Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0146100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D298887 0.0e+00 1130.9 615 100.0
Os05g0145700 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D301298 9.8e-126 454.9 433 58.7
Os05g0146900 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D297647 6.4e-77 292.7 424 39.9
Os03g0221100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293029 1.4e-71 275.0 296 48.6
Os03g0663100 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D296914 3.9e-66 256.9 417 36.7
Os03g0661800 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D299399 4.1e-47 193.7 348 35.3
Os08g0144400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293916 1.9e-36 158.3 414 29.2
Os05g0161400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D299027 2.0e-33 148.3 359 28.4
Os05g0157600 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D295619 1.8e-31 141.7 287 30.7
Os05g0158400 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D301236 1.2e-30 139.0 304 29.6
Os05g0158200 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D298992 5.9e-30 136.7 287 30.3
Os05g0160600 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D294322 5.0e-29 133.7 258 32.6
Os07g0231900 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D298415 3.1e-23 114.4 333 30.3
Os08g0145600 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D293310 3.1e-23 114.4 193 34.2
Os01g0278600 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.4e-15 89.0 286 26.9
DCAR_026566 Daucus carota HOM05D012205 ORTHO05D014781 4.1e-15 87.4 336 28.6
Duzib114G0358 Durio zibethinus HOM05D006716 ORTHO05D008396 5.9e-14 83.6 352 25.3
Os04g0307800 Oryza sativa ssp. japonica HOM05D011092 ORTHO05D294181 5.9e-14 83.6 111 45.0
CDE09G0722 Ceratophyllum demersum HOM05D005214 ORTHO05D005861 1.0e-13 82.8 300 28.7
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 1.7e-13 82.0 322 27.6
DCAR_016238 Daucus carota HOM05D012205 ORTHO05D014781 1.1e-12 79.3 273 27.8
TPR.G40231 Trifolium pratense HOM05D006716 ORTHO05D008396 1.9e-12 78.6 335 26.9
DCAR_015677 Daucus carota HOM05D012205 ORTHO05D014781 4.2e-12 77.4 287 28.2
Os09g0436700 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 4.2e-12 77.4 365 25.2
TPR.G36640 Trifolium pratense HOM05D006716 ORTHO05D008396 4.2e-12 77.4 335 26.3
TWI12G0218 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 5.5e-12 77.0 287 26.8
DCAR_019182 Daucus carota HOM05D012205 ORTHO05D014781 9.4e-12 76.3 267 28.1
Peaxi162Scf00663g00027 Petunia axillaris HOM05D006716 ORTHO05D008396 9.4e-12 76.3 347 25.4
MBI07_g30867_MAGBIO Magnolia biondii HOM05D005214 ORTHO05D005861 2.1e-11 75.1 297 28.3
Aqoxy4G01949 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 2.7e-11 74.7 359 26.2
Os09g0436400 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 2.7e-11 74.7 304 25.7
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 2.7e-11 74.7 119 37.8
EL10Ac7g17971 Beta vulgaris HOM05D012205 ORTHO05D014781 3.6e-11 74.3 310 28.1
FAN02G3954 Fragaria x ananassa HOM05D005214 ORTHO05D005861 3.6e-11 74.3 266 27.8
Nitab4.5_0001339g0090 Nicotiana tabacum HOM05D006716 ORTHO05D008396 4.7e-11 73.9 322 25.8
Aa31LG11G9400 Aethionema arabicum HOM05D005214 ORTHO05D005861 6.1e-11 73.6 293 28.0
CSS0050127 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 6.1e-11 73.6 297 27.9
CANSAT54G2509 Cannabis sativa HOM05D005214 ORTHO05D005861 6.1e-11 73.6 303 25.4
Duzib128G1190 Durio zibethinus HOM05D005214 ORTHO05D005861 6.1e-11 73.6 300 27.3
Mapoly0047s0084 Marchantia polymorpha HOM05D005214 ORTHO05D005861 6.1e-11 73.6 305 25.9
PSO541G2582 Papaver somniferum HOM05D005214 ORTHO05D005861 6.1e-11 73.6 281 26.3
TWI12G1447 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 6.1e-11 73.6 305 27.2
MSTRG.27985 Avicennia marina HOM05D005214 ORTHO05D005861 8.0e-11 73.2 273 26.7
Nn8g40789 Nelumbo nucifera HOM05D005214 ORTHO05D005861 8.0e-11 73.2 298 28.5
Os03g0608800 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.0e-10 72.8 351 24.8
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 1.0e-10 72.8 322 26.7
vmacro12393 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.0e-10 72.8 306 26.1
Manes.08G119000 Manihot esculenta HOM05D005214 ORTHO05D005861 1.8e-10 72.0 280 26.8
Aqoxy2G03015 Aquilegia oxysepala HOM05D005214 ORTHO05D005861 3.0e-10 71.2 300 26.7
Cfa006617 Carpinus fangiana HOM05D005214 ORTHO05D005861 3.0e-10 71.2 288 26.0
DCAR_016243 Daucus carota HOM05D012205 ORTHO05D014781 3.0e-10 71.2 275 24.0
FvH4_6g06420 Fragaria vesca HOM05D005214 ORTHO05D005861 3.0e-10 71.2 266 27.4
FvH4_7g05300 Fragaria vesca HOM05D005214 ORTHO05D005861 3.0e-10 71.2 251 27.9
Manes.S095408 Manihot esculenta HOM05D006716 ORTHO05D008396 3.0e-10 71.2 310 27.4
Medtr7g113170 Medicago truncatula HOM05D005214 ORTHO05D005861 3.0e-10 71.2 281 25.6
Peaxi162Scf00226g00716 Petunia axillaris HOM05D006716 ORTHO05D008396 3.0e-10 71.2 315 26.3
ECA236G2130 Erigeron canadensis HOM05D005214 ORTHO05D005861 4.0e-10 70.9 273 26.7
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 4.0e-10 70.9 315 25.1
QL03p021693 Quercus lobata HOM05D005214 ORTHO05D005861 4.0e-10 70.9 280 26.4
BcaNung04541 Brassica carinata HOM05D005214 ORTHO05D005861 5.2e-10 70.5 280 26.8
AUR62029714 Chenopodium quinoa HOM05D012205 ORTHO05D014781 5.2e-10 70.5 286 28.0
Gohir.A08G209100 Gossypium hirsutum HOM05D005214 ORTHO05D005861 5.2e-10 70.5 269 25.7
Lj1g0009363 Lotus japonicus HOM05D005214 ORTHO05D005861 5.2e-10 70.5 286 24.5
Gohir.D08G226000 Gossypium hirsutum HOM05D005214 ORTHO05D005861 6.8e-10 70.1 266 25.6
Gorai.004G240000 Gossypium raimondii HOM05D005214 ORTHO05D005861 6.8e-10 70.1 269 25.7
RcHm_v2.0_Chr3g0455481 Rosa chinensis HOM05D005214 ORTHO05D005861 6.8e-10 70.1 283 26.9
GSVIVG01031122001 Vitis vinifera HOM05D005214 ORTHO05D005861 6.8e-10 70.1 300 26.3
EL10Ac4g09934 Beta vulgaris HOM05D005214 ORTHO05D005861 8.8e-10 69.7 299 26.8
CSS0000343 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 8.8e-10 69.7 271 26.2
Ca_05806_v3 Cicer arietinum L. HOM05D005214 ORTHO05D005861 8.8e-10 69.7 274 25.2
FAN05G5708 Fragaria x ananassa HOM05D005214 ORTHO05D005861 8.8e-10 69.7 272 27.2
Sabra13G0021100 Salix brachista HOM05D005214 ORTHO05D005861 8.8e-10 69.7 285 26.7
arahy.Tifrunner.gnm1.ann1.0P9F65 Arachis hypogaea HOM05D005214 ORTHO05D005861 1.2e-09 69.3 296 27.0
CSS0021432 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 1.2e-09 69.3 289 25.6
CARHR186180 Cardamine hirsuta HOM05D005214 ORTHO05D005861 1.2e-09 69.3 275 26.5
Cc00_g10460 Coffea canephora HOM05D005214 ORTHO05D005861 1.2e-09 69.3 273 26.7
Lalb_Chr18g0045711 Lupinus albus HOM05D005214 ORTHO05D005861 1.2e-09 69.3 256 25.4
Os11g0246600 Oryza sativa ssp. japonica HOM05D005214 ORTHO05D005861 1.2e-09 69.3 290 28.6
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 1.2e-09 69.3 315 25.4
ATR0743G060 Amborella trichopoda HOM05D005214 ORTHO05D005861 1.5e-09 68.9 286 27.3
AL6G39370 Arabidopsis lyrata HOM05D005214 ORTHO05D005861 1.5e-09 68.9 300 26.0
QL03p011667 Quercus lobata HOM05D005214 ORTHO05D005861 1.5e-09 68.9 280 26.4
unitig_699.g19247 Utricularia gibba HOM05D005214 ORTHO05D005861 1.5e-09 68.9 281 24.6
Actinidia05683 Actinidia chinensis HOM05D005214 ORTHO05D005861 2.0e-09 68.6 273 26.7
Eucgr.H04504 Eucalyptus grandis HOM05D005214 ORTHO05D005861 2.0e-09 68.6 280 26.1
Potri.013G018300 Populus trichocarpa HOM05D005214 ORTHO05D005861 2.0e-09 68.6 280 26.8
arahy.Tifrunner.gnm1.ann1.P1V9IM Arachis hypogaea HOM05D005214 ORTHO05D005861 2.6e-09 68.2 296 26.7
BcaNung04538 Brassica carinata HOM05D005214 ORTHO05D005861 2.6e-09 68.2 280 26.1
Haze_04156 Corylus avellana HOM05D005214 ORTHO05D007291 2.6e-09 68.2 278 25.5
Sp2g20820 Schrenkiella parvula HOM05D005214 ORTHO05D005861 2.6e-09 68.2 280 27.1
Carub.0006s2493 Capsella rubella HOM05D005214 ORTHO05D005861 3.4e-09 67.8 300 26.0
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 3.4e-09 67.8 313 26.2
Hund07090 Selenicereus undatus HOM05D005214 ORTHO05D005861 3.4e-09 67.8 283 27.9
Cpa.g.sc48.81 Carica papaya HOM05D005214 ORTHO05D005861 4.4e-09 67.4 290 25.5
CBR_g39175 Chara braunii HOM05D005214 ORTHO05D005861 4.4e-09 67.4 335 25.1
Dinv40313 Davidia involucrata HOM05D005214 ORTHO05D005861 4.4e-09 67.4 298 24.8
Lsat_1_v5_gn_9_87421 Lactuca sativa HOM05D005214 ORTHO05D005861 4.4e-09 67.4 275 26.9
vmacro04966 Vaccinium macrocarpon HOM05D005214 ORTHO05D005861 4.4e-09 67.4 302 24.8
DCAR_004702 Daucus carota HOM05D012205 ORTHO05D014781 7.5e-09 66.6 281 25.3
HanXRQChr11g0339491 Helianthus annuus HOM05D005214 ORTHO05D005861 7.5e-09 66.6 300 25.7
COL.COLO4_10501 Corchorus olitorius HOM05D005214 ORTHO05D005861 9.8e-09 66.2 283 25.8
Lj9A119G25 Lonicera japonica HOM05D005214 ORTHO05D005861 9.8e-09 66.2 280 26.4
AT5G27660 Arabidopsis thaliana HOM05D005214 ORTHO05D005861 1.3e-08 65.9 298 24.8
DCAR_022150 Daucus carota HOM05D005214 ORTHO05D005861 1.3e-08 65.9 280 25.7
Migut.N02017 Erythranthe guttata HOM05D005214 ORTHO05D005861 1.3e-08 65.9 298 25.5
FAN14G2055 Fragaria x ananassa HOM05D005214 ORTHO05D005861 1.3e-08 65.9 227 25.6
Thecc.05G311500 Theobroma cacao HOM05D005214 ORTHO05D005861 1.3e-08 65.9 278 24.8
A06p37390 Brassica napus HOM05D005214 ORTHO05D005861 1.7e-08 65.5 272 26.5
C07p40960 Brassica napus HOM05D005214 ORTHO05D005861 1.7e-08 65.5 272 26.5
BolC7t44627H Brassica oleracea HOM05D005214 ORTHO05D005861 1.7e-08 65.5 272 26.5
BraA06t26663Z Brassica rapa HOM05D005214 ORTHO05D005861 1.7e-08 65.5 272 26.5
FvH4_6g06410 Fragaria vesca HOM05D005214 ORTHO05D005861 1.7e-08 65.5 227 25.6
Nitab4.5_0002144g0030 Nicotiana tabacum HOM05D005214 ORTHO05D005861 1.7e-08 65.5 283 25.4
Peaxi162Scf00038g00840 Petunia axillaris HOM05D006716 ORTHO05D008396 1.7e-08 65.5 282 26.2
Thhalv10004245m.g Eutrema salsugineum HOM05D005214 ORTHO05D005861 2.2e-08 65.1 273 26.4
AUR62000783 Chenopodium quinoa HOM05D005214 ORTHO05D005861 2.8e-08 64.7 301 25.6
Haze_04157 Corylus avellana HOM05D005214 ORTHO05D005861 2.8e-08 64.7 265 24.9
Migut.N01980 Erythranthe guttata HOM05D005214 ORTHO05D005861 4.8e-08 63.9 298 25.2
Thecc.05G311600 Theobroma cacao HOM05D005214 ORTHO05D005861 4.8e-08 63.9 298 24.8
THA.LOC104802800 Tarenaya hassleriana HOM05D005214 ORTHO05D005861 6.3e-08 63.5 280 25.4
TWI12G0439 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 8.3e-08 63.2 275 24.7
Hma1.2p1_0003F.1_g003620 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 1.1e-07 62.8 160 28.1
Hma1.2p1_1212F.1_g267370 Hydrangea macrophylla HOM05D005214 ORTHO05D005861 1.1e-07 62.8 300 24.7
Os09g0436300 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.1e-07 62.8 272 23.5
Potri.018G001550 Populus trichocarpa HOM05D006716 ORTHO05D008396 1.1e-07 62.8 309 24.6
Prupe.6G322200 Prunus persica HOM05D005214 ORTHO05D005861 1.1e-07 62.8 301 24.3
Ciclev10001167m.g Citrus clementina HOM05D005214 ORTHO05D005861 1.4e-07 62.4 264 25.0
Eucgr.L01166 Eucalyptus grandis HOM05D005214 ORTHO05D005861 1.4e-07 62.4 128 26.6
TPR.G33205 Trifolium pratense HOM05D005214 ORTHO05D005861 1.4e-07 62.4 275 24.4
PSO017G6103 Papaver somniferum HOM05D006716 ORTHO05D008396 1.8e-07 62.0 123 33.3
SMO364G0425 Selaginella moellendorffii HOM05D005214 ORTHO05D005861 1.8e-07 62.0 278 25.5
CiPaw.07G020400 Carya illinoinensis HOM05D005214 ORTHO05D005861 3.1e-07 61.2 280 25.4
Psat0s545g0120 Pisum sativum HOM05D005214 ORTHO05D005861 4.1e-07 60.8 228 23.7
CAN.G619.10 Capsicum annuum HOM05D005214 ORTHO05D005861 5.4e-07 60.5 283 24.7
Ah.06g189700 Amaranthus hybridus HOM05D005214 ORTHO05D005861 7.0e-07 60.1 295 27.1
Ah.10g035290 Amaranthus hybridus HOM05D006716 ORTHO05D008396 7.0e-07 60.1 134 30.6
PSO478G1238 Papaver somniferum HOM05D006716 ORTHO05D008396 7.0e-07 60.1 233 27.0
CAN.G497.65 Capsicum annuum HOM05D006716 ORTHO05D008396 9.1e-07 59.7 306 27.1
AUR62005185 Chenopodium quinoa HOM05D005214 ORTHO05D005861 1.6e-06 58.9 225 24.9
MD04G1201900 Malus domestica HOM05D005214 ORTHO05D005861 1.6e-06 58.9 268 24.3
Nitab4.5_0000524g0010 Nicotiana tabacum HOM05D005214 ORTHO05D005861 1.6e-06 58.9 223 24.2
Duzib114G0505 Durio zibethinus HOM05D006716 ORTHO05D008396 2.0e-06 58.5 299 25.8
SGA_v2.0_scaffold80G25806 Striga asiatica HOM05D005214 ORTHO05D005861 2.7e-06 58.2 131 26.7
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 3.5e-06 57.8 113 34.5
CAN.G497.60 Capsicum annuum HOM05D006716 ORTHO05D008396 3.5e-06 57.8 141 31.2
Medtr5g464730 Medicago truncatula HOM05D006716 ORTHO05D008396 3.5e-06 57.8 307 23.1
Ah.04g150360 Amaranthus hybridus HOM05D012205 ORTHO05D014781 4.5e-06 57.4 227 27.8
CSS0009954 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 5.9e-06 57.0 268 27.2
MD12G1215600 Malus domestica HOM05D005214 ORTHO05D005861 7.7e-06 56.6 301 23.9
Rhsim01G0092600 Rhododendron simsii HOM05D006716 ORTHO05D008396 7.7e-06 56.6 279 26.9


User provided reference genes

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