Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 3.7e-67 258.1 129 100.0
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 3.7e-59 231.5 129 90.7
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 2.0e-52 209.1 128 82.0
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 5.7e-52 207.6 125 80.0
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 7.4e-52 207.2 125 80.0
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 9.7e-52 206.8 127 80.3
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 4.8e-51 204.5 127 78.0
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 4.8e-51 204.5 127 78.0
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 77.2
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 8.2e-51 203.8 127 77.2
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 79.5
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 76.4
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.4e-50 203.0 129 77.5
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.8e-50 202.6 127 78.7
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.1e-50 201.8 129 76.7
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 3.1e-50 201.8 127 78.0
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 3.1e-50 201.8 127 76.4
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 76.4
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 5.3e-50 201.1 127 77.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 7.0e-50 200.7 127 75.6
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 1.6e-49 199.5 127 76.4
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 78.0
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 78.0
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 78.0
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 78.0
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 78.0
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 77.2
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 76.4
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 2.6e-49 198.7 127 78.0
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.6e-49 198.7 127 77.2
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.6e-49 198.7 127 76.4
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.6e-49 198.7 127 74.8
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.5e-49 198.4 125 77.6
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 3.5e-49 198.4 127 77.2
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.5e-49 198.4 127 75.6
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 3.5e-49 198.4 125 76.8
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 4.5e-49 198.0 127 74.8
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 4.5e-49 198.0 129 76.7
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 4.5e-49 198.0 129 76.7
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 4.5e-49 198.0 127 74.8
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 4.5e-49 198.0 123 78.0
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 5.9e-49 197.6 127 76.4
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 5.9e-49 197.6 127 76.4
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 5.9e-49 197.6 125 75.2
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 7.7e-49 197.2 125 76.8
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 7.7e-49 197.2 127 77.2
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.0e-48 196.8 125 75.2
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 76.4
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 77.2
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 1.3e-48 196.4 124 78.2
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 1.3e-48 196.4 127 77.2
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.7e-48 196.1 124 77.4
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.7e-48 196.1 127 76.4
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 2.2e-48 195.7 124 76.6
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 2.2e-48 195.7 125 77.6
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 2.2e-48 195.7 127 74.0
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 2.9e-48 195.3 127 76.4
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 2.9e-48 195.3 127 75.6
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 2.9e-48 195.3 127 74.8
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 2.9e-48 195.3 127 75.6
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.8e-48 194.9 127 74.0
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 3.8e-48 194.9 128 76.6
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 6.5e-48 194.1 127 74.0
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.5e-48 193.7 127 74.0
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 8.5e-48 193.7 127 74.0
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 8.5e-48 193.7 128 74.2
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.1e-47 193.4 128 75.8
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.9e-47 192.6 127 74.8
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 2.5e-47 192.2 124 75.0
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 2.5e-47 192.2 125 74.4
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 2.5e-47 192.2 126 73.8
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 2.5e-47 192.2 124 74.2
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 2.5e-47 192.2 124 74.2
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 4.2e-47 191.4 124 76.6
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 5.5e-47 191.0 128 73.4
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 5.5e-47 191.0 127 73.2
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.2e-47 190.7 124 75.0
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.2e-47 190.7 124 74.2
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 7.2e-47 190.7 129 72.9
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 9.4e-47 190.3 124 75.0
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.2e-46 189.9 125 74.4
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.6e-46 189.5 127 74.0
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.6e-46 189.5 127 74.0
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.6e-46 189.5 127 74.0
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.6e-46 189.5 127 74.0
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 1.6e-46 189.5 129 75.2
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.6e-46 189.5 119 75.6
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 2.7e-46 188.7 125 74.4
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 6.1e-46 187.6 118 77.1
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.1e-46 187.6 127 73.2
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 6.1e-46 187.6 129 71.3
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 8.0e-46 187.2 118 77.1
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 8.0e-46 187.2 124 72.6
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.0e-45 186.8 127 73.2
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.3e-45 185.7 127 70.9
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 3.0e-45 185.3 124 72.6
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 3.0e-45 185.3 127 70.1
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 3.0e-45 185.3 124 71.0
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 6.7e-45 184.1 106 83.0
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 6.7e-45 184.1 124 73.4
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 8.8e-45 183.7 127 70.9
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 8.8e-45 183.7 124 71.0
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 8.8e-45 183.7 124 70.2
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.3e-44 181.8 124 71.8
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.3e-44 181.8 127 71.7
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.3e-44 181.8 125 71.2
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 7.5e-44 180.6 124 71.0
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.3e-43 179.9 128 68.8
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.3e-43 179.9 123 70.7
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.2e-43 179.1 125 69.6
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 3.7e-43 178.3 124 69.4
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.2e-41 173.3 124 73.4
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 2.7e-41 172.2 108 75.9
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 2.1e-38 162.5 167 53.3
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 8.8e-37 157.1 105 75.2
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 4.1e-34 148.3 87 82.8
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.6e-33 146.4 82 84.1
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 2.6e-28 129.0 74 83.8
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 2.8e-27 125.6 82 72.0
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.1e-26 123.6 98 61.2
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.8e-26 122.9 76 76.3
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 1.2e-25 120.2 89 66.3
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 3.5e-25 118.6 88 62.5
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 6.1e-22 107.8 61 85.2
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 6.8e-21 104.4 67 71.6
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.7e-20 101.3 57 86.0
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 7.5e-20 100.9 67 71.6
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 9.2e-18 94.0 127 46.5
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.6e-17 93.2 116 55.2
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 8.6e-16 87.4 51 80.4
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 2.1e-14 82.8 81 50.6
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 2.0e-12 76.3 82 46.3
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 7.3e-07 57.8 49 67.3
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 7.3e-07 57.8 49 67.3
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 9.5e-07 57.4 49 65.3
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.2e-06 57.0 40 62.5


User provided reference genes

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