Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0661700 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D008797 0.0e+00 1607.4 949 100.0
Zm00001eb067460 Zea mays HOM05D002002 ORTHO05D008797 4.4e-133 479.9 543 60.8
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 1.4e-67 262.3 914 31.8
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 1.0e-65 256.1 950 32.8
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 2.4e-62 245.0 892 33.6
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 3.8e-60 237.7 915 32.1
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 1.4e-59 235.7 543 36.8
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 9.3e-59 233.0 895 32.0
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 2.7e-58 231.5 906 32.5
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 8.7e-57 226.5 877 33.2
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 4.3e-56 224.2 915 32.3
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 3.7e-55 221.1 883 33.2
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 1.8e-54 218.8 923 33.0
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 3.1e-54 218.0 911 32.8
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 6.9e-54 216.9 899 31.4
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 1.5e-53 215.7 878 31.2
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 4.2e-51 207.6 894 31.5
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 5.5e-51 207.2 867 30.6
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 9.3e-51 206.5 935 31.6
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 2.1e-50 205.3 907 31.3
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 3.5e-50 204.5 914 30.5
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 6.1e-50 203.8 914 31.4
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 2.3e-49 201.8 883 30.5
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 5.1e-49 200.7 847 31.2
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 6.7e-49 200.3 704 31.7
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 1.9e-48 198.7 864 31.2
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 2.5e-48 198.4 805 30.6
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 5.7e-48 197.2 905 32.5
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 1.6e-47 195.7 851 31.5
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 2.8e-47 194.9 936 30.0
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 1.8e-46 192.2 943 30.1
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 3.1e-46 191.4 905 32.4
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 4.1e-46 191.0 884 29.1
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 1.2e-45 189.5 914 31.9
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 2.0e-45 188.7 596 34.1
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 1.3e-44 186.0 856 30.4
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 3.2e-43 181.4 901 31.4
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 2.7e-42 178.3 838 32.0
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 2.7e-42 178.3 784 30.1
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 2.7e-42 178.3 845 29.5
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 3.6e-42 177.9 882 32.0
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 3.0e-41 174.9 863 30.7
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 1.5e-40 172.6 851 29.0
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 1.5e-40 172.6 875 29.4
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 1.5e-40 172.6 881 31.8
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 3.3e-40 171.4 882 29.9
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 3.3e-40 171.4 756 30.7
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 5.7e-40 170.6 940 31.1
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 1.3e-39 169.5 730 31.8
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 2.2e-39 168.7 774 29.3
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 2.2e-39 168.7 383 39.2
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 3.7e-39 167.9 894 30.8
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 4.8e-39 167.5 793 30.6
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 6.3e-39 167.2 844 30.0
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 1.1e-38 166.4 923 30.0
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 1.8e-38 165.6 875 28.2
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 6.9e-38 163.7 794 28.0
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 9.1e-38 163.3 874 30.8
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 2.0e-37 162.2 803 29.6
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 5.9e-37 160.6 890 32.0
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 1.0e-36 159.8 594 32.5
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 1.7e-36 159.1 874 28.3
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 2.9e-36 158.3 830 28.6
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 5.0e-36 157.5 808 32.7
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 8.5e-36 156.8 901 30.9
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 1.4e-35 156.0 851 30.6
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 3.2e-35 154.8 801 28.5
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 9.4e-35 153.3 692 32.9
SEGI_21221 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 1.6e-34 152.5 929 28.0
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 1.0e-33 149.8 892 28.4
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 3.0e-33 148.3 707 31.7
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 2.6e-32 145.2 854 29.4
SEGI_37990 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 5.7e-32 144.1 912 27.9
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 7.4e-32 143.7 942 27.5
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 1.7e-31 142.5 875 29.4
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 4.8e-31 141.0 949 27.6
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 1.8e-30 139.0 864 30.9
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 4.1e-30 137.9 892 28.5
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 1.5e-29 136.0 477 31.9
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 4.5e-29 134.4 868 29.8
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 2.9e-28 131.7 905 30.6
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 3.8e-28 131.3 787 28.6
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 1.5e-27 129.4 593 32.0
CDE07G1782 Ceratophyllum demersum HOM05D002002 ORTHO05D008797 1.0e-25 123.2 833 27.5
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 1.4e-25 122.9 866 27.5
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 1.8e-25 122.5 908 28.2
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 3.9e-25 121.3 888 28.8
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 5.2e-25 120.9 901 29.6
Mapoly0026s0020 Marchantia polymorpha HOM05D002002 ORTHO05D008797 7.7e-21 107.1 231 43.3
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 4.2e-19 101.3 938 28.7
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 1.2e-18 99.8 879 29.9
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 1.8e-17 95.9 893 26.7
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 6.8e-17 94.0 571 28.7
BraA02t06728Z Brassica rapa HOM05D002002 ORTHO05D008797 6.8e-17 94.0 875 28.8
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 1.4e-14 86.3 510 30.8
SGA_v2.0_scaffold98G29360 Striga asiatica HOM05D002002 ORTHO05D008797 2.0e-13 82.4 413 28.6
CARHR063850 Cardamine hirsuta HOM05D002002 ORTHO05D008797 2.7e-13 82.0 814 27.6
Thhalv10018098m.g Eutrema salsugineum HOM05D002002 ORTHO05D008797 8.5e-12 77.0 805 28.4
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 8.5e-12 77.0 378 28.6
unitig_26.g10410 Utricularia gibba HOM05D002002 ORTHO05D008797 8.5e-12 77.0 195 38.5
Pp3c22_14720 Physcomitrium patens HOM05D002002 ORTHO05D008797 3.6e-10 71.6 526 28.3
GSVIVG01005755001 Vitis vinifera HOM05D002002 ORTHO05D008797 4.7e-10 71.2 71 66.2
TPR.G3025 Trifolium pratense HOM05D002002 ORTHO05D008797 4.0e-09 68.2 267 29.6
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 9.8e-08 63.5 690 28.3
Lj6A812T43 Lonicera japonica HOM05D002002 ORTHO05D008797 1.1e-06 60.1 353 26.6
Sed0026296 Sechium edule HOM05D002002 ORTHO05D008797 4.1e-06 58.2 358 26.8
BcaC03g15213 Brassica carinata HOM05D002002 ORTHO05D008797 9.1e-06 57.0 863 26.8
BolC2t08843H Brassica oleracea HOM05D002002 ORTHO05D008797 9.1e-06 57.0 872 26.4


User provided reference genes

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