Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0677200 Oryza sativa ssp. japonica HOM05D003705 ORTHO05D007730 5.6e-91 339.0 438 100.0
Zm00001eb433730 Zea mays HOM05D002120 ORTHO05D007730 1.6e-26 124.8 188 72.3
DCAR_002613 Daucus carota HOM05D003705 ORTHO05D007730 3.1e-17 94.0 214 58.4
TAR636G0434 Trochodendron aralioides HOM05D003705 ORTHO05D007730 3.4e-16 90.5 213 56.8
FvH4_4g37290 Fragaria vesca HOM05D003705 ORTHO05D007730 7.7e-16 89.4 187 63.6
PSO063G7530 Papaver somniferum HOM05D003705 ORTHO05D007730 2.2e-15 87.8 191 63.9
PSO782G1796 Papaver somniferum HOM05D003705 ORTHO05D007730 3.8e-15 87.0 191 63.4
Cc00_g34130 Coffea canephora HOM05D003705 ORTHO05D007730 6.5e-15 86.3 187 58.8
FAN07G0376 Fragaria x ananassa HOM05D003705 ORTHO05D007730 6.5e-15 86.3 186 62.9
BcaNung03728 Brassica carinata HOM05D003705 ORTHO05D007730 8.5e-15 85.9 201 57.7
Cpa.g.sc247.2 Carica papaya HOM05D003705 ORTHO05D007730 1.1e-14 85.5 139 75.5
FAN17G0997 Fragaria x ananassa HOM05D003705 ORTHO05D007730 1.4e-14 85.1 186 62.9
SalBow2G0672 Salvia bowleyana HOM05D003705 ORTHO05D007730 2.5e-14 84.3 189 61.4
COL.COLO4_33134 Corchorus olitorius HOM05D003705 ORTHO05D007730 4.2e-14 83.6 139 77.7
Sp2g23760 Schrenkiella parvula HOM05D003705 ORTHO05D007730 1.6e-13 81.6 142 75.4
Aa31LG11G2840 Aethionema arabicum HOM05D003705 ORTHO05D007730 2.1e-13 81.3 140 74.3
Cfa018676 Carpinus fangiana HOM05D003705 ORTHO05D007730 2.1e-13 81.3 139 76.3
GSVIVG01034362001 Vitis vinifera HOM05D003705 ORTHO05D007730 2.1e-13 81.3 194 59.8
RcHm_v2.0_Chr4g0447111 Rosa chinensis HOM05D003705 ORTHO05D007730 2.7e-13 80.9 180 62.8
A06p34380 Brassica napus HOM05D003705 ORTHO05D007730 3.6e-13 80.5 142 73.9
BraA06t26368Z Brassica rapa HOM05D003705 ORTHO05D007730 3.6e-13 80.5 142 73.9
HPP92_005410 Vanilla planifolia HOM05D003705 ORTHO05D007730 3.6e-13 80.5 215 55.8
Duzib248G0348 Durio zibethinus HOM05D003705 ORTHO05D007730 6.1e-13 79.7 139 74.1
Gohir.D04G149600 Gossypium hirsutum HOM05D003705 ORTHO05D007730 6.1e-13 79.7 213 55.9
Gohir.A04G109488 Gossypium hirsutum HOM05D003705 ORTHO05D007730 7.9e-13 79.3 213 55.9
Duzib132G0369 Durio zibethinus HOM05D003705 ORTHO05D007730 1.4e-12 78.6 139 75.5
CiPaw.15G001000 Carya illinoinensis HOM05D003705 ORTHO05D007730 1.8e-12 78.2 140 75.7
Nitab4.5_0002707g0050 Nicotiana tabacum HOM05D003705 ORTHO05D007730 1.8e-12 78.2 139 74.1
TWI53G0779 Tripterygium wilfordii HOM05D003705 ORTHO05D007730 3.0e-12 77.4 139 74.8
BcaNung03849 Brassica carinata HOM05D003705 ORTHO05D007730 3.9e-12 77.0 140 74.3
C07p44150 Brassica napus HOM05D003705 ORTHO05D007730 3.9e-12 77.0 140 74.3
BolC7t44939H Brassica oleracea HOM05D003705 ORTHO05D007730 3.9e-12 77.0 140 74.3
AT5G23400 Arabidopsis thaliana HOM05D003705 ORTHO05D007730 6.7e-12 76.3 140 74.3
CARHR190100 Cardamine hirsuta HOM05D003705 ORTHO05D007730 1.1e-11 75.5 140 72.1
Thhalv10003885m.g Eutrema salsugineum HOM05D003705 ORTHO05D007730 1.1e-11 75.5 140 73.6
Gorai.012G136100 Gossypium raimondii HOM05D003705 ORTHO05D007730 1.5e-11 75.1 139 74.8
CANSAT78G0563 Cannabis sativa HOM05D003705 ORTHO05D007730 2.0e-11 74.7 139 75.5
AUR62032905 Chenopodium quinoa HOM05D003705 ORTHO05D007730 2.6e-11 74.3 139 72.7
Ciclev10014664m.g Citrus clementina HOM05D003705 ORTHO05D007730 2.6e-11 74.3 139 74.8
Oeu017056.1 Olea europaea HOM05D003705 ORTHO05D007730 2.6e-11 74.3 139 72.7
Peaxi162Scf00329g10011 Petunia axillaris HOM05D003705 ORTHO05D007730 2.6e-11 74.3 139 70.5
Nitab4.5_0007445g0060 Nicotiana tabacum HOM05D003705 ORTHO05D007730 3.3e-11 73.9 139 73.4
EL10Ac6g15595 Beta vulgaris HOM05D003705 ORTHO05D007730 5.7e-11 73.2 139 71.2
AUR62007539 Chenopodium quinoa HOM05D003705 ORTHO05D007730 7.4e-11 72.8 140 71.4
Atru.chr11.62 Acer truncatum HOM05D003705 ORTHO05D007730 9.7e-11 72.4 139 71.9
MELO3C011763.2 Cucumis melo HOM05D003705 ORTHO05D007730 9.7e-11 72.4 140 72.9
AL6G34670 Arabidopsis lyrata HOM05D003705 ORTHO05D007730 1.3e-10 72.0 140 72.9
QL01p000462 Quercus lobata HOM05D003705 ORTHO05D007730 1.3e-10 72.0 139 73.4
QL01p000551 Quercus lobata HOM05D003705 ORTHO05D007730 1.3e-10 72.0 139 73.4
ATR0124G032 Amborella trichopoda HOM05D003705 ORTHO05D007730 1.7e-10 71.6 230 53.9
SalBow1G1174 Salvia bowleyana HOM05D003705 ORTHO05D007730 1.7e-10 71.6 187 61.0
Haze_17404 Corylus avellana HOM05D003705 ORTHO05D007730 2.2e-10 71.2 140 72.9
AUR62004031 Chenopodium quinoa HOM05D003705 ORTHO05D007730 2.8e-10 70.9 140 71.4
MSTRG.2078 Avicennia marina HOM05D003705 ORTHO05D007730 8.2e-10 69.3 206 53.4
THA.LOC104800622 Tarenaya hassleriana HOM05D003705 ORTHO05D007730 8.2e-10 69.3 126 80.2
Cc11_g04520 Coffea canephora HOM05D003705 ORTHO05D007730 4.1e-09 67.0 139 70.5
Gorai.013G067100 Gossypium raimondii HOM05D003705 ORTHO05D007730 1.2e-08 65.5 139 71.9
MBI03_g13449_MAGBIO Magnolia biondii HOM05D003705 ORTHO05D007730 1.6e-08 65.1 139 73.4
CsaV3_5G029110 Cucumis sativus L. HOM05D003705 ORTHO05D007730 2.0e-08 64.7 140 70.7
PGR044G0096 Punica granatum HOM05D003705 ORTHO05D007730 2.0e-08 64.7 214 52.8
Manes.04G161700 Manihot esculenta HOM05D003705 ORTHO05D007730 2.6e-08 64.3 139 73.4
A09p06960 Brassica napus HOM05D003705 ORTHO05D007730 3.5e-08 63.9 142 69.7
BraA09t36344Z Brassica rapa HOM05D003705 ORTHO05D007730 3.5e-08 63.9 142 69.7
Gohir.D13G059300 Gossypium hirsutum HOM05D003705 ORTHO05D007730 4.5e-08 63.5 139 71.2
Eucgr.J00335 Eucalyptus grandis HOM05D003705 ORTHO05D007730 7.7e-08 62.8 140 69.3
TAR371G0400 Trochodendron aralioides HOM05D003705 ORTHO05D007730 1.3e-07 62.0 139 69.8
Gohir.A13G062600 Gossypium hirsutum HOM05D003705 ORTHO05D007730 1.7e-07 61.6 139 71.2
MD13G1001800 Malus domestica HOM05D003705 ORTHO05D007730 1.7e-07 61.6 139 69.8
Prupe.1G350800 Prunus persica HOM05D003705 ORTHO05D007730 2.9e-07 60.8 142 70.4
CSS0015770 Camellia sinensis var. sinensis HOM05D003705 ORTHO05D007730 3.8e-07 60.5 126 75.4
CSS0050258 Camellia sinensis var. sinensis HOM05D003705 ORTHO05D007730 3.8e-07 60.5 126 75.4
Migut.E00665 Erythranthe guttata HOM05D003705 ORTHO05D007730 3.8e-07 60.5 213 49.3
BcaC04g23494 Brassica carinata HOM05D003705 ORTHO05D007730 5.0e-07 60.1 142 69.0
C09p07720 Brassica napus HOM05D003705 ORTHO05D007730 5.0e-07 60.1 142 69.0
BolC9t53689H Brassica oleracea HOM05D003705 ORTHO05D007730 5.0e-07 60.1 142 69.0
Potri.007G001000 Populus trichocarpa HOM05D003705 ORTHO05D007730 1.9e-06 58.2 139 70.5
AUR62017748 Chenopodium quinoa HOM05D003705 ORTHO05D007730 2.5e-06 57.8 139 69.1
ClCG11G012730 Citrullus lanatus HOM05D003705 ORTHO05D007730 2.5e-06 57.8 29 79.3
BcaB04g19870 Brassica carinata HOM05D003705 ORTHO05D007730 3.2e-06 57.4 140 69.3
HanXRQChr17g0565511 Helianthus annuus HOM05D003705 ORTHO05D007730 3.2e-06 57.4 31 74.2
Nn3g18556 Nelumbo nucifera HOM05D003705 ORTHO05D007730 3.2e-06 57.4 139 66.2
Sed0022802 Sechium edule HOM05D003705 ORTHO05D007730 3.2e-06 57.4 29 79.3
TPR.G29147 Trifolium pratense HOM05D000071 ORTHO05D000029 3.2e-06 57.4 95 37.9
TAR629G0220 Trochodendron aralioides HOM05D003705 ORTHO05D007730 3.2e-06 57.4 139 67.6
Aqoxy3G04323 Aquilegia oxysepala HOM05D003705 ORTHO05D007730 5.5e-06 56.6 213 49.3
Lsat_1_v5_gn_4_26320 Lactuca sativa HOM05D003705 ORTHO05D007730 5.5e-06 56.6 29 75.9
Lj5g0004456 Lotus japonicus HOM05D003705 ORTHO05D007730 5.5e-06 56.6 139 69.8
Sed0025699 Sechium edule HOM05D003705 ORTHO05D007730 5.5e-06 56.6 140 65.7
PGSC0003DMG400025295 Solanum tuberosum HOM05D003705 ORTHO05D007730 5.5e-06 56.6 28 78.6
CAN.G419.8 Capsicum annuum HOM05D003705 ORTHO05D007730 7.2e-06 56.2 139 68.3
Solyc04g008830.1 Solanum lycopersicum HOM05D003705 ORTHO05D007730 7.2e-06 56.2 139 66.2
Sopen04g004010 Solanum pennellii HOM05D003705 ORTHO05D007730 7.2e-06 56.2 139 66.2


User provided reference genes

Program Settings