Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 6.9e-35 150.2 82 100.0
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 1.2e-31 139.4 64 93.8
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 1.3e-30 136.0 64 92.2
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 2.4e-27 125.2 61 90.2
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 5.3e-27 124.0 63 82.5
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 2.0e-26 122.1 64 79.7
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 5.8e-26 120.6 61 85.2
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 5.8e-26 120.6 61 85.2
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 5.8e-26 120.6 61 85.2
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 5.8e-26 120.6 61 85.2
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 9.9e-26 119.8 62 79.0
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 9.9e-26 119.8 62 80.6
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 2.9e-25 118.2 62 82.3
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 2.9e-25 118.2 63 77.8
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 2.9e-25 118.2 62 79.0
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 2.9e-25 118.2 62 79.0
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 4.9e-25 117.5 62 79.0
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 6.4e-25 117.1 62 79.0
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 6.4e-25 117.1 62 79.0
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 8.4e-25 116.7 64 71.9
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 8.4e-25 116.7 62 80.6
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 8.4e-25 116.7 62 79.0
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.1e-24 116.3 62 77.4
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.1e-24 116.3 62 77.4
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 1.4e-24 115.9 63 76.2
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 1.4e-24 115.9 63 76.2
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 1.4e-24 115.9 64 78.1
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 1.9e-24 115.5 61 80.3
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.4e-24 115.2 62 77.4
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 3.2e-24 114.8 64 71.9
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 3.2e-24 114.8 60 80.0
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 4.2e-24 114.4 63 76.2
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 5.4e-24 114.0 61 78.7
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 5.4e-24 114.0 61 78.7
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 5.4e-24 114.0 62 74.2
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 7.1e-24 113.6 61 77.0
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 7.1e-24 113.6 64 73.4
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 9.3e-24 113.2 60 80.0
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 1.2e-23 112.8 62 80.6
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 2.1e-23 112.1 60 80.0
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 2.7e-23 111.7 62 74.2
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 2.7e-23 111.7 61 75.4
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 2.7e-23 111.7 61 73.8
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 2.7e-23 111.7 65 72.3
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.5e-23 111.3 63 71.4
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.5e-23 111.3 63 71.4
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 4.6e-23 110.9 62 79.0
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 4.6e-23 110.9 64 70.3
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 7.9e-23 110.2 61 73.8
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 7.9e-23 110.2 64 70.3
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 1.0e-22 109.8 64 73.4
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.3e-22 109.4 63 71.4
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 1.3e-22 109.4 65 69.2
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 1.3e-22 109.4 61 78.7
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 1.3e-22 109.4 60 76.7
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 1.3e-22 109.4 63 74.6
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 1.3e-22 109.4 61 70.5
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 1.8e-22 109.0 60 75.0
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 1.8e-22 109.0 61 77.0
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.8e-22 109.0 60 76.7
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 2.3e-22 108.6 63 69.8
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 2.3e-22 108.6 65 67.7
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 2.3e-22 108.6 65 72.3
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 6.7e-22 107.1 65 69.2
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 8.7e-22 106.7 60 73.3
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 1.1e-21 106.3 60 73.3
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.1e-21 106.3 66 68.2
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 2.5e-21 105.1 60 73.3
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 3.3e-21 104.8 60 71.7
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 3.3e-21 104.8 59 72.9
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 3.3e-21 104.8 59 72.9
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 3.3e-21 104.8 60 71.7
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 3.3e-21 104.8 59 72.9
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 3.3e-21 104.8 60 71.7
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 3.3e-21 104.8 59 72.9
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 3.3e-21 104.8 60 71.7
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 3.3e-21 104.8 59 72.9
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 3.3e-21 104.8 59 72.9
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 3.3e-21 104.8 60 73.3
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 4.3e-21 104.4 57 73.7
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 5.6e-21 104.0 57 73.7
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 5.6e-21 104.0 57 73.7
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 5.6e-21 104.0 62 71.0
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 5.6e-21 104.0 57 73.7
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 5.6e-21 104.0 64 70.3
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 5.6e-21 104.0 64 70.3
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 7.4e-21 103.6 58 70.7
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 9.6e-21 103.2 59 71.2
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 9.6e-21 103.2 61 73.8
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 1.3e-20 102.8 65 67.7
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 4.8e-20 100.9 58 72.4
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 2.4e-19 98.6 58 69.0
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 6.9e-19 97.1 60 68.3
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 5.8e-18 94.0 45 77.8
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 1.7e-17 92.4 62 66.1
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 1.1e-16 89.7 52 75.0
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 1.9e-16 89.0 61 62.3
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 4.2e-16 87.8 49 77.6
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 7.1e-16 87.0 50 76.0
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 7.1e-16 87.0 53 75.5
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 9.3e-16 86.7 60 60.0
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 9.3e-16 86.7 60 61.7
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 9.3e-16 86.7 49 77.6
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 1.2e-15 86.3 50 72.0
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 6.0e-15 84.0 49 71.4
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 2.3e-14 82.0 48 68.8
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.1e-13 79.7 57 59.6
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 2.5e-13 78.6 45 71.1
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 9.6e-13 76.6 52 69.2
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 1.3e-12 76.3 56 58.9
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 1.6e-12 75.9 49 67.3
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.1e-11 73.2 57 52.6
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 3.4e-10 68.2 52 67.3
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 2.9e-09 65.1 36 77.8
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 5.0e-09 64.3 36 77.8
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 1.9e-08 62.4 49 59.2
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 4.2e-08 61.2 40 62.5
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 9.3e-08 60.1 36 75.0
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 1.6e-07 59.3 28 78.6
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 2.7e-07 58.5 37 75.7
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 4.6e-07 57.8 35 71.4
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 4.6e-07 57.8 35 71.4
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 7.9e-07 57.0 35 71.4
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 2.3e-06 55.5 37 67.6
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 6.7e-06 53.9 33 60.6


User provided reference genes

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