Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0115500 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D037178 1.6e-157 559.3 272 100.0
Os05g0345700 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D037178 4.4e-94 348.6 273 64.8
Zm00001eb355600 Zea mays HOM05D009723 ORTHO05D037178 6.1e-80 301.6 272 57.7
Zm00001eb375960 Zea mays HOM05D009723 ORTHO05D014671 2.4e-28 130.2 289 37.7
Zm00001eb271340 Zea mays HOM05D009723 ORTHO05D014671 5.4e-28 129.0 284 36.3
Zm00001eb271380 Zea mays HOM05D009723 ORTHO05D014671 1.0e-26 124.8 284 35.6
Zm00001eb271330 Zea mays HOM05D009723 ORTHO05D014671 1.7e-26 124.0 282 35.1
Zm00001eb271360 Zea mays HOM05D009723 ORTHO05D014671 1.7e-26 124.0 282 35.8
Zm00001eb376010 Zea mays HOM05D009723 ORTHO05D014671 7.3e-25 118.6 285 35.1
Os08g0164300 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D300131 3.1e-23 113.2 291 33.7
Zm00001eb055580 Zea mays HOM05D009723 ORTHO05D445506 2.4e-20 103.6 296 30.4
Zm00001eb172340 Zea mays HOM05D009723 ORTHO05D014671 9.3e-20 101.7 298 30.5
Zm00001eb373770 Zea mays HOM05D009723 ORTHO05D014671 2.1e-19 100.5 289 32.2
Zm00001eb375550 Zea mays HOM05D009723 ORTHO05D014671 3.5e-19 99.8 288 35.4
Zm00001eb172310 Zea mays HOM05D009723 ORTHO05D014671 1.1e-17 94.7 292 31.5
Os06g0161800 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D014671 4.8e-16 89.4 276 30.8
Os08g0164000 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D298143 4.0e-15 86.3 254 31.5
PSO591G0295 Papaver somniferum HOM05D001102 ORTHO05D001018 2.0e-14 84.0 282 28.7
CARHR024800 Cardamine hirsuta HOM05D001102 ORTHO05D001018 3.4e-14 83.2 296 28.4
A07p13590 Brassica napus HOM05D001102 ORTHO05D001018 4.5e-14 82.8 295 26.4
PSO832G0214 Papaver somniferum HOM05D001102 ORTHO05D001018 1.3e-13 81.3 282 28.4
Rhsim12G0055000 Rhododendron simsii HOM05D001102 ORTHO05D001018 1.7e-13 80.9 311 28.9
Os06g0161900 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D014671 1.4e-12 77.8 278 30.9
Zm00001eb061210 Zea mays HOM05D001102 ORTHO05D001018 7.1e-12 75.5 268 28.4
CSS0006171 Camellia sinensis var. sinensis HOM05D001102 ORTHO05D001018 1.2e-11 74.7 299 29.1
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 7.9e-11 72.0 201 29.4
BcaC06g35092 Brassica carinata HOM05D001102 ORTHO05D021602 1.3e-10 71.2 201 29.4
Oeu013608.2 Olea europaea HOM05D001102 ORTHO05D001018 1.3e-10 71.2 304 26.0
SGA_v2.0_scaffold87G26979 Striga asiatica HOM05D001102 ORTHO05D001018 1.3e-10 71.2 296 26.7
VMungo1383G1009 Vigna mungo HOM05D001102 ORTHO05D001018 3.0e-10 70.1 293 24.6
Atru.chr11.1878 Acer truncatum HOM05D001102 ORTHO05D001018 3.9e-10 69.7 303 26.7
A07p13330 Brassica napus HOM05D001102 ORTHO05D021602 3.9e-10 69.7 201 28.9
PGR119G0833 Punica granatum HOM05D001102 ORTHO05D001018 5.1e-10 69.3 297 26.6
Sed0004693 Sechium edule HOM05D001102 ORTHO05D001018 5.1e-10 69.3 281 29.2
AUR62026284 Chenopodium quinoa HOM05D001102 ORTHO05D001018 6.7e-10 68.9 283 25.8
Hma1.2p1_0265F.1_g106480 Hydrangea macrophylla HOM05D001102 ORTHO05D001018 6.7e-10 68.9 298 27.5
CARHR062980 Cardamine hirsuta HOM05D001102 ORTHO05D001018 1.1e-09 68.2 153 32.7
Oeu033523.1 Olea europaea HOM05D001102 ORTHO05D001018 1.1e-09 68.2 292 27.4
Nn4g23005 Nelumbo nucifera HOM05D001102 ORTHO05D001018 1.9e-09 67.4 295 25.4
Sabra10G0029600 Salix brachista HOM05D001102 ORTHO05D001018 1.9e-09 67.4 288 25.7
MELO3C012051.2 Cucumis melo HOM05D001102 ORTHO05D001018 2.5e-09 67.0 294 25.9
CsaV3_5G032170 Cucumis sativus L. HOM05D001102 ORTHO05D001018 2.5e-09 67.0 294 25.9
Zm00001eb212710 Zea mays HOM05D001102 ORTHO05D001018 2.5e-09 67.0 329 27.1
Sp2g04840 Schrenkiella parvula HOM05D001102 ORTHO05D001018 3.3e-09 66.6 294 27.6
C02p27060 Brassica napus HOM05D001102 ORTHO05D001018 4.3e-09 66.2 153 32.7
C07p19940 Brassica napus HOM05D001102 ORTHO05D021602 4.3e-09 66.2 201 28.9
BolC7t42513H Brassica oleracea HOM05D001102 ORTHO05D021602 4.3e-09 66.2 201 28.9
CSS0000032 Camellia sinensis var. sinensis HOM05D001102 ORTHO05D001018 4.3e-09 66.2 293 27.0
Phvul.008G044200 Phaseolus vulgaris HOM05D001102 ORTHO05D001018 4.3e-09 66.2 302 25.8
Lsat_1_v5_gn_3_49941 Lactuca sativa HOM05D001102 ORTHO05D001018 5.6e-09 65.9 164 35.4
BcaC03g15142 Brassica carinata HOM05D001102 ORTHO05D001018 7.4e-09 65.5 151 32.5
Ciclev10031206m.g Citrus clementina HOM05D001102 ORTHO05D001018 7.4e-09 65.5 310 25.5
TAR371G1099 Trochodendron aralioides HOM05D001102 ORTHO05D001018 7.4e-09 65.5 305 23.9
SEGI_31900 Sequoiadendron giganteum HOM05D001102 ORTHO05D001018 9.6e-09 65.1 328 26.2
BcaB03g14767 Brassica carinata HOM05D001102 ORTHO05D001018 1.6e-08 64.3 188 28.7
ClCG05G024730 Citrullus lanatus HOM05D001102 ORTHO05D001018 1.6e-08 64.3 292 25.0
Gorai.012G121500 Gossypium raimondii HOM05D001102 ORTHO05D001018 1.6e-08 64.3 302 24.2
A02p16220 Brassica napus HOM05D001102 ORTHO05D001018 2.1e-08 63.9 153 31.4
BraA02t06682Z Brassica rapa HOM05D001102 ORTHO05D001018 2.1e-08 63.9 153 31.4
Ca_00222_v3 Cicer arietinum L. HOM05D001102 ORTHO05D001018 2.8e-08 63.5 321 25.5
vmacro01223 Vaccinium macrocarpon HOM05D001102 ORTHO05D001018 2.8e-08 63.5 300 25.7
Dinv34187 Davidia involucrata HOM05D001102 ORTHO05D001018 3.7e-08 63.2 306 26.1
vmacro01222 Vaccinium macrocarpon HOM05D001102 ORTHO05D001018 3.7e-08 63.2 308 25.6
MSTRG.13396 Avicennia marina HOM05D001102 ORTHO05D001018 6.2e-08 62.4 299 25.8
PSO478G4471 Papaver somniferum HOM05D001102 ORTHO05D001018 6.2e-08 62.4 320 23.4
Sabra08G0147400 Salix brachista HOM05D001102 ORTHO05D001018 8.1e-08 62.0 308 25.6
THA.LOC104825599 Tarenaya hassleriana HOM05D001102 ORTHO05D001018 1.1e-07 61.6 296 25.3
TPR.G19607 Trifolium pratense HOM05D001102 ORTHO05D001018 1.1e-07 61.6 296 26.0
Carub.0002s1660 Capsella rubella HOM05D001102 ORTHO05D001018 1.8e-07 60.8 153 32.0
Migut.E00122 Erythranthe guttata HOM05D001102 ORTHO05D001018 1.8e-07 60.8 288 24.7
PGR102G2543 Punica granatum HOM05D001102 ORTHO05D001018 1.8e-07 60.8 162 30.9
Sp5g25010 Schrenkiella parvula HOM05D001102 ORTHO05D001018 3.1e-07 60.1 153 30.7
BcaC08g46438 Brassica carinata HOM05D001102 ORTHO05D001018 4.0e-07 59.7 188 28.2
C06p43750 Brassica napus HOM05D001102 ORTHO05D001018 4.0e-07 59.7 188 28.2
BolC6t39447H Brassica oleracea HOM05D001102 ORTHO05D001018 4.0e-07 59.7 188 28.2
BraA07t31205Z Brassica rapa HOM05D001102 ORTHO05D001018 5.3e-07 59.3 188 27.7
Rhsim12G0054900 Rhododendron simsii HOM05D001102 ORTHO05D001018 9.0e-07 58.5 296 24.7
Phvul.003G071100 Phaseolus vulgaris HOM05D001102 ORTHO05D001018 1.5e-06 57.8 169 32.0
Glyma.02G024200 Glycine max HOM05D001102 ORTHO05D001018 2.0e-06 57.4 167 31.7
Solyc02g087580.3 Solanum lycopersicum HOM05D001102 ORTHO05D001018 2.0e-06 57.4 158 30.4
Sopen02g032340 Solanum pennellii HOM05D001102 ORTHO05D001018 2.0e-06 57.4 158 30.4
A07p36330 Brassica napus HOM05D001102 ORTHO05D001018 2.6e-06 57.0 172 27.9
PGSC0003DMG400001307 Solanum tuberosum HOM05D001102 ORTHO05D001018 2.6e-06 57.0 158 29.7
CiPaw.05G141700 Carya illinoinensis HOM05D001102 ORTHO05D001018 3.4e-06 56.6 164 32.3
COL.COLO4_36204 Corchorus olitorius HOM05D001102 ORTHO05D001018 5.8e-06 55.8 296 24.0
Psat1g209640 Pisum sativum HOM05D001102 ORTHO05D001018 7.6e-06 55.5 330 26.4
Glyma.01G040400 Glycine max HOM05D001102 ORTHO05D001018 1.0e-05 55.1 167 29.9
Nn3g17101 Nelumbo nucifera HOM05D001102 ORTHO05D001018 1.0e-05 55.1 190 31.1
PSO161G0023 Papaver somniferum HOM05D001102 ORTHO05D001018 1.0e-05 55.1 158 27.8


User provided reference genes

Program Settings