Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0111300 Oryza sativa ssp. japonica HOM05D024798 ORTHO05D002012 9.0e-30 133.3 75 100.0
Zm00001eb355770 Zea mays HOM05D024798 ORTHO05D002012 1.3e-12 76.3 73 67.1
Os01g0974200 Oryza sativa ssp. japonica HOM05D024798 ORTHO05D002012 1.6e-10 69.3 77 71.4
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 1.8e-09 65.9 78 60.3
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 8.8e-09 63.5 77 55.8
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 1.5e-08 62.8 77 61.0
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 1.9e-08 62.4 78 60.3
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 1.9e-08 62.4 78 60.3
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.5e-08 62.0 75 60.0
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 2.5e-08 62.0 75 60.0
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 4.3e-08 61.2 75 60.0
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 5.7e-08 60.8 76 59.2
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 9.7e-08 60.1 74 59.5
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 9.7e-08 60.1 76 59.2
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 1.7e-07 59.3 78 55.1
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.2e-07 58.9 77 58.4
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.2e-07 58.9 76 57.9
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.8e-07 58.5 75 57.3
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 3.7e-07 58.2 75 56.0
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 3.7e-07 58.2 75 56.0
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 3.7e-07 58.2 75 56.0
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 3.7e-07 58.2 75 56.0
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.8e-07 57.8 78 59.0
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 6.3e-07 57.4 76 56.6
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 6.3e-07 57.4 77 41.6
PSO151G0128 Papaver somniferum HOM05D002160 ORTHO05D002012 6.3e-07 57.4 73 57.5
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 6.3e-07 57.4 77 55.8
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 6.3e-07 57.4 75 56.0
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 6.3e-07 57.4 77 55.8
PSO339G1859 Papaver somniferum HOM05D002160 ORTHO05D002012 8.2e-07 57.0 73 54.8
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 8.2e-07 57.0 76 56.6
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 1.1e-06 56.6 76 59.2
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 1.1e-06 56.6 77 58.4
PGSC0003DMG401008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.1e-06 56.6 72 58.3
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.4e-06 56.2 78 59.0
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.4e-06 56.2 78 57.7
Zm00001eb266820 Zea mays HOM05D024798 ORTHO05D444400 1.8e-06 55.8 49 61.2
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.4e-06 55.5 76 53.9
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.4e-06 55.5 76 42.1
Zm00001eb266840 Zea mays HOM05D024798 ORTHO05D444073 2.4e-06 55.5 76 53.9
CSS0020810 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 3.1e-06 55.1 67 61.2
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 3.1e-06 55.1 76 57.9
PSO339G1421 Papaver somniferum HOM05D002160 ORTHO05D002012 3.1e-06 55.1 73 56.2
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.1e-06 54.7 77 48.1
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 5.3e-06 54.3 78 52.6
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 5.3e-06 54.3 78 52.6
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 6.9e-06 53.9 77 54.5
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 6.9e-06 53.9 78 55.1
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 9.1e-06 53.5 77 54.5
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 9.1e-06 53.5 79 55.7


User provided reference genes

Program Settings