Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0623066 Oryza sativa ssp. japonica HOM05D019224 ORTHO05D012385 2.9e-277 958.0 504 100.0
Os02g0118800 Oryza sativa ssp. japonica HOM05D019224 ORTHO05D012385 4.2e-42 176.8 426 33.8
Os02g0118900 Oryza sativa ssp. japonica HOM05D019224 ORTHO05D012385 1.6e-41 174.9 385 37.1
Os02g0118950 Oryza sativa ssp. japonica HOM05D019224 ORTHO05D012385 1.4e-40 171.8 517 33.1
Os11g0429100 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 3.8e-27 127.1 275 41.5
Os04g0621500 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 2.1e-17 94.7 315 30.5
Os07g0141900 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 8.0e-17 92.8 273 35.9
Os06g0667900 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 6.8e-16 89.7 218 30.7
Os02g0262800 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 4.4e-15 87.0 274 33.2
Os06g0707733 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 3.7e-14 84.0 480 28.3
Os08g0296700 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 8.3e-14 82.8 181 32.6
Os11g0263000 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012224 4.1e-13 80.5 324 28.7
Os07g0521100 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D000008 2.3e-11 74.7 224 26.8
Os01g0178900 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 3.8e-11 73.9 158 34.8
Os04g0626500 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D293313 6.6e-11 73.2 259 31.3
Os06g0707350 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D298897 1.1e-10 72.4 384 28.6
GSVIVG01001448001 Vitis vinifera HOM05D000009 ORTHO05D000008 5.5e-10 70.1 150 35.3
Os12g0481700 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 9.5e-10 69.3 105 41.0
Os12g0482100 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 9.5e-10 69.3 105 41.0
GSVIVG01032189001 Vitis vinifera HOM05D000009 ORTHO05D000008 2.8e-09 67.8 142 33.8
Os07g0521600 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D000008 8.0e-09 66.2 112 38.4
arahy.Tifrunner.gnm1.ann1.I5JPYW Arachis hypogaea HOM05D000009 ORTHO05D000008 1.4e-08 65.5 398 25.6
CSS0040534 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 1.8e-08 65.1 156 29.5
HPP92_007482 Vanilla planifolia HOM05D000009 ORTHO05D000008 2.3e-08 64.7 160 30.6
GSVIVG01037447001 Vitis vinifera HOM05D000009 ORTHO05D000008 2.3e-08 64.7 149 34.9
Gorai.004G169700 Gossypium raimondii HOM05D000009 ORTHO05D000008 3.0e-08 64.3 145 30.3
RcHm_v2.0_Chr1g0327521 Rosa chinensis HOM05D000009 ORTHO05D000008 6.8e-08 63.2 113 36.3
GSVIVG01001473001 Vitis vinifera HOM05D000009 ORTHO05D000008 6.8e-08 63.2 298 25.2
GSVIVG01007026001 Vitis vinifera HOM05D000009 ORTHO05D000008 6.8e-08 63.2 106 40.6
Os10g0125700 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D298611 8.9e-08 62.8 103 46.6
Potri.001G025400 Populus trichocarpa HOM05D000009 ORTHO05D000008 8.9e-08 62.8 141 36.9
MD07G1057100 Malus domestica HOM05D000009 ORTHO05D000008 1.2e-07 62.4 418 27.3
Thecc.03G205700 Theobroma cacao HOM05D000009 ORTHO05D000008 1.2e-07 62.4 90 40.0
Prupe.2G022400 Prunus persica HOM05D000009 ORTHO05D000008 1.5e-07 62.0 86 40.7
RcHm_v2.0_Chr1g0373891 Rosa chinensis HOM05D000009 ORTHO05D000008 1.5e-07 62.0 125 32.8
MD11G1041100 Malus domestica HOM05D000009 ORTHO05D000008 2.0e-07 61.6 84 41.7
Os05g0492200 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D000008 2.6e-07 61.2 318 25.2
GSVIVG01001469001 Vitis vinifera HOM05D000009 ORTHO05D000008 2.6e-07 61.2 184 29.3
Zm00001eb405980 Zea mays HOM05D000009 ORTHO05D012224 2.6e-07 61.2 336 26.2
MD11G1033600 Malus domestica HOM05D000009 ORTHO05D000008 3.4e-07 60.8 87 41.4
Manes.10G133659 Manihot esculenta HOM05D000009 ORTHO05D000008 3.4e-07 60.8 153 33.3
QL04p012891 Quercus lobata HOM05D000009 ORTHO05D000008 3.4e-07 60.8 408 26.7
Manes.10G133653 Manihot esculenta HOM05D000009 ORTHO05D000008 4.4e-07 60.5 150 32.0
Oeu059939.4 Olea europaea HOM05D000009 ORTHO05D000008 4.4e-07 60.5 302 27.5
arahy.Tifrunner.gnm1.ann1.V6WQ14 Arachis hypogaea HOM05D000009 ORTHO05D000008 5.7e-07 60.1 164 28.7
Os02g0263432 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D295696 5.7e-07 60.1 121 33.9
GSVIVG01000656001 Vitis vinifera HOM05D000009 ORTHO05D000008 5.7e-07 60.1 145 31.0
arahy.Tifrunner.gnm1.ann1.N06FBV Arachis hypogaea HOM05D000009 ORTHO05D000008 7.5e-07 59.7 161 29.8
MD11G1011700 Malus domestica HOM05D000009 ORTHO05D000008 7.5e-07 59.7 90 38.9
Os06g0619000 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D000008 7.5e-07 59.7 178 31.5
Os12g0481400 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D012385 7.5e-07 59.7 105 41.0
Prupe.2G023600 Prunus persica HOM05D000009 ORTHO05D000008 7.5e-07 59.7 90 38.9
arahy.Tifrunner.gnm1.ann1.EHT0BW Arachis hypogaea HOM05D000009 ORTHO05D000008 9.8e-07 59.3 311 26.4
MD11G1045100 Malus domestica HOM05D000009 ORTHO05D000008 9.8e-07 59.3 112 37.5
arahy.Tifrunner.gnm1.ann1.W2PC18 Arachis hypogaea HOM05D000009 ORTHO05D000008 1.3e-06 58.9 116 37.1
FAN01G0287 Fragaria x ananassa HOM05D000009 ORTHO05D000008 1.3e-06 58.9 152 28.9
Gohir.D08G163100 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.3e-06 58.9 121 31.4
MD11G1030300 Malus domestica HOM05D000009 ORTHO05D000008 1.3e-06 58.9 81 40.7
Prupe.2G067600 Prunus persica HOM05D000009 ORTHO05D000008 1.3e-06 58.9 90 36.7
RcHm_v2.0_Chr7g0237021 Rosa chinensis HOM05D000009 ORTHO05D000008 1.3e-06 58.9 110 35.5
PGSC0003DMG400011045 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.3e-06 58.9 147 29.9
FAN03G2452 Fragaria x ananassa HOM05D000009 ORTHO05D000008 1.7e-06 58.5 90 38.9
FAN06G2344 Fragaria x ananassa HOM05D000009 ORTHO05D000008 1.7e-06 58.5 154 30.5
Zm00001eb291370 Zea mays HOM05D000009 ORTHO05D000008 2.2e-06 58.2 145 31.0
arahy.Tifrunner.gnm1.ann1.FCV80Y Arachis hypogaea HOM05D000009 ORTHO05D000008 2.8e-06 57.8 123 31.7
Glyma.20G046200 Glycine max HOM05D000009 ORTHO05D000008 2.8e-06 57.8 308 29.5
MD11G1033200 Malus domestica HOM05D000009 ORTHO05D000008 2.8e-06 57.8 86 40.7
Prupe.2G022900 Prunus persica HOM05D000009 ORTHO05D000008 2.8e-06 57.8 275 25.1
Prupe.2G023500 Prunus persica HOM05D000009 ORTHO05D000008 2.8e-06 57.8 86 39.5
Zm00001eb405960 Zea mays HOM05D000009 ORTHO05D012224 2.8e-06 57.8 320 25.6
Zm00001eb441980 Zea mays HOM05D000009 ORTHO05D012224 2.8e-06 57.8 320 25.6
arahy.Tifrunner.gnm1.ann1.10RJVF Arachis hypogaea HOM05D000009 ORTHO05D000008 3.7e-06 57.4 60 45.0
arahy.Tifrunner.gnm1.ann1.RYW3P7 Arachis hypogaea HOM05D000009 ORTHO05D000008 3.7e-06 57.4 60 45.0
Duzib138G1463 Durio zibethinus HOM05D000009 ORTHO05D000008 3.7e-06 57.4 95 35.8
FvH4_7g27891 Fragaria vesca HOM05D000009 ORTHO05D000008 3.7e-06 57.4 90 37.8
QL02p094947 Quercus lobata HOM05D000009 ORTHO05D000008 3.7e-06 57.4 157 31.8
arahy.Tifrunner.gnm1.ann1.N2E3I0 Arachis hypogaea HOM05D000005 ORTHO05D000012 4.9e-06 57.0 298 28.2
Dinv43409 Davidia involucrata HOM05D000009 ORTHO05D000008 4.9e-06 57.0 135 28.1
FvH4_7g28390 Fragaria vesca HOM05D000009 ORTHO05D000008 4.9e-06 57.0 89 36.0
MD11G1034400 Malus domestica HOM05D000009 ORTHO05D000008 4.9e-06 57.0 87 39.1
PGR042G2023 Punica granatum HOM05D000009 ORTHO05D000008 4.9e-06 57.0 121 31.4
arahy.Tifrunner.gnm1.ann1.EPWJ6L Arachis hypogaea HOM05D000009 ORTHO05D000008 6.3e-06 56.6 121 37.2
CSS0025332 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 6.3e-06 56.6 138 29.7
Eucgr.H03694 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.3e-06 56.6 256 28.1
Dinv01859 Davidia involucrata HOM05D000009 ORTHO05D000008 8.3e-06 56.2 158 27.8
QL02p094858 Quercus lobata HOM05D000009 ORTHO05D000008 8.3e-06 56.2 156 30.8
QL04p083906 Quercus lobata HOM05D000009 ORTHO05D000008 8.3e-06 56.2 156 30.8
GSVIVG01013512001 Vitis vinifera HOM05D000009 ORTHO05D000008 8.3e-06 56.2 149 33.6


User provided reference genes

Program Settings