Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.8e-83 312.0 168 100.0
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.6e-17 93.6 153 41.2
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.3e-16 90.5 154 39.6
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.3e-16 89.7 161 41.6
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 5.0e-16 88.6 150 41.3
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.9e-15 86.7 136 44.9
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.9e-15 86.7 150 37.3
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 4.3e-15 85.5 164 39.6
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.3e-15 85.5 136 44.1
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.6e-15 85.1 154 39.6
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.6e-15 85.1 162 42.0
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.6e-15 85.1 162 42.0
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.5e-15 84.3 154 39.6
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-14 84.0 134 42.5
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.2e-14 84.0 159 38.4
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.6e-14 83.6 136 43.4
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.1e-14 83.2 134 42.5
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.1e-14 83.2 158 38.6
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.8e-14 82.8 159 39.0
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.8e-14 82.8 159 39.0
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.6e-14 82.4 134 41.8
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 4.7e-14 82.0 157 50.3
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 8.0e-14 81.3 152 37.5
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.0e-14 81.3 152 37.5
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.0e-14 81.3 152 37.5
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.0e-13 80.9 151 35.8
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-13 80.5 159 37.7
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.8e-13 80.1 153 35.9
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.8e-13 80.1 151 36.4
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.3e-13 79.7 151 39.1
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.0e-13 79.3 164 36.0
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 4.0e-13 79.0 153 40.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 4.0e-13 79.0 135 38.5
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 5.2e-13 78.6 160 36.2
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 6.8e-13 78.2 164 35.4
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 8.9e-13 77.8 134 35.1
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 8.9e-13 77.8 149 37.6
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.2e-12 77.4 154 33.8
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.5e-12 77.0 148 37.2
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.5e-12 77.0 151 37.1
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.5e-12 77.0 135 40.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.0e-12 76.6 158 34.2
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.6e-12 76.3 157 37.6
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.6e-12 76.3 149 37.6
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.6e-12 76.3 150 37.3
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 3.4e-12 75.9 150 38.7
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 3.4e-12 75.9 146 37.7
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 4.4e-12 75.5 136 41.9
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 4.4e-12 75.5 151 42.4
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 7.5e-12 74.7 154 36.4
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 7.5e-12 74.7 154 35.7
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.5e-12 74.7 151 37.1
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 9.8e-12 74.3 120 41.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-11 73.9 151 34.4
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-11 73.9 151 34.4
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.3e-11 73.9 151 37.1
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.3e-11 73.9 142 38.0
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.3e-11 73.9 151 36.4
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.7e-11 73.6 136 41.9
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.7e-11 73.6 155 34.8
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 2.2e-11 73.2 154 37.0
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.9e-11 72.8 147 34.0
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 2.9e-11 72.8 156 35.3
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 2.9e-11 72.8 156 35.3
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.9e-11 72.8 134 37.3
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 3.7e-11 72.4 151 35.1
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 3.7e-11 72.4 133 38.3
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 3.7e-11 72.4 154 35.7
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 4.9e-11 72.0 135 37.0
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 6.4e-11 71.6 157 42.7
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 8.3e-11 71.2 105 44.8
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.1e-10 70.9 153 38.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.4e-10 70.5 151 33.8
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.4e-10 70.5 150 36.7
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.8e-10 70.1 158 32.3
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.8e-10 70.1 152 37.5
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.8e-10 70.1 81 51.9
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.8e-10 70.1 128 40.6
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.2e-10 69.3 147 36.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 3.2e-10 69.3 80 50.0
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 3.2e-10 69.3 147 37.4
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 3.2e-10 69.3 99 47.5
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 4.1e-10 68.9 149 35.6
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 4.1e-10 68.9 159 35.8
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 4.1e-10 68.9 137 36.5
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 4.1e-10 68.9 146 35.6
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.1e-10 68.9 143 35.0
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 5.4e-10 68.6 160 34.4
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.4e-10 68.6 157 35.0
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.0e-10 68.2 87 47.1
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 7.0e-10 68.2 153 33.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 9.2e-10 67.8 81 50.6
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.2e-09 67.4 152 34.2
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.2e-09 67.4 146 34.9
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.2e-09 67.4 150 34.7
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-09 67.4 75 48.0
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.2e-09 67.4 152 34.2
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.6e-09 67.0 147 40.1
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.6e-09 67.0 112 40.2
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.0e-09 66.6 162 32.1
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.0e-09 66.6 147 34.0
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.0e-09 66.6 126 37.3
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.0e-09 66.6 141 36.2
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 4.6e-09 65.5 105 39.0
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.6e-09 65.5 146 36.3
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 5.9e-09 65.1 85 55.3
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.9e-09 65.1 146 34.9
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.9e-09 65.1 146 34.9
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 5.9e-09 65.1 41 75.6
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 7.8e-09 64.7 75 49.3
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 7.8e-09 64.7 149 30.9
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 7.8e-09 64.7 149 30.9
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 7.8e-09 64.7 148 30.4
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.0e-08 64.3 107 40.2
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.0e-08 64.3 107 43.0
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.0e-08 64.3 158 35.4
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.0e-08 64.3 74 51.4
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.7e-08 63.5 80 46.2
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.3e-08 63.2 75 50.7
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 3.0e-08 62.8 91 44.0
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 3.0e-08 62.8 89 49.4
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.9e-08 62.4 109 41.3
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 5.0e-08 62.0 81 46.9
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.0e-08 62.0 74 51.4
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.1e-07 60.8 156 28.8
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.1e-07 60.8 152 32.2
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-07 60.5 158 29.1
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.5e-07 60.5 105 38.1
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 1.9e-07 60.1 39 76.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.9e-07 60.1 87 41.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-07 60.1 93 38.7
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.9e-07 60.1 149 34.2
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.5e-07 59.7 105 38.1
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-07 59.7 156 27.6
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.5e-07 59.7 105 38.1
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.5e-07 59.7 75 46.7
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.3e-07 59.3 100 40.0
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.3e-07 59.3 105 38.1
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 4.3e-07 58.9 111 42.3
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.3e-07 58.9 158 28.5
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 5.6e-07 58.5 158 27.8
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 5.6e-07 58.5 105 37.1
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 7.3e-07 58.2 87 40.2
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.2e-06 57.4 123 31.7
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.2e-06 57.4 85 49.4
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-06 57.0 37 73.0
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.6e-06 57.0 116 31.9
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-06 56.6 95 35.8
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.1e-06 56.6 156 26.9
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.8e-06 56.2 77 40.3
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.8e-06 56.2 94 35.1
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 3.6e-06 55.8 149 32.2
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.6e-06 55.8 85 44.7
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.7e-06 55.5 37 64.9
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 6.2e-06 55.1 118 31.4
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 8.0e-06 54.7 161 27.3
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 8.0e-06 54.7 85 43.5


User provided reference genes

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