Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.3e-279 966.1 628 100.0
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 3.7e-96 356.7 461 49.0
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 9.9e-41 172.6 391 34.3
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 9.9e-41 172.6 436 33.9
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 9.3e-39 166.0 408 34.3
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 3.5e-38 164.1 453 33.1
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 1.0e-37 162.5 372 35.2
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.7e-37 161.8 461 31.0
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 6.6e-37 159.8 436 31.9
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.5e-36 158.7 447 31.3
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.1e-35 154.8 443 31.4
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 1.1e-34 152.5 449 29.4
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 2.4e-34 151.4 412 31.6
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 2.4e-34 151.4 426 32.4
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 4.0e-34 150.6 455 30.3
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 6.9e-34 149.8 316 33.2
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.5e-33 148.7 412 31.3
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 2.6e-33 147.9 317 34.4
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 7.6e-33 146.4 462 30.1
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 7.6e-33 146.4 385 31.7
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 7.6e-33 146.4 385 30.9
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 9.9e-33 146.0 427 30.4
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 6.4e-32 143.3 452 30.5
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 8.4e-32 142.9 455 32.3
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 8.4e-32 142.9 485 30.5
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 7.1e-31 139.8 497 29.8
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 7.1e-31 139.8 459 31.2
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 9.3e-31 139.4 425 32.0
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 2.7e-30 137.9 358 29.1
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 3.5e-30 137.5 425 31.8
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 4.6e-30 137.1 431 29.2
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 4.6e-30 137.1 422 30.3
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 6.0e-30 136.7 390 29.5
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 6.0e-30 136.7 426 31.0
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 6.0e-30 136.7 432 31.5
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 6.0e-30 136.7 462 32.5
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 1.0e-29 136.0 444 30.2
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 3.0e-29 134.4 389 28.8
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 3.0e-29 134.4 389 30.6
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 3.9e-29 134.0 447 30.4
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 2.5e-28 131.3 406 29.6
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 4.3e-28 130.6 454 31.3
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 4.3e-28 130.6 462 31.4
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 5.6e-28 130.2 424 29.5
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 7.3e-28 129.8 482 27.6
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 9.6e-28 129.4 452 27.9
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 9.6e-28 129.4 444 28.6
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.6e-27 128.6 382 29.8
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.8e-27 127.9 407 31.9
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 2.8e-27 127.9 440 28.9
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 3.6e-27 127.5 397 29.2
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 1.1e-26 125.9 439 28.7
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 1.4e-26 125.6 389 29.0
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.8e-26 125.2 229 31.9
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 4.0e-26 124.0 439 29.4
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 9.0e-26 122.9 340 30.0
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 1.2e-25 122.5 496 29.4
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 9.9e-25 119.4 377 30.5
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 9.9e-25 119.4 436 29.1
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 1.3e-24 119.0 502 27.1
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 2.2e-24 118.2 442 26.5
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 6.4e-24 116.7 491 28.3
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 8.4e-24 116.3 418 29.2
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 1.9e-23 115.2 377 30.5
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 2.4e-23 114.8 494 28.5
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 2.4e-23 114.8 434 28.3
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 3.2e-23 114.4 432 29.6
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 7.1e-23 113.2 374 29.7
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 2.7e-22 111.3 353 29.7
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 4.6e-22 110.5 404 30.0
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 6.0e-22 110.2 509 27.9
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 7.9e-22 109.8 256 30.5
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 7.9e-22 109.8 441 24.7
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 1.3e-21 109.0 269 29.7
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 1.3e-21 109.0 269 29.7
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 8.7e-21 106.3 374 28.6
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 1.1e-20 105.9 432 27.1
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.5e-20 105.5 462 26.4
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 1.5e-20 105.5 269 29.4
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 1.9e-20 105.1 222 33.3
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 9.6e-20 102.8 470 27.2
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 2.8e-19 101.3 168 36.3
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 2.8e-19 101.3 390 27.2
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 2.8e-19 101.3 445 27.4
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 3.7e-19 100.9 502 28.3
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 8.1e-19 99.8 440 25.2
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 8.1e-19 99.8 525 26.1
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 1.1e-18 99.4 367 30.0
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 1.8e-18 98.6 322 28.6
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 2.4e-18 98.2 535 26.0
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 5.3e-18 97.1 463 26.1
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 5.3e-18 97.1 369 30.9
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 9.0e-18 96.3 483 26.5
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.2e-17 95.9 356 28.1
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 1.5e-17 95.5 348 28.7
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 2.0e-17 95.1 430 26.5
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 3.4e-17 94.4 281 29.5
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 5.8e-17 93.6 467 26.3
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.7e-16 92.0 162 36.4
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 8.4e-16 89.7 492 25.0
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 1.1e-15 89.4 505 27.1
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 1.1e-15 89.4 409 25.2
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 1.4e-15 89.0 434 27.0
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 1.9e-15 88.6 412 26.5
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 7.1e-15 86.7 463 28.7
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 9.3e-15 86.3 542 23.8
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 1.6e-14 85.5 369 30.1
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 2.7e-14 84.7 320 27.5
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 1.5e-12 79.0 275 29.8
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 3.1e-10 71.2 59 57.6
AagrBONN_evm.TU.Sc2ySwM_228.1621 Anthoceros agrestis HOM05D006489 ORTHO05D007556 5.8e-09 67.0 148 29.7
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.3e-08 65.9 377 26.0
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 8.4e-08 63.2 98 38.8
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 1.9e-07 62.0 354 26.6
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 5.5e-07 60.5 103 32.0


User provided reference genes

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