980 61.9
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1235.7 977 61.6
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1234.6 985 61.6
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1234.2 984 62.5
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1233.8 992 61.4
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1233.8 985 61.8
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1233.0 982 61.3
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1231.1 992 61.2
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1230.3 964 62.6
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1229.5 984 61.7
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1228.8 983 62.5
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1228.8 964 62.4
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1228.8 982 61.6
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1225.7 984 61.4
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1225.3 982 60.9
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1223.8 983 62.3
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1223.4 985 61.1
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1223.0 983 62.4
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1223.0 984 62.4
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1222.2 991 61.4
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1221.5 984 61.0
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1221.5 1005 60.6
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1220.3 964 62.1
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1219.5 1081 57.2
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1218.0 982 60.5
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1217.2 982 61.2
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1216.8 982 60.8
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1216.8 979 61.2
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1216.4 983 60.8
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1214.1 991 59.4
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1213.4 982 60.4
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1213.4 964 61.2
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1213.4 983 60.7
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1212.2 982 60.6
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1211.4 985 60.8
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1211.4 991 60.0
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1211.1 982 61.1
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1207.6 964 59.8
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1205.7 983 61.1
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1203.7 984 59.8
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1203.7 997 59.7
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1202.2 984 59.6
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1201.4 984 59.2
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1200.7 984 60.0
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1200.7 954 60.9
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1200.7 964 59.4
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1200.3 985 59.0
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1199.5 967 59.5
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1198.7 991 58.8
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1196.4 982 59.8
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1196.4 983 59.1
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1196.0 992 59.9
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1192.9 980 60.5
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1191.8 985 59.8
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1190.3 985 59.7
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1190.3 984 59.8
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1188.7 1004 58.8
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1188.3 1013 60.1
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1182.2 982 60.6
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1182.2 983 59.1
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1180.2 982 60.5
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1180.2 982 58.2
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1175.2 982 57.8
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1174.8 1020 57.1
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1174.5 983 58.1
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1173.7 1011 58.3
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1172.9 985 57.9
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1172.1 988 57.6
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1171.4 953 59.4
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1170.6 998 59.1
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1167.5 997 59.1
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1166.8 970 58.8
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1157.5 1062 54.7
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1157.1 902 63.2
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1143.6 997 57.7
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1125.9 982 57.8
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1107.4 969 57.4
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1090.5 982 56.2
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1088.9 1013 55.6
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1086.2 984 55.9
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.3e-308 1063.1 903 58.0
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 3.7e-308 1061.6 952 56.3
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 1.4e-307 1059.7 847 61.4
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 8.5e-297 1023.8 845 59.8
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 3.7e-284 981.9 881 56.2
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 2.1e-279 966.1 842 57.4
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.3e-276 956.8 998 50.9
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 6.5e-273 944.5 1016 48.9
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 3.7e-244 849.0 958 48.1
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.8e-223 778.9 541 68.8
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 7.9e-218 761.5 658 56.5
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 5.6e-216 755.4 685 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 2.6e-205 719.9 888 43.0
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 5.9e-189 665.6 529 62.8
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.6e-186 657.5 658 48.6
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.0e-161 573.2 362 76.0
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.9e-155 554.3 808 41.5
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 5.2e-153 546.2 923 37.9
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 3.0e-132 477.2 296 77.7
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 5.6e-131 473.0 296 76.7
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-127 460.3 850 35.1
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.0e-124 450.7 282 77.3
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 8.4e-119 432.6 419 53.0
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 2.2e-111 407.9 1008 31.4
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 8.7e-108 396.0 1065 30.3
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 6.0e-101 373.2 256 69.5
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 5.8e-88 330.1 691 36.0
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.3e-81 307.0 332 48.5
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 1.9e-78 298.5 430 40.0
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 1.6e-69 268.9 363 42.1
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 7.9e-69 266.5 366 38.8
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 3.0e-60 238.0 319 41.1
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 4.5e-56 224.2 251 48.6
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.7e-53 214.9 248 44.4
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 3.0e-52 211.5 147 73.5
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 9.7e-51 206.5 185 54.6
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 1.1e-49 203.0 129 76.7
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 1.2e-48 199.5 125 78.4
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 5.9e-48 197.2 144 63.9
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.3e-44 185.3 125 75.2
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 8.8e-44 183.3 105 80.0
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.6e-43 181.8 1045 22.2
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 5.7e-35 154.1 200 47.0
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 1.1e-33 149.8 104 64.4
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 1.1e-33 149.8 104 64.4
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 4.1e-33 147.9 104 64.4
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 7.5e-27 127.1 85 71.8
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 1.7e-18 99.4 121 52.1
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 1.7e-18 99.4 121 52.1
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 2.2e-18 99.0 77 58.4
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 8.3e-18 97.1 62 74.2
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 7.0e-17 94.0 81 48.1
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 9.2e-17 93.6 63 71.4
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 7.8e-16 90.5 52 75.0
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 3.9e-15 88.2 60 66.7
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.5e-14 86.3 48 79.2
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.6e-13 82.8 77 51.9
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 1.6e-13 82.8 88 54.5
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 3.6e-13 81.6 77 51.9
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 8.1e-13 80.5 45 75.6
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 1.1e-12 80.1 70 58.6
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 4.0e-12 78.2 137 37.2
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 2.4e-09 68.9 121 38.0
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 1.1e-06 60.1 37 78.4


User provided reference genes

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