Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 7.2e-37 156.8 80 100.0
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 9.7e-34 146.4 80 91.2
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 4.8e-33 144.1 80 88.8
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 8.2e-33 143.3 80 90.0
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 1.2e-23 112.8 80 70.0
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 2.2e-22 108.6 79 72.2
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 3.8e-22 107.8 79 69.6
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 8.5e-22 106.7 79 67.1
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 1.1e-21 106.3 79 67.1
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 1.4e-21 105.9 79 67.1
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.4e-21 105.9 79 67.1
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 1.9e-21 105.5 79 68.4
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 2.5e-21 105.1 79 65.8
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 2.5e-21 105.1 79 67.1
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 2.5e-21 105.1 79 67.1
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 2.5e-21 105.1 79 67.1
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 3.2e-21 104.8 79 64.6
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 3.2e-21 104.8 79 65.8
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 3.2e-21 104.8 79 68.4
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 3.2e-21 104.8 79 65.8
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 3.2e-21 104.8 79 65.8
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 3.2e-21 104.8 79 65.8
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 3.2e-21 104.8 79 64.6
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 3.2e-21 104.8 79 67.1
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 4.2e-21 104.4 79 65.8
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 4.2e-21 104.4 79 67.1
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 4.2e-21 104.4 79 67.1
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 4.2e-21 104.4 79 67.1
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 5.5e-21 104.0 79 63.3
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 5.5e-21 104.0 79 63.3
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 5.5e-21 104.0 79 65.8
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 7.2e-21 103.6 79 63.3
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 7.2e-21 103.6 79 67.1
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 9.4e-21 103.2 79 65.8
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 1.2e-20 102.8 79 63.3
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 1.2e-20 102.8 79 63.3
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 1.2e-20 102.8 79 63.3
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 1.2e-20 102.8 79 64.6
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 1.2e-20 102.8 79 69.6
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 1.2e-20 102.8 79 65.8
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 1.2e-20 102.8 79 65.8
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 1.6e-20 102.4 79 65.8
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 1.6e-20 102.4 79 65.8
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 1.6e-20 102.4 79 64.6
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 1.6e-20 102.4 79 64.6
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 2.1e-20 102.1 79 64.6
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 2.1e-20 102.1 79 64.6
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 2.7e-20 101.7 80 62.5
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 2.7e-20 101.7 79 65.8
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 2.7e-20 101.7 79 65.8
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 3.6e-20 101.3 79 63.3
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 3.6e-20 101.3 79 64.6
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 3.6e-20 101.3 79 65.8
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 3.6e-20 101.3 79 64.6
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 4.7e-20 100.9 79 64.6
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 6.1e-20 100.5 79 63.3
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 6.1e-20 100.5 79 64.6
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 7.9e-20 100.1 79 62.0
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 7.9e-20 100.1 79 62.0
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 1.0e-19 99.8 79 63.3
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 1.4e-19 99.4 79 62.0
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.4e-19 99.4 79 62.0
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.8e-19 99.0 79 63.3
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.8e-19 99.0 79 63.3
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 1.8e-19 99.0 80 60.0
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 1.8e-19 99.0 77 61.0
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 2.3e-19 98.6 79 60.8
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 2.3e-19 98.6 79 59.5
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 2.3e-19 98.6 79 63.3
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.0e-19 98.2 79 62.0
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 3.0e-19 98.2 77 63.6
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 3.0e-19 98.2 79 62.0
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 3.0e-19 98.2 80 60.0
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 3.0e-19 98.2 80 60.0
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 3.9e-19 97.8 79 62.0
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 1.1e-18 96.3 79 63.3
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 1.5e-18 95.9 79 59.5
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 1.5e-18 95.9 75 65.3
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 2.0e-18 95.5 79 60.8
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 2.6e-18 95.1 79 59.5
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.3e-18 94.7 76 63.2
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.3e-18 94.7 76 63.2
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 3.3e-18 94.7 79 59.5
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 4.4e-18 94.4 75 62.7
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 7.4e-18 93.6 75 65.3
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 7.4e-18 93.6 77 59.7
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.3e-17 92.8 79 55.7
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 1.7e-17 92.4 76 61.8
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 1.7e-17 92.4 66 71.2
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 3.7e-17 91.3 79 60.8
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 4.8e-17 90.9 71 64.8
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 4.8e-17 90.9 79 58.2
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 1.1e-16 89.7 79 55.7
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 1.1e-16 89.7 75 62.7
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 5.3e-16 87.4 77 53.2
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 7.0e-16 87.0 77 53.2
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 9.1e-16 86.7 64 67.2
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 1.6e-15 85.9 77 51.9
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 3.5e-15 84.7 77 50.6
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 3.5e-15 84.7 77 50.6
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 4.5e-15 84.3 77 50.6
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 4.5e-15 84.3 77 50.6
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 4.5e-15 84.3 77 50.6
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 4.5e-15 84.3 77 50.6
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 4.5e-15 84.3 77 50.6
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 1.7e-14 82.4 77 49.4
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 2.9e-14 81.6 77 49.4
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 2.9e-14 81.6 77 49.4
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 3.8e-14 81.3 61 60.7
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 1.1e-13 79.7 66 54.5
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 2.6e-10 68.6 53 69.8
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 4.4e-10 67.8 79 46.8
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 6.3e-09 63.9 44 63.6
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 3.1e-08 61.6 77 42.9
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 7.0e-08 60.5 77 41.6
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 7.0e-08 60.5 45 62.2
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 9.1e-08 60.1 44 70.5
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 7.7e-07 57.0 63 54.0
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 5.0e-06 54.3 53 52.8
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 8.5e-06 53.5 52 57.7


User provided reference genes

Program Settings