Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 6.4e-146 520.8 271 100.0
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 2.9e-45 186.4 176 48.9
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 4.9e-37 159.1 166 44.6
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 2.3e-34 150.2 218 38.5
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 8.6e-34 148.3 159 44.0
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 8.6e-34 148.3 218 38.5
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 1.5e-33 147.5 154 43.5
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 1.5e-33 147.5 150 42.7
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.9e-33 147.1 161 41.6
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 3.3e-33 146.4 140 44.3
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 7.3e-33 145.2 151 43.0
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 7.3e-33 145.2 143 44.1
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.6e-32 144.1 180 40.6
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 2.1e-32 143.7 154 44.2
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 3.6e-32 142.9 158 44.9
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 4.7e-32 142.5 150 44.7
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 8.1e-32 141.7 154 42.9
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.1e-31 141.4 154 40.9
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.1e-31 141.4 152 43.4
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.4e-31 141.0 139 45.3
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.8e-31 140.6 156 41.7
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 2.3e-31 140.2 160 43.8
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 3.1e-31 139.8 157 42.7
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 3.1e-31 139.8 132 45.5
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 6.8e-31 138.7 159 42.8
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 8.9e-31 138.3 166 41.6
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 1.5e-30 137.5 155 42.6
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 2.0e-30 137.1 165 41.2
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 2.0e-30 137.1 166 41.0
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 3.4e-30 136.3 157 38.2
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 5.8e-30 135.6 154 39.0
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 5.8e-30 135.6 162 42.0
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 1.3e-29 134.4 161 42.9
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.3e-29 134.4 150 40.7
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-29 134.0 193 36.3
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 1.7e-29 134.0 216 35.6
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.7e-29 134.0 170 39.4
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 2.2e-29 133.7 157 40.1
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 2.2e-29 133.7 220 35.9
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 2.9e-29 133.3 168 40.5
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.9e-29 132.5 158 40.5
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 4.9e-29 132.5 193 35.8
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 6.4e-29 132.1 142 44.4
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 8.3e-29 131.7 153 41.2
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 1.1e-28 131.3 142 40.1
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 1.4e-28 131.0 235 33.6
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 1.4e-28 131.0 195 32.8
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.4e-28 130.2 154 40.9
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 2.4e-28 130.2 142 41.5
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 3.2e-28 129.8 164 39.6
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 4.1e-28 129.4 152 38.2
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 4.1e-28 129.4 220 34.1
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 7.1e-28 128.6 148 38.5
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 7.1e-28 128.6 158 41.8
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 7.1e-28 128.6 142 40.8
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 9.2e-28 128.3 154 41.6
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 9.2e-28 128.3 164 38.4
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 9.2e-28 128.3 141 41.1
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.2e-27 127.9 147 40.8
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.2e-27 127.9 147 40.8
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.2e-27 127.9 154 39.6
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 2.1e-27 127.1 150 40.0
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 2.7e-27 126.7 133 41.4
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 7.8e-27 125.2 212 33.0
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.0e-26 124.8 168 39.9
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.7e-26 124.0 136 41.9
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.7e-26 124.0 212 33.0
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 2.3e-26 123.6 149 38.9
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 3.0e-26 123.2 178 34.3
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.0e-26 123.2 142 40.8
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 3.0e-26 123.2 202 34.2
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 3.9e-26 122.9 183 34.4
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.9e-26 122.9 143 42.7
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 5.1e-26 122.5 143 37.1
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 6.6e-26 122.1 241 34.0
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 6.6e-26 122.1 143 42.0
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 8.6e-26 121.7 226 31.4
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.5e-25 120.9 143 41.3
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 1.9e-25 120.6 133 41.4
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.9e-25 120.6 135 39.3
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.9e-25 120.6 135 39.3
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.3e-25 119.8 154 39.0
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 4.3e-25 119.4 135 38.5
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 9.5e-25 118.2 169 36.7
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 9.5e-25 118.2 222 32.4
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 3.6e-24 116.3 143 36.4
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 6.2e-24 115.5 156 34.6
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 8.1e-24 115.2 138 37.7
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 8.1e-24 115.2 140 43.6
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 1.1e-23 114.8 157 38.9
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.4e-23 114.4 140 37.1
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 3.1e-23 113.2 200 32.5
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 3.1e-23 113.2 149 36.9
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 5.2e-23 112.5 244 31.1
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 1.5e-22 110.9 150 40.0
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.0e-22 110.5 177 35.0
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 2.6e-22 110.2 163 35.6
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 5.8e-22 109.0 147 35.4
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 7.6e-22 108.6 143 40.6
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.6e-22 108.6 166 35.5
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 7.6e-22 108.6 155 36.8
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 9.9e-22 108.2 163 35.6
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.3e-21 107.8 140 39.3
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 2.2e-21 107.1 263 28.9
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.9e-21 106.7 169 33.7
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 3.8e-21 106.3 229 32.3
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 8.4e-21 105.1 160 35.0
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 8.4e-21 105.1 97 46.4
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.1e-20 104.8 126 38.9
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 1.1e-20 104.8 133 36.1
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 1.4e-20 104.4 164 34.1
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.4e-20 104.4 195 32.3
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.4e-20 104.4 164 34.1
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.4e-20 104.4 164 34.1
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.4e-20 104.4 88 52.3
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 1.9e-20 104.0 163 35.0
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 1.9e-20 104.0 169 34.9
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.4e-20 103.6 160 35.6
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 3.2e-20 103.2 165 33.9
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 5.4e-20 102.4 97 47.4
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 7.1e-20 102.1 158 35.4
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 7.1e-20 102.1 157 35.0
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 9.2e-20 101.7 164 34.1
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.1e-19 100.5 164 31.7
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 2.7e-19 100.1 169 30.8
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 7.8e-19 98.6 77 53.2
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 7.8e-19 98.6 122 36.9
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 2.3e-18 97.1 137 35.8
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.3e-18 97.1 139 36.0
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 3.9e-18 96.3 148 37.8
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 3.9e-18 96.3 148 37.8
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 6.6e-18 95.5 145 38.6
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 8.7e-18 95.1 152 38.8
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 8.7e-18 95.1 152 38.8
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 8.7e-18 95.1 138 38.4
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 1.1e-17 94.7 143 33.6
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.9e-17 94.0 91 45.1
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.2e-16 91.3 125 35.2
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 4.7e-16 89.4 158 34.8
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 4.7e-16 89.4 140 35.0
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 6.2e-16 89.0 141 36.2
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 6.2e-16 89.0 100 38.0
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.1e-15 88.2 139 36.7
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 1.1e-15 88.2 161 33.5
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.4e-15 87.8 142 35.2
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 9.0e-15 85.1 120 33.3
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.2e-14 84.7 177 31.1
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.5e-14 84.3 138 37.0
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.7e-13 80.9 72 47.2
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.9e-12 77.4 135 31.9
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.2e-11 74.7 147 29.9
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 1.5e-09 67.8 138 29.7
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 5.6e-09 65.9 59 47.5
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.6e-08 64.3 67 41.8
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 4.8e-08 62.8 176 26.7
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 1.1e-07 61.6 41 51.2
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.2e-06 58.2 111 31.5
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 2.0e-06 57.4 52 44.2
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 2.0e-06 57.4 52 44.2


User provided reference genes

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