Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0645500 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 2.0e-138 495.7 249 100.0
Zm00001eb432040 Zea mays HOM05D001602 ORTHO05D001470 3.3e-80 302.4 219 74.0
PGR042G0660 Punica granatum HOM05D001602 ORTHO05D001470 5.1e-41 172.2 213 49.8
Nn1g00671 Nelumbo nucifera HOM05D001602 ORTHO05D001470 1.4e-38 164.1 196 50.5
COL.COLO4_17122 Corchorus olitorius HOM05D001602 ORTHO05D001470 2.0e-37 160.2 227 42.7
CDE11G1140 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 1.0e-36 157.9 192 51.0
MD06G1042700 Malus domestica HOM05D001602 ORTHO05D001470 5.0e-36 155.6 214 43.5
Thecc.03G235700 Theobroma cacao HOM05D001602 ORTHO05D001470 8.5e-36 154.8 209 45.0
TAR374G1398 Trochodendron aralioides HOM05D001602 ORTHO05D001470 1.4e-35 154.1 196 50.0
Duzib068G0907 Durio zibethinus HOM05D001602 ORTHO05D001470 5.5e-35 152.1 218 43.6
Cfa012366 Carpinus fangiana HOM05D001602 ORTHO05D001470 1.2e-34 151.0 222 44.1
Haze_08317 Corylus avellana HOM05D001602 ORTHO05D001470 1.8e-33 147.1 194 46.4
Hma1.2p1_0414F.1_g147600 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 3.9e-33 146.0 186 47.8
Ciclev10033731m.g Citrus clementina HOM05D001602 ORTHO05D001470 5.1e-33 145.6 193 44.6
Rhsim07G0121000 Rhododendron simsii HOM05D001602 ORTHO05D001470 1.1e-32 144.4 223 43.9
Gorai.004G189800 Gossypium raimondii HOM05D001602 ORTHO05D001470 1.7e-31 140.6 187 46.0
Gohir.A08G160600 Gossypium hirsutum HOM05D001602 ORTHO05D001470 2.2e-31 140.2 187 45.5
QL12p007555 Quercus lobata HOM05D001602 ORTHO05D001470 3.7e-31 139.4 193 46.1
Gohir.D08G180900 Gossypium hirsutum HOM05D001602 ORTHO05D001470 6.3e-31 138.7 187 45.5
Lj2P248T46 Lonicera japonica HOM05D001602 ORTHO05D001470 6.3e-31 138.7 191 45.0
RcHm_v2.0_Chr7g0207961 Rosa chinensis HOM05D001602 ORTHO05D001470 6.3e-31 138.7 218 42.2
Potri.001G148200 Populus trichocarpa HOM05D001602 ORTHO05D001470 1.4e-30 137.5 217 42.9
Aqoxy3G02562 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 1.8e-30 137.1 196 43.9
ClCG10G001950 Citrullus lanatus HOM05D001602 ORTHO05D001470 2.4e-30 136.7 220 41.4
TWI81G0159 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 4.1e-30 136.0 220 43.6
MELO3C013880.2 Cucumis melo HOM05D001602 ORTHO05D001470 2.6e-29 133.3 192 44.3
PSO384G4997 Papaver somniferum HOM05D001602 ORTHO05D001470 7.7e-29 131.7 201 42.3
SEGI_27117 Sequoiadendron giganteum HOM05D001602 ORTHO05D001470 1.8e-25 120.6 226 38.5
CiPaw.11G086400 Carya illinoinensis HOM05D001602 ORTHO05D001470 6.7e-25 118.6 152 46.7
Cc08_g01690 Coffea canephora HOM05D001602 ORTHO05D001470 6.7e-25 118.6 190 40.0
Mapoly0059s0066 Marchantia polymorpha HOM05D001602 ORTHO05D001470 8.8e-25 118.2 214 40.7
GSVIVG01013248001 Vitis vinifera HOM05D001602 ORTHO05D001470 1.4e-22 110.9 118 52.5
SMO118G0160 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 5.9e-21 105.5 232 36.6
Ah.12g053740 Amaranthus hybridus HOM05D001602 ORTHO05D001470 3.0e-17 93.2 186 36.6
CDE05G3564 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 6.7e-17 92.0 217 36.4
TAR375G0707 Trochodendron aralioides HOM05D001602 ORTHO05D001470 2.0e-16 90.5 163 39.3
TAR356G0001 Trochodendron aralioides HOM05D001602 ORTHO05D001470 5.3e-14 82.4 145 38.6
TAR375G0358 Trochodendron aralioides HOM05D001602 ORTHO05D001470 4.5e-13 79.3 155 37.4
TAR375G1144 Trochodendron aralioides HOM05D001602 ORTHO05D001470 1.0e-12 78.2 175 33.7
Zm00001eb218640 Zea mays HOM05D001602 ORTHO05D001470 8.5e-12 75.1 98 48.0
Cre03.g210401 Chlamydomonas reinhardtii HOM05D001602 ORTHO05D001470 9.4e-11 71.6 154 38.3
Pp3c10_13020 Physcomitrium patens HOM05D001602 ORTHO05D001470 2.7e-10 70.1 209 33.0
AagrBONN_evm.TU.Sc2ySwM_362.258 Anthoceros agrestis HOM05D001602 ORTHO05D001470 1.4e-09 67.8 155 38.1
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 1.4e-09 67.8 145 36.6
Pp3c26_2100 Physcomitrium patens HOM05D001602 ORTHO05D001470 1.8e-09 67.4 120 42.5
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 4.0e-09 66.2 213 33.8
Oeu027750.2 Olea europaea HOM05D001602 ORTHO05D001470 5.2e-09 65.9 149 36.2
DCAR_025942 Daucus carota HOM05D005677 ORTHO05D006966 8.8e-09 65.1 100 42.0
PSO210G3110 Papaver somniferum HOM05D005677 ORTHO05D006966 8.8e-09 65.1 121 38.8
FvH4_5g18590 Fragaria vesca HOM05D001602 ORTHO05D001470 1.2e-08 64.7 130 39.2
FAN18G2659 Fragaria x ananassa HOM05D000219 ORTHO05D000226 1.2e-08 64.7 130 39.2
COL.COLO4_12119 Corchorus olitorius HOM05D001552 ORTHO05D003294 1.5e-08 64.3 127 40.2
FAN04G0471 Fragaria x ananassa HOM05D001602 ORTHO05D001470 1.5e-08 64.3 130 39.2
HanXRQChr03g0089261 Helianthus annuus HOM05D001602 ORTHO05D001470 1.5e-08 64.3 227 30.4
THA.LOC104811422 Tarenaya hassleriana HOM05D001602 ORTHO05D001470 1.5e-08 64.3 130 37.7
Cfa004307 Carpinus fangiana HOM05D005677 ORTHO05D006966 2.0e-08 63.9 153 36.6
Cre17.g747147 Chlamydomonas reinhardtii HOM05D001602 ORTHO05D001470 2.6e-08 63.5 127 39.4
COL.COLO4_22080 Corchorus olitorius HOM05D005677 ORTHO05D006966 2.6e-08 63.5 124 37.9
Glyma.02G057000 Glycine max HOM05D005677 ORTHO05D006966 3.3e-08 63.2 113 41.6
EL10Ac4g09667 Beta vulgaris HOM05D001602 ORTHO05D001470 4.4e-08 62.8 156 32.7
CARHR066370 Cardamine hirsuta HOM05D001602 ORTHO05D001470 4.4e-08 62.8 133 38.3
Lsat_1_v5_gn_3_109781 Lactuca sativa HOM05D001602 ORTHO05D001470 4.4e-08 62.8 152 34.2
PGR044G0265 Punica granatum HOM05D001602 ORTHO05D001470 4.4e-08 62.8 129 37.2
Thecc.01G035800 Theobroma cacao HOM05D005677 ORTHO05D006966 4.4e-08 62.8 121 38.8
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 5.7e-08 62.4 150 34.7
MCO11G671 Micromonas commoda HOM05D005677 ORTHO05D006966 9.7e-08 61.6 131 39.7
MCO11G773 Micromonas commoda HOM05D001602 ORTHO05D006966 9.7e-08 61.6 145 36.6
A07p29850 Brassica napus HOM05D001602 ORTHO05D001470 1.3e-07 61.2 133 39.1
C06p34070 Brassica napus HOM05D001602 ORTHO05D001470 1.3e-07 61.2 133 38.3
BolC6t38522H Brassica oleracea HOM05D001602 ORTHO05D001470 1.3e-07 61.2 133 38.3
BraA07t30623Z Brassica rapa HOM05D000058 ORTHO05D000255 1.3e-07 61.2 133 39.1
BcaB03g15706 Brassica carinata HOM05D001602 ORTHO05D001470 1.7e-07 60.8 133 37.6
BcaC08g45650 Brassica carinata HOM05D001602 ORTHO05D001470 1.7e-07 60.8 133 38.3
ECA240G4616 Erigeron canadensis HOM05D001602 ORTHO05D001470 1.7e-07 60.8 121 37.2
CAN.G358.85 Capsicum annuum HOM05D005677 ORTHO05D006966 2.2e-07 60.5 96 40.6
GSVIVG01024244001 Vitis vinifera HOM05D001602 ORTHO05D001470 2.2e-07 60.5 155 36.1
AL2G33080 Arabidopsis lyrata HOM05D001602 ORTHO05D001470 2.8e-07 60.1 133 37.6
AT1G73320 Arabidopsis thaliana HOM05D001602 ORTHO05D001470 2.8e-07 60.1 133 37.6
Gorai.003G015000 Gossypium raimondii HOM05D005677 ORTHO05D006966 2.8e-07 60.1 138 35.5
Nitab4.5_0000178g0070 Nicotiana tabacum HOM05D005677 ORTHO05D006966 2.8e-07 60.1 84 45.2
PRCOL_00001643 Prasinoderma coloniale HOM05D001602 ORTHO05D001470 2.8e-07 60.1 199 32.2
PGSC0003DMG400003597 Solanum tuberosum HOM05D005677 ORTHO05D006966 2.8e-07 60.1 84 45.2
Duzib147G0715 Durio zibethinus HOM05D005677 ORTHO05D006966 3.7e-07 59.7 109 38.5
Gohir.D03G014700 Gossypium hirsutum HOM05D005677 ORTHO05D006966 3.7e-07 59.7 138 35.5
Manes.02G226200 Manihot esculenta HOM05D001602 ORTHO05D001470 3.7e-07 59.7 153 33.3
SalBow5G4467 Salvia bowleyana HOM05D005677 ORTHO05D006966 3.7e-07 59.7 128 39.8
SMO364G0506 Selaginella moellendorffii HOM05D005677 ORTHO05D006966 3.7e-07 59.7 109 38.5
Hund22357 Selenicereus undatus HOM05D001602 ORTHO05D001470 3.7e-07 59.7 196 31.6
Sc16g0002730 Simmondsia chinensis HOM05D003467 ORTHO05D004220 3.7e-07 59.7 141 35.5
Sopen02g029910 Solanum pennellii HOM05D005677 ORTHO05D006966 3.7e-07 59.7 96 40.6
Thhalv10018937m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 4.8e-07 59.3 133 36.8
FAN13G1167 Fragaria x ananassa HOM05D001602 ORTHO05D001470 6.3e-07 58.9 132 38.6
Nitab4.5_0001385g0030 Nicotiana tabacum HOM05D005677 ORTHO05D006966 6.3e-07 58.9 84 44.0
Potri.017G153900 Populus trichocarpa HOM05D001602 ORTHO05D001470 6.3e-07 58.9 127 38.6
Sp5g28250 Schrenkiella parvula HOM05D001602 ORTHO05D001470 6.3e-07 58.9 153 34.0
Solyc02g085210.1 Solanum lycopersicum HOM05D005677 ORTHO05D006966 6.3e-07 58.9 96 40.6
Actinidia34680 Actinidia chinensis HOM05D001602 ORTHO05D001470 8.2e-07 58.5 129 38.0
Cpa.g.sc6.112 Carica papaya HOM05D005677 ORTHO05D006966 8.2e-07 58.5 120 38.3
Dinv39987 Davidia involucrata HOM05D005677 ORTHO05D006966 8.2e-07 58.5 102 44.1
Sc10g0008650 Simmondsia chinensis HOM05D001602 ORTHO05D001470 8.2e-07 58.5 130 35.4
CiPaw.01G038100 Carya illinoinensis HOM05D005677 ORTHO05D006966 1.1e-06 58.2 113 37.2
vmacro17753 Vaccinium macrocarpon HOM05D001602 ORTHO05D001470 1.1e-06 58.2 114 40.4
CANSAT11G0022 Cannabis sativa HOM05D001602 ORTHO05D001470 1.4e-06 57.8 163 31.9
CARHR160400 Cardamine hirsuta HOM05D005677 ORTHO05D006966 1.4e-06 57.8 103 41.7
Thhalv10010630m.g Eutrema salsugineum HOM05D005677 ORTHO05D006966 1.4e-06 57.8 108 38.9
MBI03_g28536_MAGBIO Magnolia biondii HOM05D005677 ORTHO05D006966 1.4e-06 57.8 91 46.2
Oeu042263.1 Olea europaea HOM05D005677 ORTHO05D006966 1.4e-06 57.8 100 38.0
Os06g0101100 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 1.4e-06 57.8 157 37.6
TAR625G0490 Trochodendron aralioides HOM05D005677 ORTHO05D006966 1.4e-06 57.8 98 45.9
Carub.0002s2007 Capsella rubella HOM05D001602 ORTHO05D001470 1.8e-06 57.4 127 37.8
ClCG01G019540 Citrullus lanatus HOM05D005677 ORTHO05D006966 1.8e-06 57.4 103 37.9
Peaxi162Scf00366g10014 Petunia axillaris HOM05D005677 ORTHO05D006966 1.8e-06 57.4 84 45.2
Lalb_Chr16g0388501 Lupinus albus HOM05D005677 ORTHO05D006966 2.4e-06 57.0 101 38.6
Manes.01G135600 Manihot esculenta HOM05D005677 ORTHO05D006966 2.4e-06 57.0 112 37.5
Potri.007G025600 Populus trichocarpa HOM05D005677 ORTHO05D006966 2.4e-06 57.0 84 42.9
PRCOL_00003780 Prasinoderma coloniale HOM05D005677 ORTHO05D006966 2.4e-06 57.0 133 35.3
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 3.1e-06 56.6 135 33.3
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 3.1e-06 56.6 126 38.1
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 3.1e-06 56.6 128 36.7
TWI81G0762 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 3.1e-06 56.6 163 32.5
HPP92_019510 Vanilla planifolia HOM05D005677 ORTHO05D006966 3.1e-06 56.6 86 47.7
Zm00001eb295360 Zea mays HOM05D001602 ORTHO05D001470 3.1e-06 56.6 160 36.9
Atru.chr2.263 Acer truncatum HOM05D001602 ORTHO05D001470 4.1e-06 56.2 153 31.4
arahy.Tifrunner.gnm1.ann1.IXI1D4 Arachis hypogaea HOM05D001602 ORTHO05D001470 4.1e-06 56.2 127 35.4
AUR62007566 Chenopodium quinoa HOM05D005677 ORTHO05D006966 4.1e-06 56.2 136 36.8
Haze_15089 Corylus avellana HOM05D005677 ORTHO05D006966 4.1e-06 56.2 153 33.3
Migut.L00520 Erythranthe guttata HOM05D005677 ORTHO05D006966 4.1e-06 56.2 89 46.1
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 4.1e-06 56.2 125 36.0
Lalb_Chr22g0354061 Lupinus albus HOM05D001602 ORTHO05D001470 4.1e-06 56.2 175 31.4
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 5.3e-06 55.8 111 40.5
Gohir.A02G165300 Gossypium hirsutum HOM05D005677 ORTHO05D006966 5.3e-06 55.8 107 39.3
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 5.3e-06 55.8 129 34.1
Cre16.g670900 Chlamydomonas reinhardtii HOM05D005677 ORTHO05D006966 7.0e-06 55.5 89 47.2
Ciclev10024563m.g Citrus clementina HOM05D001602 ORTHO05D001470 7.0e-06 55.5 127 36.2
Medtr8g077610 Medicago truncatula HOM05D005677 ORTHO05D006966 7.0e-06 55.5 96 38.5
Nn2g12315 Nelumbo nucifera HOM05D005677 ORTHO05D006966 7.0e-06 55.5 123 35.8
EL10Ac6g15562 Beta vulgaris HOM05D005677 ORTHO05D006966 9.1e-06 55.1 126 35.7
Carub.0005s1724 Capsella rubella HOM05D005677 ORTHO05D006966 9.1e-06 55.1 103 37.9
Lj2P453T29 Lonicera japonica HOM05D005677 ORTHO05D006966 9.1e-06 55.1 96 38.5
LjContig00448g0024692 Lotus japonicus HOM05D005677 ORTHO05D006966 9.1e-06 55.1 96 39.6
PGR102G2535 Punica granatum HOM05D005677 ORTHO05D006966 9.1e-06 55.1 84 45.2
SMO340G0117 Selaginella moellendorffii HOM05D006745 ORTHO05D008449 9.1e-06 55.1 120 32.5


User provided reference genes

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