Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 2.5e-139 498.8 262 100.0
Os04g0693200 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 1.8e-52 210.3 100 99.0
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 4.3e-38 162.5 259 39.8
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 3.6e-37 159.5 259 39.0
Zm00001eb434540 Zea mays HOM05D007225 ORTHO05D009062 1.1e-36 157.9 123 69.9
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 2.3e-36 156.8 259 38.2
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 1.5e-35 154.1 272 37.9
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 2.2e-34 150.2 278 36.7
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 3.7e-34 149.4 265 38.1
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 3.2e-33 146.4 278 36.3
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 7.1e-33 145.2 273 36.6
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 1.2e-32 144.4 269 36.4
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 2.7e-32 143.3 274 37.2
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 6.0e-32 142.1 256 37.9
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 3.9e-31 139.4 270 35.6
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 4.3e-30 136.0 252 36.1
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 5.6e-30 135.6 265 37.0
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 9.5e-30 134.8 269 35.3
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 1.6e-29 134.0 263 36.1
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 4.0e-28 129.4 260 36.2
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 5.2e-28 129.0 270 36.3
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 5.2e-28 129.0 253 35.6
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 1.2e-27 127.9 257 34.6
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 1.2e-27 127.9 261 34.1
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 1.5e-27 127.5 269 34.9
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 2.0e-27 127.1 253 35.2
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 2.6e-27 126.7 222 37.8
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 2.6e-27 126.7 269 36.8
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 2.6e-27 126.7 261 35.2
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 4.4e-27 125.9 264 32.6
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 1.3e-26 124.4 246 35.0
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 1.7e-26 124.0 265 33.6
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 1.7e-26 124.0 260 31.9
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 3.7e-26 122.9 269 36.4
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 4.9e-26 122.5 268 33.2
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 6.4e-26 122.1 264 34.8
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 8.3e-26 121.7 264 33.0
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 8.3e-26 121.7 244 33.6
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 8.3e-26 121.7 257 34.6
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.1e-25 121.3 280 32.1
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.1e-25 121.3 280 32.1
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 1.4e-25 120.9 267 33.0
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 1.4e-25 120.9 263 32.7
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 5.4e-25 119.0 280 32.5
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 5.4e-25 119.0 249 36.5
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 7.1e-25 118.6 280 36.8
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 9.2e-25 118.2 233 33.9
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 9.2e-25 118.2 244 32.8
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 9.2e-25 118.2 240 35.0
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 1.2e-24 117.9 264 32.6
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 3.5e-24 116.3 264 32.6
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 1.0e-23 114.8 196 37.2
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 1.3e-23 114.4 234 33.8
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 1.7e-23 114.0 255 30.6
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 1.7e-23 114.0 234 33.8
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 2.3e-23 113.6 281 31.0
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 3.0e-23 113.2 264 32.2
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 8.6e-23 111.7 251 33.9
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 1.5e-22 110.9 236 33.5
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 1.5e-22 110.9 229 37.1
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 2.5e-22 110.2 262 34.4
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 4.3e-22 109.4 310 29.4
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 7.3e-22 108.6 234 32.9
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 1.2e-21 107.8 263 35.4
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 2.8e-21 106.7 255 34.5
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 4.7e-21 105.9 175 36.6
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 4.7e-21 105.9 180 36.7
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 6.2e-21 105.5 263 33.8
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 6.2e-21 105.5 263 34.2
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 1.1e-20 104.8 258 35.3
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 1.4e-20 104.4 255 33.3
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 2.4e-20 103.6 280 30.4
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 3.1e-20 103.2 255 32.9
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 3.1e-20 103.2 255 32.9
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 4.0e-20 102.8 261 35.2
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 5.2e-20 102.4 260 34.2
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 8.9e-20 101.7 141 41.8
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 3.4e-19 99.8 255 31.4
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 3.4e-19 99.8 151 37.7
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 5.8e-19 99.0 200 33.0
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 5.8e-19 99.0 266 35.7
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 1.3e-18 97.8 274 28.5
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 1.7e-18 97.4 261 31.0
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 4.9e-18 95.9 228 30.3
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 4.9e-18 95.9 317 27.8
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 6.4e-18 95.5 139 41.7
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 8.4e-18 95.1 176 35.8
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 2.1e-16 90.5 211 31.8
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 4.6e-16 89.4 200 32.0
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 1.0e-15 88.2 257 32.3
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 1.0e-15 88.2 181 34.8
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 1.7e-15 87.4 263 31.6
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 1.7e-15 87.4 228 27.6
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 3.6e-13 79.7 273 24.2
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 5.3e-12 75.9 93 45.2
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 1.7e-10 70.9 175 31.4
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 2.2e-10 70.5 98 37.8
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 2.2e-10 70.5 112 35.7
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 2.9e-10 70.1 256 25.8
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 3.8e-10 69.7 163 33.1
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 6.4e-10 68.9 164 34.8
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 2.4e-09 67.0 163 32.5
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 5.4e-09 65.9 178 26.4
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 6.6e-07 58.9 226 23.9
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 8.7e-07 58.5 134 34.3


User provided reference genes

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