Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 5.8e-121 437.6 220 100.0
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 1.8e-98 362.8 220 84.1
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 4.8e-75 285.0 171 78.9
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 8.2e-75 284.3 198 69.7
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 1.1e-74 283.9 209 67.5
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 1.5e-73 280.0 196 69.9
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 3.4e-73 278.9 203 68.0
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 3.4e-73 278.9 203 68.0
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 3.4e-73 278.9 175 77.1
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 1.0e-72 277.3 206 66.5
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 1.3e-72 276.9 186 73.7
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 1.7e-72 276.6 204 66.2
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 5.0e-72 275.0 186 67.2
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 5.0e-72 275.0 172 76.7
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 1.1e-71 273.9 217 65.9
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 7.2e-71 271.2 189 69.3
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 1.2e-70 270.4 179 73.7
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 6.1e-70 268.1 180 71.1
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 1.3e-69 266.9 174 72.4
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 1.8e-69 266.5 188 69.1
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 3.9e-69 265.4 172 73.8
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 5.1e-69 265.0 222 62.2
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 1.1e-68 263.8 204 64.7
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 1.9e-68 263.1 215 62.8
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 1.9e-68 263.1 204 63.7
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 1.9e-68 263.1 176 71.6
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 3.3e-68 262.3 221 62.4
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 5.7e-68 261.5 171 71.9
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 7.4e-68 261.2 195 66.7
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 7.4e-68 261.2 183 67.2
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 9.7e-68 260.8 227 59.0
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 9.7e-68 260.8 214 63.1
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 1.3e-67 260.4 207 63.8
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.3e-67 260.4 217 62.2
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 1.6e-67 260.0 206 63.1
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 1.6e-67 260.0 221 61.1
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 2.2e-67 259.6 210 61.9
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 2.8e-67 259.2 207 62.8
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 2.8e-67 259.2 217 61.8
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 2.8e-67 259.2 173 68.2
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 3.7e-67 258.8 180 68.3
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 3.7e-67 258.8 217 63.1
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 4.8e-67 258.5 175 68.6
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 4.8e-67 258.5 176 71.0
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 6.3e-67 258.1 218 63.3
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 8.2e-67 257.7 173 69.9
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 8.2e-67 257.7 235 57.4
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 1.1e-66 257.3 176 70.5
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 1.1e-66 257.3 176 69.9
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 1.4e-66 256.9 198 64.6
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 4.1e-66 255.4 174 70.1
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 6.9e-66 254.6 173 69.4
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 1.2e-65 253.8 197 64.5
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 2.0e-65 253.1 196 64.8
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 3.4e-65 252.3 209 62.2
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 4.5e-65 251.9 180 69.4
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 7.7e-65 251.1 215 58.6
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 1.3e-64 250.4 222 61.7
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 2.9e-64 249.2 202 62.9
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 3.8e-64 248.8 231 57.6
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 8.5e-64 247.7 174 67.2
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 8.5e-64 247.7 213 61.5
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 8.5e-64 247.7 158 73.4
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 1.1e-63 247.3 174 67.2
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 1.1e-63 247.3 174 67.2
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 1.1e-63 247.3 164 72.0
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 1.1e-63 247.3 216 60.6
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 1.4e-63 246.9 174 67.2
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 3.2e-63 245.7 199 62.3
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 3.2e-63 245.7 199 62.3
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 4.2e-63 245.4 199 62.8
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 4.2e-63 245.4 197 61.9
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 4.2e-63 245.4 221 58.8
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 5.5e-63 245.0 204 61.8
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 5.5e-63 245.0 200 61.0
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 5.5e-63 245.0 187 64.2
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 5.5e-63 245.0 174 67.2
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 5.5e-63 245.0 174 67.2
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 5.5e-63 245.0 174 67.2
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 5.5e-63 245.0 174 67.2
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 5.5e-63 245.0 174 67.2
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 5.5e-63 245.0 199 62.3
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 1.2e-62 243.8 200 60.0
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 3.6e-62 242.3 238 55.9
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 3.6e-62 242.3 204 61.3
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 4.6e-62 241.9 204 60.8
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 6.1e-62 241.5 228 58.8
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 6.1e-62 241.5 174 66.1
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 7.9e-62 241.1 204 61.3
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 2.3e-61 239.6 204 60.8
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 3.0e-61 239.2 228 57.9
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 4.8e-59 231.9 154 68.8
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 9.1e-58 227.6 196 60.7
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 9.1e-58 227.6 213 56.8
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 2.6e-57 226.1 166 64.5
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 2.7e-54 216.1 196 53.6
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 1.0e-53 214.2 214 57.5
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 2.3e-53 213.0 210 56.2
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 2.6e-49 199.5 121 76.9
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 1.3e-48 197.2 208 46.6
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 5.0e-48 195.3 173 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 1.9e-47 193.4 164 51.2
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 2.5e-47 193.0 190 54.2
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 7.2e-47 191.4 177 57.1
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 2.6e-44 183.0 165 53.9
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 3.3e-44 182.6 209 52.6
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 2.1e-38 163.3 120 64.2
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 2.7e-38 162.9 111 71.2
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.4e-37 160.6 118 63.6
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 1.4e-37 160.6 151 56.3
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 8.8e-37 157.9 114 62.3
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 2.9e-32 142.9 173 42.2
Oeu014126.1 Olea europaea HOM05D006422 ORTHO05D007992 1.1e-26 124.4 92 68.5
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.3e-24 117.5 109 52.3
Cre12.g502250 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 2.3e-24 116.7 225 37.3
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 1.5e-23 114.0 219 33.3
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 7.8e-17 91.7 163 29.4
PRCOL_00004658 Prasinoderma coloniale HOM05D006422 ORTHO05D007992 1.0e-16 91.3 200 33.5
Hund19396 Selenicereus undatus HOM05D006422 ORTHO05D007992 4.1e-10 69.3 116 39.7
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 3.5e-09 66.2 168 26.8
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 3.5e-09 66.2 167 25.1
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 3.5e-09 66.2 167 25.7
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 1.7e-08 63.9 169 27.8
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 1.7e-08 63.9 168 26.8
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 1.7e-08 63.9 165 25.5
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 3.0e-08 63.2 165 26.1
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 3.0e-08 63.2 167 27.5
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 3.9e-08 62.8 165 26.1
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 6.6e-08 62.0 168 26.2
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 1.1e-07 61.2 167 24.6
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.1e-07 61.2 181 26.5
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 2.5e-07 60.1 169 27.2
Pp3c1_42950 Physcomitrium patens HOM05D003483 ORTHO05D004101 9.5e-07 58.2 193 23.8
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 1.6e-06 57.4 177 23.2
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 2.1e-06 57.0 168 25.0


User provided reference genes

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