Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 8.3e-138 493.8 270 100.0
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 2.2e-130 469.2 270 93.3
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.1e-110 403.7 270 81.9
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 6.9e-108 394.4 270 79.6
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 5.8e-107 391.3 270 78.5
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 7.6e-107 391.0 270 78.9
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 7.6e-107 391.0 270 78.9
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 7.6e-107 391.0 270 78.9
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 9.9e-107 390.6 270 78.9
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.3e-106 390.2 270 78.1
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.7e-106 389.8 270 78.1
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.7e-106 389.8 270 77.4
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 2.2e-106 389.4 270 78.1
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.2e-106 389.4 270 78.1
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.2e-106 389.4 270 78.1
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.2e-106 389.4 270 77.8
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.9e-106 389.0 270 77.4
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.8e-106 388.7 270 78.1
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.8e-106 388.7 270 78.9
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 4.9e-106 388.3 270 77.0
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.4e-106 387.9 270 77.8
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 8.4e-106 387.5 270 76.3
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 8.4e-106 387.5 270 77.0
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.1e-105 387.1 270 77.8
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.9e-105 386.3 270 79.3
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.9e-105 386.3 270 76.3
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.9e-105 386.3 270 75.6
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.4e-105 386.0 270 78.1
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 3.2e-105 385.6 270 76.3
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.2e-105 385.6 270 77.0
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 3.2e-105 385.6 270 76.7
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 5.4e-105 384.8 270 77.4
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 5.4e-105 384.8 270 76.7
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 5.4e-105 384.8 270 75.9
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 7.1e-105 384.4 270 76.3
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 9.3e-105 384.0 270 78.9
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 9.3e-105 384.0 270 76.7
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 9.3e-105 384.0 270 75.6
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 9.3e-105 384.0 270 77.4
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.2e-104 383.6 270 78.9
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.2e-104 383.6 270 76.7
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.2e-104 383.6 270 77.4
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.6e-104 383.3 270 76.7
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.1e-104 382.9 270 75.6
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.1e-104 382.9 270 77.0
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.1e-104 382.9 270 75.6
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.7e-104 382.5 270 77.8
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 3.5e-104 382.1 270 77.0
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 3.5e-104 382.1 270 77.0
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 4.6e-104 381.7 270 74.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 4.6e-104 381.7 270 77.0
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 6.0e-104 381.3 270 75.9
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 6.0e-104 381.3 270 77.0
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.0e-104 381.3 270 76.3
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 7.9e-104 380.9 270 76.3
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 7.9e-104 380.9 270 76.3
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 7.9e-104 380.9 271 76.0
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-103 380.6 270 76.7
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.3e-103 380.2 270 77.0
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.3e-103 379.4 270 75.2
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.0e-103 379.0 270 74.8
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 3.0e-103 379.0 270 75.9
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.9e-103 378.6 270 74.8
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.9e-103 378.6 270 74.8
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.9e-103 378.6 270 76.7
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 6.7e-103 377.9 270 76.3
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.5e-102 376.7 270 77.4
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.5e-102 375.9 270 74.8
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.5e-102 375.9 270 75.9
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 4.3e-102 375.2 269 75.1
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 5.6e-102 374.8 270 76.7
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 7.4e-102 374.4 270 74.4
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 7.4e-102 374.4 270 76.3
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 7.4e-102 374.4 270 73.7
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 7.4e-102 374.4 270 75.2
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 9.6e-102 374.0 270 74.8
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.6e-101 373.2 270 74.8
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.1e-101 372.9 270 74.4
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 2.8e-101 372.5 270 74.4
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 2.8e-101 372.5 270 73.7
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.8e-101 372.5 270 75.2
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 3.7e-101 372.1 267 75.7
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 4.8e-101 371.7 270 74.4
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 6.2e-101 371.3 270 74.1
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.1e-100 370.5 270 74.4
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.4e-100 370.2 270 75.2
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.4e-100 369.4 270 74.8
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 3.1e-100 369.0 270 73.0
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 9.0e-100 367.5 270 74.8
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.5e-99 366.7 270 74.4
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.0e-99 366.3 270 73.7
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.6e-99 365.9 270 74.1
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 3.4e-99 365.5 270 74.4
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 3.4e-99 365.5 270 74.4
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 4.5e-99 365.2 270 74.1
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 4.5e-99 365.2 270 74.1
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 5.8e-99 364.8 270 77.0
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-98 364.0 270 73.7
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.0e-98 364.0 270 73.7
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.3e-98 363.6 270 73.7
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.3e-98 363.6 270 73.7
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 2.9e-98 362.5 270 73.3
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.8e-98 362.1 263 74.5
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 4.9e-98 361.7 270 73.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 4.9e-98 361.7 270 73.3
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 4.9e-98 361.7 270 73.7
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 6.5e-98 361.3 270 73.3
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 6.5e-98 361.3 270 73.3
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 6.5e-98 361.3 270 73.3
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 6.5e-98 361.3 270 73.3
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 1.4e-97 360.1 270 73.0
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 1.4e-97 360.1 270 73.0
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.9e-97 359.8 270 75.6
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.9e-97 359.8 270 73.7
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.5e-97 359.4 260 78.1
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.2e-97 358.6 255 75.7
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 5.5e-97 358.2 270 72.6
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 5.5e-97 358.2 270 74.8
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 7.1e-97 357.8 271 73.1
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 7.1e-97 357.8 271 73.1
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 7.1e-97 357.8 271 73.1
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 3.5e-96 355.5 270 73.3
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.3e-95 353.6 255 76.5
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.3e-95 353.6 247 76.9
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.3e-95 353.6 270 75.2
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 3.9e-95 352.1 270 74.1
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 8.7e-95 350.9 270 73.7
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.1e-94 350.5 255 75.3
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.5e-94 350.1 270 71.1
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.4e-92 343.6 240 78.3
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.0e-90 337.4 255 73.7
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 5.0e-90 335.1 270 70.4
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 5.0e-90 335.1 271 69.0
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.2e-88 330.5 270 68.1
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.6e-88 330.1 270 70.4
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.5e-86 322.8 271 68.3
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 7.4e-86 321.2 249 72.7
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 6.9e-84 314.7 217 77.4
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 9.0e-84 314.3 225 75.6
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.1e-81 307.4 233 71.2
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.2e-81 305.4 243 66.3
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.1e-80 303.1 270 60.4
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.7e-80 302.8 230 68.3
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 6.7e-79 298.1 222 74.8
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.5e-78 296.2 272 61.4
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.3e-78 295.4 270 63.7
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.8e-71 273.5 232 63.4
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 3.7e-69 265.8 271 58.3
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.8e-69 265.4 239 58.6
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.0e-67 260.0 255 58.4
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 5.9e-67 258.5 257 59.1
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.7e-66 256.9 211 68.2
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.9e-66 256.1 257 59.1
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 2.7e-64 249.6 217 62.2
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 3.6e-64 249.2 275 54.9
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 4.7e-64 248.8 215 61.4
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.8e-61 238.8 270 57.8
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.7e-50 203.8 138 79.7
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 8.5e-50 201.4 251 48.2
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.9e-49 200.3 242 53.3
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 6.1e-48 195.3 252 46.8
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 9.1e-44 181.4 138 72.5
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.7e-43 179.9 118 79.7
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.0e-42 177.9 116 77.6
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 2.2e-37 160.2 187 52.4
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 4.9e-29 132.5 200 45.0
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.1e-28 131.3 96 69.8
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.1e-24 117.1 135 55.6
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.6e-19 100.9 69 72.5


User provided reference genes

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