Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 2098.2 1117 100.0
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1747.6 1122 80.8
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1375.5 1047 66.4
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1364.4 1080 64.2
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1341.6 1066 64.0
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1326.6 1051 63.9
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1320.4 1057 63.0
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1313.1 1046 63.6
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1309.7 1043 63.3
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1301.2 1060 62.4
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1300.8 1070 62.2
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1300.0 1044 61.0
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1296.2 1050 62.7
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1288.1 1060 62.8
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1283.1 1040 61.7
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1280.8 1010 64.2
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1274.6 1046 63.3
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1274.6 1060 61.5
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1262.7 1039 61.8
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1260.4 1039 60.5
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1257.3 1048 61.2
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1257.3 1057 61.8
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1255.4 1039 61.5
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1253.8 1058 60.8
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1251.1 1055 60.8
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1248.4 1046 61.6
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1245.0 1094 57.9
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1244.6 1118 58.5
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1244.6 1065 61.3
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1243.4 1156 56.4
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1240.7 1046 61.5
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1240.3 1040 60.8
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1237.2 1064 59.8
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1228.4 1101 58.3
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1228.0 1036 59.1
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1227.2 1072 58.5
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1227.2 1060 59.4
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1225.3 1119 56.8
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1225.3 1048 60.9
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1224.9 1064 60.1
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1219.9 1069 58.6
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1217.2 1055 60.5
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1215.3 1090 58.0
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1210.7 1038 58.8
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1207.6 1057 58.4
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1206.8 1030 59.3
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1203.0 1010 59.4
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1203.0 920 64.5
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1201.8 1036 58.3
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1199.9 1042 59.5
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1199.5 1030 59.2
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1196.4 1051 59.7
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1193.7 1054 57.8
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1191.4 1064 56.6
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1189.1 1112 54.9
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1188.3 1116 56.1
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1187.9 1036 58.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1187.6 1054 59.6
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1187.6 1116 55.6
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1185.6 1044 57.8
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1185.6 1043 57.7
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1185.6 1053 59.2
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1185.2 1043 57.1
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1181.8 1034 57.8
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1181.0 1038 57.8
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1181.0 1029 57.8
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1179.5 1054 59.0
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1177.9 1043 57.7
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1177.9 970 60.0
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1177.5 1030 58.1
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1176.4 1054 59.4
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1174.8 1030 57.6
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1174.5 1039 58.6
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1173.7 1029 57.5
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1171.4 1044 58.6
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1168.3 1031 57.4
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1168.3 1123 55.7
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1166.0 1054 55.7
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1161.4 1029 56.9
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1161.4 1029 56.9
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1160.2 1041 56.9
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1159.8 1052 57.7
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1155.6 1047 56.0
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1152.1 1064 57.0
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1152.1 1047 58.7
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1151.0 1048 57.7
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1144.8 1068 55.1
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1144.8 1000 56.5
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1140.9 1047 55.2
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1127.9 1039 57.3
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1124.4 1047 57.3
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1123.6 1040 56.6
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1122.8 1059 57.5
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1117.8 1057 56.8
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1097.8 1002 56.0
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1095.1 1002 55.9
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1094.7 1055 55.0
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1092.8 923 58.9
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1092.4 1076 53.0
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1080.9 833 63.5
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 7.6e-312 1073.9 1015 54.2
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 1.7e-306 1056.2 1034 54.5
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.1e-299 1032.7 830 61.4
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 2.1e-296 1022.7 1001 51.2
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 1.7e-285 986.5 911 58.4
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 3.9e-274 948.7 957 50.5
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 8.2e-272 941.0 748 62.2
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.3e-269 933.7 997 47.3
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.8e-263 913.3 962 47.4
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 5.3e-263 911.8 1036 48.1
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-258 896.3 680 64.3
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 3.0e-250 869.4 1005 45.8
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 2.5e-244 849.7 783 56.3
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.5e-209 734.2 1023 40.4
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 7.8e-206 721.8 678 57.1
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.1e-187 660.6 465 68.8
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.1e-187 660.6 465 68.8
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.2e-182 644.8 578 54.5
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.3e-128 465.3 318 70.4
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 7.3e-79 300.1 400 43.2
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 4.0e-61 241.1 1055 23.6
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 5.8e-52 210.7 201 55.2
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 3.4e-44 184.9 165 55.2
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 9.3e-42 176.8 143 60.8
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.3e-40 172.2 207 45.9
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 8.7e-40 170.2 171 50.3
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 6.5e-35 154.1 557 23.9
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 8.5e-35 153.7 372 30.1
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 7.2e-34 150.6 210 42.9
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.7e-31 141.0 176 44.9
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.1e-29 136.7 183 41.5
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.3e-21 107.8 119 49.6
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 1.5e-20 106.3 130 44.6
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 1.7e-19 102.8 94 52.1
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 7.4e-15 87.4 248 27.0
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.8e-14 85.5 108 43.5
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.3e-11 76.6 72 58.3
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 3.2e-10 72.0 68 55.9
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 4.0e-08 65.1 105 36.2
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 4.0e-08 65.1 53 58.5
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 6.7e-08 64.3 51 49.0
Thecc.06G205800 Theobroma cacao HOM05D004682 ORTHO05D408344 7.5e-07 60.8 57 61.4
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.8e-06 58.2 77 44.2


User provided reference genes

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