Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0100016 Oryza sativa ssp. japonica HOM05D005243 ORTHO05D006670 1.3e-56 223.8 215 100.0
Zm00001eb366040 Zea mays HOM05D005243 ORTHO05D006670 5.6e-12 75.5 43 83.7
vmacro00940 Vaccinium macrocarpon HOM05D005243 ORTHO05D006670 3.6e-11 72.8 48 70.8
Cc10_g08660 Coffea canephora HOM05D005243 ORTHO05D006670 1.4e-10 70.9 47 72.3
Dinv22107 Davidia involucrata HOM05D005243 ORTHO05D006670 2.4e-10 70.1 55 63.6
Peaxi162Scf00078g00625 Petunia axillaris HOM05D005243 ORTHO05D006670 2.4e-10 70.1 49 75.5
Rhsim12G0003000 Rhododendron simsii HOM05D005243 ORTHO05D006670 2.4e-10 70.1 48 68.8
Sabra19G0083700 Salix brachista HOM05D005243 ORTHO05D006670 4.0e-10 69.3 46 71.7
Aqoxy5G00838 Aquilegia oxysepala HOM05D005243 ORTHO05D006670 6.9e-10 68.6 47 68.1
MSTRG.1596 Avicennia marina HOM05D005243 ORTHO05D006670 6.9e-10 68.6 47 70.2
Nn5g27290 Nelumbo nucifera HOM05D005243 ORTHO05D006670 6.9e-10 68.6 53 66.0
CANSAT21G2280 Cannabis sativa HOM05D005243 ORTHO05D006670 9.0e-10 68.2 50 68.0
ATR0796G011 Amborella trichopoda HOM05D005243 ORTHO05D006670 1.2e-09 67.8 46 65.2
TWI75G0078 Tripterygium wilfordii HOM05D005243 ORTHO05D006670 1.2e-09 67.8 43 72.1
Zm00001eb145530 Zea mays HOM05D005243 ORTHO05D006670 1.2e-09 67.8 39 82.1
CSS0034512 Camellia sinensis var. sinensis HOM05D005243 ORTHO05D006670 1.5e-09 67.4 43 72.1
Potri.013G099600 Populus trichocarpa HOM05D005243 ORTHO05D006670 1.5e-09 67.4 46 69.6
Potri.019G071900 Populus trichocarpa HOM05D005243 ORTHO05D006670 1.5e-09 67.4 46 69.6
Nitab4.5_0003723g0010 Nicotiana tabacum HOM05D005243 ORTHO05D006670 2.0e-09 67.0 46 69.6
Ah.05g170330 Amaranthus hybridus HOM05D005243 ORTHO05D006670 2.6e-09 66.6 46 67.4
A09p41910 Brassica napus HOM05D005243 ORTHO05D006670 2.6e-09 66.6 47 68.1
CDE04G2106 Ceratophyllum demersum HOM05D005243 ORTHO05D006670 2.6e-09 66.6 46 65.2
C05p21940 Brassica napus HOM05D005243 ORTHO05D006670 3.4e-09 66.2 47 66.0
BolC5t30889H Brassica oleracea HOM05D005243 ORTHO05D006670 3.4e-09 66.2 47 66.0
HanXRQChr09g0267031 Helianthus annuus HOM05D005243 ORTHO05D006670 3.4e-09 66.2 43 74.4
Manes.18G116500 Manihot esculenta HOM05D005243 ORTHO05D006670 3.4e-09 66.2 46 67.4
Nitab4.5_0000213g0140 Nicotiana tabacum HOM05D005243 ORTHO05D006670 3.4e-09 66.2 46 67.4
Nitab4.5_0002654g0010 Nicotiana tabacum HOM05D005243 ORTHO05D006670 3.4e-09 66.2 53 62.3
PSO017G4652 Papaver somniferum HOM05D005243 ORTHO05D006670 4.5e-09 65.9 46 65.2
PSO170G2000 Papaver somniferum HOM05D005243 ORTHO05D006670 4.5e-09 65.9 46 65.2
Eucgr.F02953 Eucalyptus grandis HOM05D005243 ORTHO05D006670 5.8e-09 65.5 46 71.7
EL10Ac1g01265 Beta vulgaris HOM05D005243 ORTHO05D006670 7.6e-09 65.1 47 63.8
BraA09t39679Z Brassica rapa HOM05D005243 ORTHO05D006670 7.6e-09 65.1 47 66.0
CDE02G1053 Ceratophyllum demersum HOM05D005243 ORTHO05D006670 7.6e-09 65.1 46 63.0
Ciclev10021088m.g Citrus clementina HOM05D005243 ORTHO05D006670 7.6e-09 65.1 46 69.6
QL09p001863 Quercus lobata HOM05D005243 ORTHO05D006670 7.6e-09 65.1 46 71.7
QL11p001747 Quercus lobata HOM05D005243 ORTHO05D006670 7.6e-09 65.1 46 71.7
Solyc06g064570.3 Solanum lycopersicum HOM05D005243 ORTHO05D006670 7.6e-09 65.1 52 61.5
Sopen06g023050 Solanum pennellii HOM05D005243 ORTHO05D006670 7.6e-09 65.1 52 61.5
PGSC0003DMG400033127 Solanum tuberosum HOM05D005243 ORTHO05D006670 7.6e-09 65.1 52 61.5
unitig_37.g13079 Utricularia gibba HOM05D005243 ORTHO05D006670 7.6e-09 65.1 48 68.8
GSVIVG01036301001 Vitis vinifera HOM05D005243 ORTHO05D006670 7.6e-09 65.1 43 69.8
Cfa008079 Carpinus fangiana HOM05D005243 ORTHO05D006670 9.9e-09 64.7 46 67.4
Lsat_1_v5_gn_4_135781 Lactuca sativa HOM05D005243 ORTHO05D006670 1.3e-08 64.3 43 69.8
Nitab4.5_0003510g0060 Nicotiana tabacum HOM05D005243 ORTHO05D006670 1.3e-08 64.3 53 62.3
Hund16915 Selenicereus undatus HOM05D005243 ORTHO05D006670 1.3e-08 64.3 45 62.2
Sc01g0000060 Simmondsia chinensis HOM05D005243 ORTHO05D006670 1.3e-08 64.3 46 65.2
DCAR_003509 Daucus carota HOM05D005243 ORTHO05D006670 1.7e-08 63.9 43 69.8
Lj7A420T23 Lonicera japonica HOM05D005243 ORTHO05D006670 1.7e-08 63.9 46 63.0
Sp1g20330 Schrenkiella parvula HOM05D005243 ORTHO05D006670 1.7e-08 63.9 51 64.7
TAR628G0538 Trochodendron aralioides HOM05D005243 ORTHO05D006670 1.7e-08 63.9 45 64.4
HPP92_001198 Vanilla planifolia HOM05D005243 ORTHO05D006670 1.7e-08 63.9 46 67.4
AL1G36390 Arabidopsis lyrata HOM05D005243 ORTHO05D006670 2.2e-08 63.5 46 65.2
AT1G22850 Arabidopsis thaliana HOM05D005243 ORTHO05D006670 2.2e-08 63.5 46 65.2
CAN.G14.57 Capsicum annuum HOM05D005243 ORTHO05D006670 2.2e-08 63.5 48 64.6
Atru.chr13.2491 Acer truncatum HOM05D005243 ORTHO05D006670 2.9e-08 63.2 44 65.9
Atru.chr13.2503 Acer truncatum HOM05D005243 ORTHO05D006670 2.9e-08 63.2 44 65.9
Carub.0001s2235 Capsella rubella HOM05D005243 ORTHO05D006670 2.9e-08 63.2 46 65.2
Oeu039799.1 Olea europaea HOM05D005243 ORTHO05D006670 2.9e-08 63.2 48 62.5
Aa31LG7G6840 Aethionema arabicum HOM05D005243 ORTHO05D006670 3.8e-08 62.8 46 60.9
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 3.8e-08 62.8 43 65.1
Sabra13G0085400 Salix brachista HOM05D005243 ORTHO05D006670 3.8e-08 62.8 45 66.7
TWI18G0604 Tripterygium wilfordii HOM05D005243 ORTHO05D006670 3.8e-08 62.8 46 65.2
Aa31LG4G9150 Aethionema arabicum HOM05D005243 ORTHO05D006670 4.9e-08 62.4 46 67.4
BcaC06g34999 Brassica carinata HOM05D005243 ORTHO05D006670 4.9e-08 62.4 48 62.5
CiPaw.03G014500 Carya illinoinensis HOM05D005243 ORTHO05D006670 4.9e-08 62.4 46 67.4
FvH4_2g00910 Fragaria vesca HOM05D005243 ORTHO05D006670 4.9e-08 62.4 46 65.2
FAN24G1286 Fragaria x ananassa HOM05D005243 ORTHO05D006670 4.9e-08 62.4 46 65.2
FAN27G0682 Fragaria x ananassa HOM05D005243 ORTHO05D006670 4.9e-08 62.4 46 65.2
THA.LOC104810374 Tarenaya hassleriana HOM05D005243 ORTHO05D006670 4.9e-08 62.4 46 65.2
Cpa.g.sc21.82 Carica papaya HOM05D005243 ORTHO05D006670 6.4e-08 62.0 45 64.4
Duzib177G0679 Durio zibethinus HOM05D005243 ORTHO05D006670 6.4e-08 62.0 46 65.2
Gohir.A13G115700 Gossypium hirsutum HOM05D005243 ORTHO05D006670 6.4e-08 62.0 46 65.2
Prupe.8G007400 Prunus persica HOM05D005243 ORTHO05D006670 6.4e-08 62.0 47 61.7
RcHm_v2.0_Chr6g0251261 Rosa chinensis HOM05D005243 ORTHO05D006670 6.4e-08 62.0 46 63.0
Sc01g0000200 Simmondsia chinensis HOM05D005243 ORTHO05D006670 6.4e-08 62.0 45 64.4
MELO3C022172.2 Cucumis melo HOM05D005243 ORTHO05D006670 8.4e-08 61.6 43 67.4
Thhalv10008173m.g Eutrema salsugineum HOM05D005243 ORTHO05D006670 8.4e-08 61.6 46 65.2
Gohir.D13G118900 Gossypium hirsutum HOM05D005243 ORTHO05D006670 8.4e-08 61.6 46 65.2
Gorai.013G133200 Gossypium raimondii HOM05D005243 ORTHO05D006670 8.4e-08 61.6 46 65.2
Thecc.08G178200 Theobroma cacao HOM05D005243 ORTHO05D006670 8.4e-08 61.6 46 60.9
Actinidia15967 Actinidia chinensis HOM05D005243 ORTHO05D006670 1.1e-07 61.2 45 62.2
arahy.Tifrunner.gnm1.ann1.2FZ5KR Arachis hypogaea HOM05D005243 ORTHO05D006670 1.1e-07 61.2 48 58.3
Migut.C01377 Erythranthe guttata HOM05D005243 ORTHO05D006670 1.1e-07 61.2 47 63.8
CARHR023190 Cardamine hirsuta HOM05D005243 ORTHO05D006670 1.4e-07 60.8 46 63.0
CsaV3_5G039920 Cucumis sativus L. HOM05D005243 ORTHO05D006670 1.4e-07 60.8 43 65.1
Hma1.2p1_0016F.1_g010690 Hydrangea macrophylla HOM05D005243 ORTHO05D006670 1.4e-07 60.8 46 65.2
MD05G1004400 Malus domestica HOM05D005243 ORTHO05D006670 1.4e-07 60.8 46 63.0
CiPaw.04G009500 Carya illinoinensis HOM05D005243 ORTHO05D006670 1.9e-07 60.5 40 70.0
PGR042G0435 Punica granatum HOM05D005243 ORTHO05D006670 1.9e-07 60.5 43 62.8
C07p20840 Brassica napus HOM05D005243 ORTHO05D006670 2.4e-07 60.1 46 63.0
BolC7t42617H Brassica oleracea HOM05D005243 ORTHO05D006670 2.4e-07 60.1 46 63.0
arahy.Tifrunner.gnm1.ann1.Q0SER0 Arachis hypogaea HOM05D005243 ORTHO05D006670 3.2e-07 59.7 42 64.3
COL.COLO4_05201 Corchorus olitorius HOM05D005243 ORTHO05D006670 3.2e-07 59.7 46 60.9
BcaB03g14182 Brassica carinata HOM05D005243 ORTHO05D006670 4.2e-07 59.3 46 63.0
A07p14160 Brassica napus HOM05D005243 ORTHO05D006670 4.2e-07 59.3 46 60.9
BraA07t29174Z Brassica rapa HOM05D005243 ORTHO05D006670 4.2e-07 59.3 46 60.9
Medtr4g032670 Medicago truncatula HOM05D005243 ORTHO05D006670 4.2e-07 59.3 43 60.5
SGA_v2.0_scaffold118G32611 Striga asiatica HOM05D005243 ORTHO05D006670 5.5e-07 58.9 37 70.3
Psat7g226280 Pisum sativum HOM05D005243 ORTHO05D006670 7.1e-07 58.5 46 58.7
Sed0009328 Sechium edule HOM05D005243 ORTHO05D006670 9.3e-07 58.2 48 58.3
TPR.G34108 Trifolium pratense HOM05D005243 ORTHO05D006670 1.2e-06 57.8 43 60.5
FAN15G1820 Fragaria x ananassa HOM05D005243 ORTHO05D006670 1.6e-06 57.4 46 60.9
FAN20G0760 Fragaria x ananassa HOM05D005243 ORTHO05D006670 1.6e-06 57.4 46 60.9
MD10G1004900 Malus domestica HOM05D005243 ORTHO05D006670 1.6e-06 57.4 46 58.7
Phvul.011G000750 Phaseolus vulgaris HOM05D005243 ORTHO05D006670 2.7e-06 56.6 43 58.1
Haze_13955 Corylus avellana HOM05D005243 ORTHO05D006670 3.5e-06 56.2 45 64.4
Glyma.08G238400 Glycine max HOM05D005243 ORTHO05D006670 4.6e-06 55.8 43 55.8
Oeu013910.2 Olea europaea HOM05D005243 ORTHO05D006670 6.0e-06 55.5 29 79.3
VMungo1127G0343 Vigna mungo HOM05D005243 ORTHO05D006670 7.9e-06 55.1 45 55.6


User provided reference genes

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